Rh2BG078300

Pollen-specific protein SF21-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0001208
Physical Location & Seq
Reverse (-)
6008148 .. 6012464
4317 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG078300.1

Sequence Viewer

Length: 999 bp
ATGTTTTATCCTCAGGAACATTTTATTCGAACTGGCTGTGGTTCTGTGTCTGTTATAGTTTATGGAGACCAAGATAAGCCGGCACTTATCACGTATCCTGATTTAGCTCTAAATCATATGTCTTGTTTCCAAGGGCTATTCTTTTGTCCTGAAGCAGCTTCTTTGCTGCTCCACAACTTCTGCATATACCATATTAGTCCTCCTGGTCATGAGTTAGGAGCTGCTTCGATTAGTCTTGATGATCCTGTGCCTTCTGCTGATGACTTGGCAGATCAGATCCTTGAGGTTCTCAACTTTTTCGGGCTTGGTGCAGTTATGTGCATGGGAGTGACGGCGGGTGCTTATGTCCTTTCCCTATTTGCTATGAAATATAGGGAACGCGTTCTTGGTTTGATACTTGTATCCCCATTATGCAGAGCACCATCTTGGACTGAATGGTTTTATAATAAGGTGATATCAAACATGCTATATTTCTATGGCATGTGTGGTTTGTTAAAGGAGTGTTTACTTCAGCGTTACTTCAGTAAGGAGGTTCGTGGTAGTGCTGAAGTTCCAGAGTCAGATATAGTTCAAGCATGCAGAAAATTATTGGAAGAGAGGCAGAGCTCAAATGTTTGGAGATTTCTTCAAGCAATTAATCGGAGACCTGACATAACTGAAGGATTGAAGTCACTAAGGTGTCGCACTCTCATTTTTGTTGGGGATAGCTCTCCTTTTCACTCTGAGGCTCTCCACATGACCTCAAAGTTGGATAGAAGATATAGTGCCTTAGTAGAGGTCCAGGCTTGTGGATCGATGGTGACAGAGGAGCAGCCACATGCAATGTTGATACCCATGGAGTACTTCTTCATGGGGTATGGTTTGTACAGACCGTGTCATTTCAGCGAGAGCCCAAGGAGCCCACTCAGCCCATCTTGCATCTCCCCTGAGCTTCTCTCCCCGGAAAGCATGGGTCTGAAGCTAAAACCAATCAAGACCCGTGTTTCGCTCGGATTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ndr

Protein Analysis

332

Amino Acids

37.27

Weight (kDa)

6.15

Isoelectric Point (pI)

