Rroxscaffold_164G00436230

Ndr family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000164
OG0001208
Physical Location & Seq
Forward (+)
185149 .. 191018
5870 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_164G00436230.1

Sequence Viewer

Length: 1035 bp
ATGGGCGAGTCGAGTGACTCAGTTTCTATTGACATTGATGTGATACCTTTAGGAGGGAAGGTAAAGCAAAAGGAATTAGAGTTCAAAAAATGCACCAAGAAATTAAAAGCATCAATCTTTTTAGACTTCAATGCTGAATGTGTGGTGAAAACAAGCAGAGGTTCAGTGTCTGTGTTTGTGTGTGGGGATCAAGGAAAGCCTGCTTTGATAACGTACCCAGATTGTTTGCAGTTGGGAGCTGATGTGATATCTTCAGATGTTCCTCTTCTTAGTGTGGATGACCTCGCAGACCAGCTAGTTGAAGTGCTTGATTTCTTTGGGTTGAAAGAGGTCCTGTGCTTGGGTGTGACAGCTGGTGCTTATATCCTTACACTGTTTGCAGAGCTTAGGTGTGGCATACAAGGTGCAGAATCAGATGTAATACAAGCTTGCCGAAGGTTATTGGATGAAAGACAAAGTTTGAACGTGATGCGATTTCTTCAAGCAATAAATGAGAGGCATGACCTTACAGAGAGCTTGAAGAGTTTGCAGTGCAAGACTCTTATTTTTGTGGGTGAAAATAGTCCATTCCATGCTGAATCTCTGTATATGAATGCGAGAATGGACGGAAAAAGTTGTGCTCTGGTTGAGGTTCAGTCATGTGGCTCGCTGGTAACAGAAGAGCACCCAAATGCTATGCTTATTCCAATCGAGTTTTTCCTCATGGGATTTGGCTACTACAGGCAACCACATTTTGCGTCCTCGTCAAGTAATGACTCGAACCCTACAAGCCCCTCAAGCTGTTTATCCATAGCACCAGAACTCTTTTCTCCTGAGGGTCTGGGTATCAAGCTCAAACCCATCAAAACAAGGATCCATTCGACAATGGCAAACTCAAAAATCAATTTGCAACTTCCTTCGCTCTCTTTGTTTTTATTTACACTACTCTCATTTTTGAGGCTGCGGGCACACACCACGATTGGTGAGATGGATGGAGATCGTAAATGGGAACAGCGCCTAGGTAGCCCTTGTACTAGGTACGCCACTAATGGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ndr

Protein Analysis

344

Amino Acids

37.81

Weight (kDa)

5.62

Isoelectric Point (pI)

