Rroxscaffold_164G00436240

Ndr family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000164
OG0001208
Physical Location & Seq
Forward (+)
199468 .. 202125
2658 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_164G00436240.1

Sequence Viewer

Length: 855 bp
ATGCAATATAAAGAACGGGTGCTTGGGTTAATTCTTGTATCTCCTATCTGCAAAGTGCCTTCTTGGACAGAATGGCTCTACAACAAGGCCCTCTTGGAAGTATTGCTGAACTTGTTATATTTTTATGGTATGTGTGGTGTATTAAAGGAATGCCTTCTCCAGCGTTACTTCAGTAAGGAGCTTAGATGTGGCATACAAGGTGCAGAATCAGATGTAATACAAGCTTGCCGAAGGTTATTGGATGAAAGACAAAGTTCGAACGTGATGCGATTTCTTCAAGCAATAAATGATTTTACCCAACTCCGTTGTACAGGAGGCATGACCTTAGAGAGAGCTAGCTTGAAGAGTTTGCAGTGCAAGACTCTTATTTTTGTGGGTGAAAATAGTCCATTCCATGCTGAATCAGTGTATATGAATGCGAGAATGGACGGAAAAAGTTGTGCTCTGGTTGAGGTTCAATCATGTGGCTCGCTGGTAACAGAAGAGCACCCAAATGCCATGCTTATTCCAATCGAGTTTTTCCTCATGGGATTTGGCTACTACAGGCAACCACATTTTGCGTCCTCGTCAAGTAATGACTCGAACCCTACAAGCCCCTCGAGCTGTTTATCCATAGCACCAGAACTCTTTTCTCCTGAGGGTCTGGCTGTGTTCTTCCCCTTCTCCTCCGACCCGGCCCTAGAGCTCGCCCGGATCCAACTCAACCACGTCGGAGTCCACTCGTCGCCGGAAATCACCCTGGACCTCTCCTTCTCGCTGACGATCAAGGTCGATCAGTTCTCCGATCCGCCGTCGGTCATGGAATCAGACTCATCCTCGAGCCCAGAACCGGACTTCACCTTCGCCTTCAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ndr

Protein Analysis

284

Amino Acids

31.72

Weight (kDa)

5.01

Isoelectric Point (pI)