55.43

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ndr PF03096 6 - 290 4.5e-116 Ndr family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 444, 997
AccII CGCG 1 cut(s) 381
AciI CCGC 1 cut(s) 335
AclWI GGATC 3 cut(s) 236, 271, 799
AcuI CTGAAG 6 cut(s) 171, 494, 505, 567, 678, 977
AfaI GTAC 2 cut(s) 842, 866
AflIII ACRYGT 1 cut(s) 379
AgsI TTSAA 3 cut(s) 572, 629, 667
AjnI CCWGG 2 cut(s) 202, 780
AjuI GAANNNNNNNTTGG 2 cut(s) 369, 401
AleI CACNNNNGTG 1 cut(s) 676
AluBI AGCT 7 cut(s) 107, 158, 221, 606, 708, 931, 961
AluI AGCT 7 cut(s) 107, 158, 221, 606, 708, 931, 961
Alw21I GWGCWC 2 cut(s) 421, 608
Alw26I GTCTC 2 cut(s) 60, 637
AlwI GGATC 3 cut(s) 236, 271, 799
ApeKI GCWGC 4 cut(s) 155, 166, 221, 811
ArsI GACNNNNNNTTYG 2 cut(s) 967, 999
AseI ATTAAT 1 cut(s) 636
Asp700I GAANNNNTTC 1 cut(s) 381
AspS9I GGNCC 1 cut(s) 778
AsuC2I CCSGG 1 cut(s) 941
AsuHPI GGTGA 2 cut(s) 463, 811
AsuII TTCGAA 1 cut(s) 28
AvaII GGWCC 1 cut(s) 778
AxyI CCTNAGG 1 cut(s) 12
BanII GRGCYC 3 cut(s) 608, 893, 902
Bbv12I GWGCWC 2 cut(s) 421, 608
BbvI GCAGC 4 cut(s) 153, 167, 208, 823
BccI CCATC 3 cut(s) 430, 790, 919
BceAI ACGGC 1 cut(s) 348
BciT130I CCWGG 2 cut(s) 204, 782
BciVI GTATCC 2 cut(s) 105, 412
BcnI CCSGG 1 cut(s) 941
BcoDI GTCTC 2 cut(s) 60, 637
BfuI GTATCC 2 cut(s) 105, 412
BisI GCNGC 4 cut(s) 156, 167, 222, 812
BlsI GCNGC 4 cut(s) 157, 168, 223, 813
BmcAI AGTACT 1 cut(s) 842
Bme1390I CCNGG 3 cut(s) 204, 782, 941
Bme18I GGWCC 1 cut(s) 778
BmgT120I GGNCC 1 cut(s) 778
BmiI GGNNCC 1 cut(s) 899
BmrFI CCNGG 3 cut(s) 204, 782, 941
BmsI GCATC 1 cut(s) 927
BplI GAGNNNNNCTC 2 cut(s) 920, 952
Bpu10I CCTNAGC 1 cut(s) 927
Bpu14I TTCGAA 1 cut(s) 28
BpuEI CTTGAG 1 cut(s) 302
BpuMI CCSGG 1 cut(s) 941
Bsa29I ATCGAT 1 cut(s) 794
BsaAI YACGTR 1 cut(s) 93
BsaI GGTCTC 2 cut(s) 60, 637
BsaJI CCNNGG 4 cut(s) 130, 834, 893, 939
Bse118I RCCGGY 1 cut(s) 79
Bse1I ACTGG 1 cut(s) 37
Bse21I CCTNAGG 1 cut(s) 12
Bse3DI GCAATG 1 cut(s) 828
BseBI CCWGG 2 cut(s) 204, 782
BseCI ATCGAT 1 cut(s) 794
BseDI CCNNGG 4 cut(s) 130, 834, 893, 939
BseMI GCAATG 1 cut(s) 828
BseMII CTCAG 4 cut(s) 26, 714, 918, 919
BseNI ACTGG 1 cut(s) 37
BseRI GAGGAG 1 cut(s) 821
BseXI GCAGC 4 cut(s) 153, 167, 208, 823
BsgI GTGCAG 1 cut(s) 330
Bsh1236I CGCG 1 cut(s) 381
BshVI ATCGAT 1 cut(s) 794
BsiHKAI GWGCWC 2 cut(s) 421, 608
BsiSI CCGG 2 cut(s) 80, 941
BsmAI GTCTC 2 cut(s) 60, 637
Bso31I GGTCTC 2 cut(s) 60, 637
Bsp119I TTCGAA 1 cut(s) 28
Bsp1286I GDGCHC 4 cut(s) 421, 608, 893, 902
Bsp1407I TGTACA 1 cut(s) 864
Bsp143I GATC 4 cut(s) 241, 271, 276, 791