44.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ndr PF03096 77 - 127 5.2e-14 Ndr family
Ndr PF03096 135 - 241 3.3e-32 Ndr family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 943
AclWI GGATC 3 cut(s) 195, 847, 860
AcuI CTGAAG 1 cut(s) 237
AfaI GTAC 3 cut(s) 215, 1012, 1019
AfiI CCNNNNNNNGG 2 cut(s) 53, 340
AgsI TTSAA 7 cut(s) 85, 130, 302, 325, 463, 482, 520
AloI GAACNNNNNNTCC 2 cut(s) 65, 97
AluBI AGCT 8 cut(s) 239, 295, 353, 385, 428, 516, 780, 832
AluI AGCT 8 cut(s) 239, 295, 353, 385, 428, 516, 780, 832
Alw21I GWGCWC 2 cut(s) 622, 666
AlwI GGATC 3 cut(s) 195, 847, 860
AlwNI CAGNNNCTG 1 cut(s) 170
ApeKI GCWGC 1 cut(s) 940
AspA2I CCTAGG 1 cut(s) 997
AspLEI GCGC 1 cut(s) 996
AspS9I GGNCC 1 cut(s) 331
AsuHPI GGTGA 3 cut(s) 157, 566, 974
AvaII GGWCC 1 cut(s) 331
AvrII CCTAGG 1 cut(s) 997
AxyI CCTNAGG 1 cut(s) 813
BaeGI GKGCMC 1 cut(s) 949
BamHI GGATCC 1 cut(s) 852
Bbv12I GWGCWC 2 cut(s) 622, 666
BbvI GCAGC 1 cut(s) 927
BccI CCATC 3 cut(s) 848, 961, 965
BfaI CTAG 3 cut(s) 296, 998, 1014
BfmI CTRYAG 1 cut(s) 718
BfoI RGCGCY 1 cut(s) 997
BisI GCNGC 1 cut(s) 941
BlnI CCTAGG 1 cut(s) 997
BlsI GCNGC 1 cut(s) 942
Bme18I GGWCC 1 cut(s) 331
BmgT120I GGNCC 1 cut(s) 331
BmiI GGNNCC 1 cut(s) 854
BmsI GCATC 2 cut(s) 119, 459
Bpu10I CCTNAGC 1 cut(s) 386
BpuEI CTTGAG 1 cut(s) 760
BsaBI GATNNNNATC 1 cut(s) 975
BsaJI CCNNGG 1 cut(s) 997
BsaXI ACNNNNNCTCC 4 cut(s) 45, 75, 228, 258
Bsc4I CCNNNNNNNGG 2 cut(s) 53, 340
Bse21I CCTNAGG 1 cut(s) 813
Bse8I GATNNNNATC 1 cut(s) 975
BseDI CCNNGG 1 cut(s) 997
BseGI GGATG 3 cut(s) 283, 451, 976
BseJI GATNNNNATC 1 cut(s) 975
BseLI CCNNNNNNNGG 2 cut(s) 53, 340
BseMII CTCAG 2 cut(s) 33, 804
BseSI GKGCMC 1 cut(s) 949
BseXI GCAGC 1 cut(s) 927
BsgI GTGCAG 1 cut(s) 426
BsiHKAI GWGCWC 2 cut(s) 622, 666
BslI CCNNNNNNNGG 2 cut(s) 53, 340
BsmI GAATGC 1 cut(s) 598
Bsp1286I GDGCHC 3 cut(s) 622, 666, 949
Bsp143I GATC 3 cut(s) 187, 852, 976
BspACI CCGC 1 cut(s) 943
BspCNI CTCAG 2 cut(s) 32, 805
BspLI GGNNCC 1 cut(s) 854
BspPI GGATC 3 cut(s) 195, 847, 860
BspQI GCTCTTC 1 cut(s) 654
BssECI CCNNGG 1 cut(s) 997
BssMI GATC 3 cut(s) 187, 852, 976
BssT1I CCWWGG 1 cut(s) 997
Bst4CI ACNGT 1 cut(s) 375
Bst6I CTCTTC 3 cut(s) 270, 515, 654
BstC8I GCNNGC 4 cut(s) 201, 430, 647, 945