60.4

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ndr PF03096 1 - 182 1.2e-45 Ndr family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 788
AclWI GGATC 3 cut(s) 688, 701, 779
AcuI CTGAAG 1 cut(s) 154
AfaI GTAC 1 cut(s) 310
AfiI CCNNNNNNNGG 1 cut(s) 829
AgsI TTSAA 4 cut(s) 278, 343, 458, 850
AjiI CACGTC 1 cut(s) 709
AjnI CCWGG 1 cut(s) 738
AjuI GAANNNNNNNTTGG 1 cut(s) 38
AluBI AGCT 6 cut(s) 181, 224, 335, 339, 603, 685
AluI AGCT 6 cut(s) 181, 224, 335, 339, 603, 685
Alw21I GWGCWC 3 cut(s) 445, 489, 687
AlwI GGATC 3 cut(s) 688, 701, 779
Ama87I CYCGRG 2 cut(s) 598, 817
AoxI GGCC 2 cut(s) 87, 675
ArsI GACNNNNNNTTYG 1 cut(s) 824
Asp700I GAANNNNTTC 1 cut(s) 153
AspS9I GGNCC 3 cut(s) 88, 676, 742
AsuC2I CCSGG 2 cut(s) 674, 691
AsuHPI GGTGA 3 cut(s) 389, 727, 829
AsuII TTCGAA 1 cut(s) 257
AsuNHI GCTAGC 1 cut(s) 335
AvaI CYCGRG 2 cut(s) 598, 817
AvaII GGWCC 1 cut(s) 742
AxyI CCTNAGG 1 cut(s) 636
BamHI GGATCC 1 cut(s) 693
BanII GRGCYC 2 cut(s) 687, 824
Bbv12I GWGCWC 3 cut(s) 445, 489, 687
BceAI ACGGC 1 cut(s) 775
BcgI CGANNNNNNTGC 2 cut(s) 247, 281
BciT130I CCWGG 1 cut(s) 740
BcnI CCSGG 2 cut(s) 674, 691
BfaI CTAG 2 cut(s) 336, 680
BfmI CTRYAG 1 cut(s) 541
Bme1390I CCNGG 3 cut(s) 674, 691, 740
Bme18I GGWCC 1 cut(s) 742
BmeT110I CYCGRG 2 cut(s) 598, 817
BmgBI CACGTC 1 cut(s) 709
BmgT120I GGNCC 3 cut(s) 88, 676, 742
BmiI GGNNCC 1 cut(s) 695
BmrFI CCNGG 3 cut(s) 674, 691, 740
BmsI GCATC 1 cut(s) 255
BmtI GCTAGC 1 cut(s) 339
BpmI CTGGAG 1 cut(s) 143
Bpu14I TTCGAA 1 cut(s) 257
BpuMI CCSGG 2 cut(s) 674, 691
BsaJI CCNNGG 1 cut(s) 738
BsaWI WCCGGW 1 cut(s) 829
Bsc4I CCNNNNNNNGG 1 cut(s) 829
Bse21I CCTNAGG 1 cut(s) 636
BseBI CCWGG 1 cut(s) 740
BseDI CCNNGG 1 cut(s) 738
BseGI GGATG 2 cut(s) 247, 812
BseLI CCNNNNNNNGG 1 cut(s) 829
BseMII CTCAG 1 cut(s) 627
BseRI GAGGAG 1 cut(s) 655
BsgI GTGCAG 1 cut(s) 222
BshFI GGCC 2 cut(s) 89, 677
BsiHKAI GWGCWC 3 cut(s) 445, 489, 687
BsiHKCI CYCGRG 2 cut(s) 598, 817
BsiSI CCGG 4 cut(s) 674, 691, 728, 830
BslI CCNNNNNNNGG 1 cut(s) 829
BsmI GAATGC 2 cut(s) 155, 421
BsnI GGCC 2 cut(s) 89, 677
BsoBI CYCGRG 2 cut(s) 598, 817
Bsp119I TTCGAA 1 cut(s) 257
Bsp1286I GDGCHC 4 cut(s) 445, 489, 687, 824
Bsp1407I TGTACA 1 cut(s) 308
Bsp143I GATC 4 cut(s) 693, 762, 772, 784
BspACI CCGC 1 cut(s) 788
BspANI GGCC 2 cut(s) 89, 677
BspCNI CTCAG 1 cut(s) 628
BspLI GGNNCC 1 cut(s) 695
BspOI GCTAGC 1 cut(s) 339
BspPI GGATC 3 cut(s) 688, 701, 779
BspQI GCTCTTC 1 cut(s) 477
BspT104I TTCGAA 1 cut(s) 257
BsrGI TGTACA 1 cut(s) 308
BssECI CCNNGG 1 cut(s) 738