Bsp19I CCATGG 1 cut(s) 834
BspACI CCGC 1 cut(s) 335
BspCNI CTCAG 4 cut(s) 25, 715, 918, 919
BspDI ATCGAT 1 cut(s) 794
BspFNI CGCG 1 cut(s) 381
BspHI TCATGA 1 cut(s) 208
BspLI GGNNCC 1 cut(s) 899
BspPI GGATC 3 cut(s) 236, 271, 799
BspT104I TTCGAA 1 cut(s) 28
BspTNI GGTCTC 2 cut(s) 60, 637
BsrDI GCAATG 1 cut(s) 828
BsrFI RCCGGY 1 cut(s) 79
BsrGI TGTACA 1 cut(s) 864
BsrI ACTGG 1 cut(s) 37
BssAI RCCGGY 1 cut(s) 79
BssECI CCNNGG 4 cut(s) 130, 834, 893, 939
BssMI GATC 4 cut(s) 241, 271, 276, 791
BssT1I CCWWGG 3 cut(s) 130, 834, 893
Bst2UI CCWGG 2 cut(s) 204, 782
Bst4CI ACNGT 1 cut(s) 873
Bst6I CTCTTC 1 cut(s) 588
BstAUI TGTACA 1 cut(s) 864
BstBAI YACGTR 1 cut(s) 93
BstBI TTCGAA 1 cut(s) 28
BstC8I GCNNGC 2 cut(s) 81, 577
BstDEI CTNAG 6 cut(s) 12, 674, 723, 769, 905, 927
BstDSI CCRYGG 1 cut(s) 834
BstFNI CGCG 1 cut(s) 381
BstKTI GATC 4 cut(s) 244, 274, 279, 794
BstMAI GTCTC 2 cut(s) 60, 637
BstMBI GATC 4 cut(s) 241, 271, 276, 791
BstMWI GCNNNNNNNGC 3 cut(s) 897, 906, 915
BstNI CCWGG 2 cut(s) 204, 782
BstNSI RCATGY 4 cut(s) 466, 484, 579, 821
BstSCI CCNGG 3 cut(s) 202, 780, 939
BstUI CGCG 1 cut(s) 381
BstV1I GCAGC 4 cut(s) 153, 167, 208, 823
BstX2I RGATCY 1 cut(s) 276
BstXI CCANNNNNNTGG 1 cut(s) 788
BstYI RGATCY 1 cut(s) 276
Bsu15I ATCGAT 1 cut(s) 794
Bsu36I CCTNAGG 1 cut(s) 12
BsuI GTATCC 2 cut(s) 105, 412
BsuTUI ATCGAT 1 cut(s) 794
BtgI CCRYGG 1 cut(s) 834
Cac8I GCNNGC 2 cut(s) 81, 577
CciI TCATGA 1 cut(s) 208
Cfr10I RCCGGY 1 cut(s) 79
Cfr13I GGNCC 1 cut(s) 778
ClaI ATCGAT 1 cut(s) 794
Csp6I GTAC 2 cut(s) 841, 865
CviQI GTAC 2 cut(s) 841, 865
DdeI CTNAG 6 cut(s) 12, 674, 723, 769, 905, 927
DpnI GATC 4 cut(s) 243, 273, 278, 793
DpnII GATC 4 cut(s) 241, 271, 276, 791
Eam1104I CTCTTC 1 cut(s) 588
EarI CTCTTC 1 cut(s) 588
Ecl136II GAGCTC 1 cut(s) 606
Eco130I CCWWGG 3 cut(s) 130, 834, 893
Eco24I GRGCYC 3 cut(s) 608, 893, 902
Eco31I GGTCTC 2 cut(s) 60, 637
Eco32I GATATC 1 cut(s) 456
Eco47I GGWCC 1 cut(s) 778
Eco53kI GAGCTC 1 cut(s) 606
Eco57I CTGAAG 6 cut(s) 171, 494, 505, 567, 678, 977
Eco81I CCTNAGG 1 cut(s) 12
EcoICRI GAGCTC 1 cut(s) 606
EcoRII CCWGG 2 cut(s) 202, 780
EcoRV GATATC 1 cut(s) 456
EcoT14I CCWWGG 3 cut(s) 130, 834, 893
EcoT38I GRGCYC 3 cut(s) 608, 893, 902
ErhI CCWWGG 3 cut(s) 130, 834, 893
FauI CCCGC 1 cut(s) 328
FauNDI CATATG 1 cut(s) 117
Fnu4HI GCNGC 4 cut(s) 156, 167, 222, 812
FriOI GRGCYC 3 cut(s) 608, 893, 902
Fsp4HI GCNGC 4 cut(s) 156, 167, 222, 812
GluI GCNGC 4 cut(s) 156, 167, 222, 812
HapII CCGG 2 cut(s) 80, 941
HinfI GANTC 1 cut(s) 557
HpaII CCGG 2 cut(s) 80, 941
HphI GGTGA 2 cut(s) 463, 811
