Rorug02G0031000

Pollen-specific protein SF21-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0001208
Physical Location & Seq
Forward (+)
2485533 .. 2485691
159 bp
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UTR
Exon/CDS
Intron
Rorug02G0031000.1

Sequence Viewer

Length: 159 bp
ATGATGCAGCTCTTTGATTCTTGTACTCTCCAACACATACACAGGGAGAGGAATACAGTTGCTGACATCTTAGCCAAGGAAAGCTTAAATTGCTCTAGAGGAACTCGCTTAATGAACCAGTCTCCTTTCAAGTTATTCAGGTTTCGCTTGATGACATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ndr

Protein Analysis

52

Amino Acids

6.19

Weight (kDa)

10.07

Isoelectric Point (pI)

63.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RVT_3 PF13456 1 - 27 3.4e-06 Reverse transcriptase-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfaI GTAC 1 cut(s) 25
AgsI TTSAA 1 cut(s) 130
AluBI AGCT 2 cut(s) 10, 84
AluI AGCT 2 cut(s) 10, 84
Alw26I GTCTC 1 cut(s) 126
AlwNI CAGNNNCTG 1 cut(s) 62
ApeKI GCWGC 1 cut(s) 7
BbvI GCAGC 1 cut(s) 19
BcoDI GTCTC 1 cut(s) 126
BfaI CTAG 1 cut(s) 96
BisI GCNGC 1 cut(s) 8
BlsI GCNGC 1 cut(s) 9
BsaJI CCNNGG 1 cut(s) 75
Bse1I ACTGG 1 cut(s) 118
BseDI CCNNGG 1 cut(s) 75
BseNI ACTGG 1 cut(s) 118
BseXI GCAGC 1 cut(s) 19
BsmAI GTCTC 1 cut(s) 126
BsrI ACTGG 1 cut(s) 118
BssECI CCNNGG 1 cut(s) 75
BssT1I CCWWGG 1 cut(s) 75
Bst4CI ACNGT 1 cut(s) 58
BstDEI CTNAG 1 cut(s) 70
BstMAI GTCTC 1 cut(s) 126
BstMWI GCNNNNNNNGC 1 cut(s) 90
BstV1I GCAGC 1 cut(s) 19
CaiI CAGNNNCTG 1 cut(s) 62
Csp6I GTAC 1 cut(s) 24
CviJI RGCY 3 cut(s) 10, 74, 84
CviKI_1 RGCY 3 cut(s) 10, 74, 84
CviQI GTAC 1 cut(s) 24
DdeI CTNAG 1 cut(s) 70
Eco130I CCWWGG 1 cut(s) 75
EcoT14I CCWWGG 1 cut(s) 75
ErhI CCWWGG 1 cut(s) 75
FaiI YATR 2 cut(s) 38, 157
FalI AAGNNNNNCTT 2 cut(s) 68, 100
Fnu4HI GCNGC 1 cut(s) 8
Fsp4HI GCNGC 1 cut(s) 8
FspBI CTAG 1 cut(s) 96
GluI GCNGC 1 cut(s) 8
HindIII AAGCTT 1 cut(s) 82
HinfI GANTC 1 cut(s) 17
Hpy188III TCNNGA 1 cut(s) 96
HpyCH4III ACNGT 1 cut(s) 58
HpyCH4V TGCA 1 cut(s) 7
HpyF10VI GCNNNNNNNGC 1 cut(s) 90
HpyF3I CTNAG 1 cut(s) 70
LpnPI CCDG 3 cut(s) 28, 124, 131
Lsp1109I GCAGC 1 cut(s) 19
MaeI CTAG 1 cut(s) 96
MluCI AATT 1 cut(s) 88
MmeI TCCRAC 1 cut(s) 55
MnlI CCTC 2 cut(s) 42, 92
MseI TTAA 2 cut(s) 86, 110
MwoI GCNNNNNNNGC 1 cut(s) 90
PfeI GAWTC 1 cut(s) 17
PkrI GCNGC 1 cut(s) 9
PstNI CAGNNNCTG 1 cut(s) 62
RsaI GTAC 1 cut(s) 25
RsaNI GTAC 1 cut(s) 24
SaqAI TTAA 2 cut(s) 86, 110
SatI GCNGC 1 cut(s) 8
SetI ASST 3 cut(s) 12, 86, 143
SgeI CNNG 8 cut(s) 33, 55, 88, 108, 117, 130, 142, 151
Sse9I AATT 1 cut(s) 88
SspMI CTAG 1 cut(s) 96
StyI CCWWGG 1 cut(s) 75
TaaI ACNGT 1 cut(s) 58
TasI AATT 1 cut(s) 88
TatI WGTACW 1 cut(s) 23
TfiI GAWTC 1 cut(s) 17
Tru1I TTAA 2 cut(s) 86, 110
Tru9I TTAA 2 cut(s) 86, 110
TseI GCWGC 1 cut(s) 7
TspDTI ATGAA 1 cut(s) 128
XbaI TCTAGA 1 cut(s) 95
XspI CTAG 1 cut(s) 96
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.