BstDEI CTNAG 4 cut(s) 19, 269, 386, 813
BstENI CCTNNNNNAGG 1 cut(s) 51
BstF5I GGATG 3 cut(s) 283, 451, 976
BstH2I RGCGCY 1 cut(s) 997
BstHHI GCGC 1 cut(s) 996
BstKTI GATC 3 cut(s) 190, 855, 979
BstMBI GATC 3 cut(s) 187, 852, 976
BstMWI GCNNNNNNNGC 2 cut(s) 777, 1002
BstSFI CTRYAG 1 cut(s) 718
BstSLI GKGCMC 1 cut(s) 949
BstV1I GCAGC 1 cut(s) 927
BstX2I RGATCY 1 cut(s) 852
BstYI RGATCY 1 cut(s) 852
Bsu36I CCTNAGG 1 cut(s) 813
BtsCI GGATG 3 cut(s) 283, 451, 976
BtsI GCAGTG 1 cut(s) 536
BtsIMutI CAGTG 3 cut(s) 171, 371, 536
Cac8I GCNNGC 4 cut(s) 201, 430, 647, 945
CaiI CAGNNNCTG 1 cut(s) 170
CfoI GCGC 1 cut(s) 996
Cfr13I GGNCC 1 cut(s) 331
CseI GACGC 1 cut(s) 726
Csp6I GTAC 3 cut(s) 214, 1011, 1018
CviAII CATG 4 cut(s) 500, 572, 639, 703
CviQI GTAC 3 cut(s) 214, 1011, 1018
DdeI CTNAG 4 cut(s) 19, 269, 386, 813
DpnI GATC 3 cut(s) 189, 854, 978
DpnII GATC 3 cut(s) 187, 852, 976
Eam1104I CTCTTC 3 cut(s) 270, 515, 654
EarI CTCTTC 3 cut(s) 270, 515, 654
Eco130I CCWWGG 1 cut(s) 997
Eco32I GATATC 1 cut(s) 249
Eco47I GGWCC 1 cut(s) 331
Eco57I CTGAAG 1 cut(s) 237
Eco81I CCTNAGG 1 cut(s) 813
EcoNI CCTNNNNNAGG 1 cut(s) 51
EcoO109I RGGNCCY 1 cut(s) 331
EcoRV GATATC 1 cut(s) 249
EcoT14I CCWWGG 1 cut(s) 997
ErhI CCWWGG 1 cut(s) 997
FaeI CATG 4 cut(s) 503, 575, 642, 706
FatI CATG 4 cut(s) 499, 571, 638, 702
FauI CCCGC 1 cut(s) 936
Fnu4HI GCNGC 1 cut(s) 941
FokI GGATG 3 cut(s) 290, 458, 983
Fsp4HI GCNGC 1 cut(s) 941
FspBI CTAG 3 cut(s) 296, 998, 1014
GlaI GCGC 1 cut(s) 995
GluI GCNGC 1 cut(s) 941
HaeII RGCGCY 1 cut(s) 997
HgaI GACGC 1 cut(s) 726
HhaI GCGC 1 cut(s) 996
Hin1II CATG 4 cut(s) 503, 575, 642, 706
Hin6I GCGC 1 cut(s) 994
HinP1I GCGC 1 cut(s) 994
HindIII AAGCTT 1 cut(s) 426
HinfI GANTC 6 cut(s) 8, 17, 410, 538, 578, 755
HphI GGTGA 3 cut(s) 157, 566, 974
Hpy188I TCNGA 2 cut(s) 256, 415
Hpy188III TCNNGA 1 cut(s) 812
HpyAV CCTTC 3 cut(s) 52, 429, 906
HpyCH4III ACNGT 1 cut(s) 375
HpyCH4IV ACGT 2 cut(s) 212, 465
HpyCH4V TGCA 7 cut(s) 93, 229, 380, 407, 529, 534, 889
HpyF10VI GCNNNNNNNGC 2 cut(s) 777, 1002
HpyF3I CTNAG 4 cut(s) 19, 269, 386, 813
HpySE526I ACGT 2 cut(s) 212, 465
Hsp92II CATG 4 cut(s) 503, 575, 642, 706
HspAI GCGC 1 cut(s) 994
Kzo9I GATC 3 cut(s) 187, 852, 976
LguI GCTCTTC 1 cut(s) 654
LmnI GCTCC 1 cut(s) 236
Lsp1109I GCAGC 1 cut(s) 927