BssMI GATC 4 cut(s) 693, 762, 772, 784
Bst2UI CCWGG 1 cut(s) 740
Bst6I CTCTTC 2 cut(s) 338, 477
BstAUI TGTACA 1 cut(s) 308
BstBI TTCGAA 1 cut(s) 257
BstC8I GCNNGC 4 cut(s) 226, 337, 470, 687
BstDEI CTNAG 3 cut(s) 182, 325, 636
BstF5I GGATG 2 cut(s) 247, 812
BstKTI GATC 4 cut(s) 696, 765, 775, 787
BstMBI GATC 4 cut(s) 693, 762, 772, 784
BstMWI GCNNNNNNNGC 1 cut(s) 600
BstNI CCWGG 1 cut(s) 740
BstSCI CCNGG 3 cut(s) 672, 689, 738
BstSFI CTRYAG 1 cut(s) 541
BstX2I RGATCY 1 cut(s) 693
BstYI RGATCY 1 cut(s) 693
Bsu36I CCTNAGG 1 cut(s) 636
BsuRI GGCC 2 cut(s) 89, 677
BtrI CACGTC 1 cut(s) 709
BtsCI GGATG 2 cut(s) 247, 812
BtsI GCAGTG 1 cut(s) 359
BtsIMutI CAGTG 2 cut(s) 359, 411
Cac8I GCNNGC 4 cut(s) 226, 337, 470, 687
Cfr13I GGNCC 3 cut(s) 88, 676, 742
CseI GACGC 1 cut(s) 549
Csp6I GTAC 1 cut(s) 309
CviAII CATG 6 cut(s) 319, 395, 462, 499, 526, 799
CviQI GTAC 1 cut(s) 309
DdeI CTNAG 3 cut(s) 182, 325, 636
DpnI GATC 4 cut(s) 695, 764, 774, 786
DpnII GATC 4 cut(s) 693, 762, 772, 784
Eam1104I CTCTTC 2 cut(s) 338, 477
EarI CTCTTC 2 cut(s) 338, 477
EciI GGCGGA 1 cut(s) 777
Ecl136II GAGCTC 1 cut(s) 685
Eco24I GRGCYC 2 cut(s) 687, 824
Eco47I GGWCC 1 cut(s) 742
Eco53kI GAGCTC 1 cut(s) 685
Eco57I CTGAAG 1 cut(s) 154
Eco81I CCTNAGG 1 cut(s) 636
Eco88I CYCGRG 2 cut(s) 598, 817
EcoICRI GAGCTC 1 cut(s) 685
EcoO109I RGGNCCY 1 cut(s) 88
EcoRII CCWGG 1 cut(s) 738
EcoT38I GRGCYC 2 cut(s) 687, 824
FaeI CATG 6 cut(s) 322, 398, 465, 502, 529, 802
FalI AAGNNNNNCTT 2 cut(s) 77, 109
FatI CATG 6 cut(s) 318, 394, 461, 498, 525, 798
FokI GGATG 2 cut(s) 254, 799
FriOI GRGCYC 2 cut(s) 687, 824
FspBI CTAG 2 cut(s) 336, 680
GsuI CTGGAG 1 cut(s) 143
HaeIII GGCC 2 cut(s) 89, 677
HapII CCGG 4 cut(s) 674, 691, 728, 830
HgaI GACGC 1 cut(s) 549
Hin1II CATG 6 cut(s) 322, 398, 465, 502, 529, 802
HindIII AAGCTT 1 cut(s) 222
HinfI GANTC 7 cut(s) 206, 361, 401, 578, 714, 803, 809
HpaII CCGG 4 cut(s) 674, 691, 728, 830
HphI GGTGA 3 cut(s) 389, 727, 829
Hpy166II GTNNAC 1 cut(s) 718
Hpy188I TCNGA 5 cut(s) 211, 670, 713, 784, 808
Hpy188III TCNNGA 1 cut(s) 635
Hpy8I GTNNAC 1 cut(s) 718
Hpy99I CGWCG 3 cut(s) 713, 727, 796
HpyAV CCTTC 6 cut(s) 69, 164, 225, 670, 760, 850
HpyCH4IV ACGT 2 cut(s) 261, 708
HpyCH4V TGCA 5 cut(s) 4, 51, 203, 352, 357
HpyF10VI GCNNNNNNNGC 1 cut(s) 600
HpyF3I CTNAG 3 cut(s) 182, 325, 636
HpySE526I ACGT 2 cut(s) 261, 708
Hsp92II CATG 6 cut(s) 322, 398, 465, 502, 529, 802
Kzo9I GATC 4 cut(s) 693, 762, 772, 784
LguI GCTCTTC 1 cut(s) 477
LmnI GCTCC 1 cut(s) 178
LweI GCATC 1 cut(s) 255
MaeI CTAG 2 cut(s) 336, 680
MaeII ACGT 2 cut(s) 261, 708
MaeIII GTNAC 2 cut(s) 164, 475
MalI GATC 4 cut(s) 695, 764, 774, 786
MboI GATC 4 cut(s) 693, 762, 772, 784
MboII GAAGA 4 cut(s) 266, 355, 494, 646
MflI RGATCY 1 cut(s) 693
MhlI GDGCHC 4 cut(s) 445, 489, 687, 824
MluCI AATT 1 cut(s) 30
MlyI GAGTC 4 cut(s) 355, 572, 723, 803
MmeI TCCRAC 3 cut(s) 691, 693, 721
MroXI GAANNNNTTC 1 cut(s) 153
MseI TTAA 2 cut(s) 29, 143
MslI CAYNNNNRTG 1 cut(s) 492
MspI CCGG 4 cut(s) 674, 691, 728, 830
MspR9I CCNGG 3 cut(s) 674, 691, 740
Mva1269I GAATGC 2 cut(s) 155, 421
MvaI CCWGG 1 cut(s) 740
MwoI GCNNNNNNNGC 1 cut(s) 600
NciI CCSGG 2 cut(s) 674, 691
NdeII GATC 4 cut(s) 693, 762, 772, 784
NheI GCTAGC 1 cut(s) 335
NlaIII CATG 6 cut(s) 322, 398, 465, 502, 529, 802
NlaIV GGNNCC 1 cut(s) 695
NspV TTCGAA 1 cut(s) 257
PaeR7I CTCGAG 2 cut(s) 598, 817
PciSI GCTCTTC 1 cut(s) 477
PctI GAATGC 2 cut(s) 155, 421
PdmI GAANNNNTTC 1 cut(s) 153
PfeI GAWTC 3 cut(s) 206, 401, 803
PleI GAGTC 4 cut(s) 355, 572, 722, 803
PpsI GAGTC 4 cut(s) 355, 572, 722, 803
Psp124BI GAGCTC 1 cut(s) 687
Psp6I CCWGG 1 cut(s) 738
PspGI CCWGG 1 cut(s) 738
PspN4I GGNNCC 1 cut(s) 695
PspPI GGNCC 3 cut(s) 88, 676, 742
PspXI VCTCGAGB 2 cut(s) 598, 817
PsuI RGATCY 1 cut(s) 693
RsaI GTAC 1 cut(s) 310
RsaNI GTAC 1 cut(s) 309
RseI CAYNNNNRTG 1 cut(s) 492
SacI GAGCTC 1 cut(s) 687
SapI GCTCTTC 1 cut(s) 477
SaqAI TTAA 2 cut(s) 29, 143
Sau3AI GATC 4 cut(s) 693, 762, 772, 784
Sau96I GGNCC 3 cut(s) 88, 676, 742
SchI GAGTC 4 cut(s) 355, 572, 723, 803
ScrFI CCNGG 3 cut(s) 674, 691, 740
SduI GDGCHC 4 cut(s) 445, 489, 687, 824
SfaNI GCATC 1 cut(s) 255
SfcI CTRYAG 1 cut(s) 541
Sfr274I CTCGAG 2 cut(s) 598, 817
SfuI TTCGAA 1 cut(s) 257
SinI GGWCC 1 cut(s) 742
SlaI CTCGAG 2 cut(s) 598, 817
SmiMI CAYNNNNRTG 1 cut(s) 492
SmlI CTYRAG 2 cut(s) 598, 817
SmoI CTYRAG 2 cut(s) 598, 817
Sse9I AATT 1 cut(s) 30
SsiI CCGC 1 cut(s) 788
SspMI CTAG 2 cut(s) 336, 680
SstI GAGCTC 1 cut(s) 687
StyD4I CCNGG 3 cut(s) 672, 689, 738
TaiI ACGT 2 cut(s) 264, 711
TaqI TCGA 6 cut(s) 257, 513, 581, 599, 771, 818
TaqII GACCGA 1 cut(s) 784
TasI AATT 1 cut(s) 30
TatI WGTACW 1 cut(s) 308
TfiI GAWTC 3 cut(s) 206, 401, 803
Tru1I TTAA 2 cut(s) 29, 143
Tru9I TTAA 2 cut(s) 29, 143
TscAI CASTG 2 cut(s) 359, 411
TspDTI ATGAA 2 cut(s) 258, 428
TspGWI ACGGA 2 cut(s) 293, 444
TspRI CASTG 2 cut(s) 359, 411
VpaK11BI GGWCC 1 cut(s) 742
XhoI CTCGAG 2 cut(s) 598, 817
XmnI GAANNNNTTC 1 cut(s) 153
XspI CTAG 2 cut(s) 336, 680
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.