LweI GCATC 2 cut(s) 119, 459
MaeI CTAG 3 cut(s) 296, 998, 1014
MaeII ACGT 2 cut(s) 212, 465
MaeIII GTNAC 3 cut(s) 14, 346, 652
MalI GATC 3 cut(s) 189, 854, 978
MboI GATC 3 cut(s) 187, 852, 976
MboII GAAGA 5 cut(s) 243, 257, 470, 532, 671
MflI RGATCY 1 cut(s) 852
MhlI GDGCHC 3 cut(s) 622, 666, 949
MluCI AATT 3 cut(s) 74, 101, 883
MlyI GAGTC 4 cut(s) 11, 17, 532, 749
MseI TTAA 1 cut(s) 104
MslI CAYNNNNRTG 2 cut(s) 38, 669
MspA1I CMGCKG 1 cut(s) 353
Mva1269I GAATGC 1 cut(s) 598
MwoI GCNNNNNNNGC 2 cut(s) 777, 1002
NdeII GATC 3 cut(s) 187, 852, 976
NlaIII CATG 4 cut(s) 503, 575, 642, 706
NlaIV GGNNCC 1 cut(s) 854
NmuCI GTSAC 2 cut(s) 14, 346
PciSI GCTCTTC 1 cut(s) 654
PctI GAATGC 1 cut(s) 598
PfeI GAWTC 2 cut(s) 410, 578
PkrI GCNGC 1 cut(s) 942
PleI GAGTC 4 cut(s) 11, 16, 532, 749
PpsI GAGTC 4 cut(s) 11, 16, 532, 749
PpuMI RGGWCCY 1 cut(s) 331
Psp5II RGGWCCY 1 cut(s) 331
PspN4I GGNNCC 1 cut(s) 854
PspPI GGNCC 1 cut(s) 331
PspPPI RGGWCCY 1 cut(s) 331
PstNI CAGNNNCTG 1 cut(s) 170
PsuI RGATCY 1 cut(s) 852
PvuII CAGCTG 1 cut(s) 353
RsaI GTAC 3 cut(s) 215, 1012, 1019
RsaNI GTAC 3 cut(s) 214, 1011, 1018
RseI CAYNNNNRTG 2 cut(s) 38, 669
SapI GCTCTTC 1 cut(s) 654
SaqAI TTAA 1 cut(s) 104
SatI GCNGC 1 cut(s) 941
Sau3AI GATC 3 cut(s) 187, 852, 976
Sau96I GGNCC 1 cut(s) 331
SchI GAGTC 4 cut(s) 11, 17, 532, 749
SduI GDGCHC 3 cut(s) 622, 666, 949
SfaNI GCATC 2 cut(s) 119, 459
SfcI CTRYAG 1 cut(s) 718
SinI GGWCC 1 cut(s) 331
SmiMI CAYNNNNRTG 2 cut(s) 38, 669
SmlI CTYRAG 1 cut(s) 775
SmoI CTYRAG 1 cut(s) 775
Sse9I AATT 3 cut(s) 74, 101, 883
SsiI CCGC 1 cut(s) 943
SspMI CTAG 3 cut(s) 296, 998, 1014
StyI CCWWGG 1 cut(s) 997
TaaI ACNGT 1 cut(s) 375
TaiI ACGT 2 cut(s) 215, 468
TaqI TCGA 4 cut(s) 11, 690, 758, 860
TasI AATT 3 cut(s) 74, 101, 883
TatI WGTACW 1 cut(s) 1010
TfiI GAWTC 2 cut(s) 410, 578
Tru1I TTAA 1 cut(s) 104
Tru9I TTAA 1 cut(s) 104
TscAI CASTG 3 cut(s) 171, 378, 536
TseFI GTSAC 2 cut(s) 14, 346
TseI GCWGC 1 cut(s) 940
Tsp45I GTSAC 2 cut(s) 14, 346
TspDTI ATGAA 2 cut(s) 462, 605
TspGWI ACGGA 1 cut(s) 621
TspRI CASTG 3 cut(s) 171, 378, 536
VpaK11BI GGWCC 1 cut(s) 331
XagI CCTNNNNNAGG 1 cut(s) 51
XmaJI CCTAGG 1 cut(s) 997
XspI CTAG 3 cut(s) 296, 998, 1014
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.