Hpy166II GTNNAC 1 cut(s) 506
Hpy188I TCNGA 6 cut(s) 276, 562, 642, 724, 957, 992
Hpy188III TCNNGA 7 cut(s) 14, 98, 149, 209, 236, 554, 973
Hpy8I GTNNAC 1 cut(s) 506
HpyAV CCTTC 2 cut(s) 261, 653
HpyCH4III ACNGT 1 cut(s) 873
HpyCH4IV ACGT 1 cut(s) 92
HpyCH4V TGCA 7 cut(s) 183, 311, 321, 414, 579, 821, 918
HpyF10VI GCNNNNNNNGC 3 cut(s) 897, 906, 915
HpyF3I CTNAG 6 cut(s) 12, 674, 723, 769, 905, 927
HpySE526I ACGT 1 cut(s) 92
KroI GCCGGC 1 cut(s) 79
KroNI GCCGGC 1 cut(s) 81
Kzo9I GATC 4 cut(s) 241, 271, 276, 791
LmnI GCTCC 4 cut(s) 174, 218, 808, 897
Lsp1109I GCAGC 4 cut(s) 153, 167, 208, 823
LweI GCATC 1 cut(s) 927
MaeII ACGT 1 cut(s) 92
MaeIII GTNAC 4 cut(s) 328, 515, 669, 799
MalI GATC 4 cut(s) 243, 273, 278, 793
MboI GATC 4 cut(s) 241, 271, 276, 791
MboII GAAGA 4 cut(s) 605, 617, 768, 838
MflI RGATCY 1 cut(s) 276
MhlI GDGCHC 4 cut(s) 421, 608, 893, 902
MluCI AATT 2 cut(s) 584, 633
MluI ACGCGT 1 cut(s) 379
MlyI GAGTC 1 cut(s) 566
MmeI TCCRAC 1 cut(s) 729
MnlI CCTC 9 cut(s) 21, 210, 277, 523, 591, 718, 751, 769, 799
MroNI GCCGGC 1 cut(s) 79
MroXI GAANNNNTTC 1 cut(s) 381
MseI TTAA 2 cut(s) 494, 636
MslI CAYNNNNRTG 2 cut(s) 326, 676
MspI CCGG 2 cut(s) 80, 941
MspR9I CCNGG 3 cut(s) 204, 782, 941
MvaI CCWGG 2 cut(s) 204, 782
MvnI CGCG 1 cut(s) 381
MwoI GCNNNNNNNGC 3 cut(s) 897, 906, 915
NaeI GCCGGC 1 cut(s) 81
NciI CCSGG 1 cut(s) 941
NcoI CCATGG 1 cut(s) 834
NdeI CATATG 1 cut(s) 117
NdeII GATC 4 cut(s) 241, 271, 276, 791
NgoMIV GCCGGC 1 cut(s) 79
NlaIV GGNNCC 1 cut(s) 899
NmuCI GTSAC 3 cut(s) 328, 669, 799
NspI RCATGY 4 cut(s) 466, 484, 579, 821
NspV TTCGAA 1 cut(s) 28
OliI CACNNNNGTG 1 cut(s) 676
PaeI GCATGC 1 cut(s) 579
PagI TCATGA 1 cut(s) 208
PdiI GCCGGC 1 cut(s) 81
PdmI GAANNNNTTC 1 cut(s) 381
PflFI GACNNNGTC 1 cut(s) 873
PkrI GCNGC 4 cut(s) 157, 168, 223, 813
PleI GAGTC 1 cut(s) 565
PpsI GAGTC 1 cut(s) 565
Ppu21I YACGTR 1 cut(s) 93
PshBI ATTAAT 1 cut(s) 636
PsiI TTATAA 2 cut(s) 444, 997
Psp124BI GAGCTC 1 cut(s) 608
Psp6I CCWGG 2 cut(s) 202, 780
PspGI CCWGG 2 cut(s) 202, 780
PspN4I GGNNCC 1 cut(s) 899
PspPI GGNCC 1 cut(s) 778
PsuI RGATCY 1 cut(s) 276
PsyI GACNNNGTC 1 cut(s) 873
RsaI GTAC 2 cut(s) 842, 866
RsaNI GTAC 2 cut(s) 841, 865
RseI CAYNNNNRTG 2 cut(s) 326, 676
SacI GAGCTC 1 cut(s) 608
SaqAI TTAA 2 cut(s) 494, 636
SatI GCNGC 4 cut(s) 156, 167, 222, 812
Sau3AI GATC 4 cut(s) 241, 271, 276, 791
Sau96I GGNCC 1 cut(s) 778
ScaI AGTACT 1 cut(s) 842
SchI GAGTC 1 cut(s) 566
ScrFI CCNGG 3 cut(s) 204, 782, 941
SduI GDGCHC 4 cut(s) 421, 608, 893, 902
SfaNI GCATC 1 cut(s) 927
SfuI TTCGAA 1 cut(s) 28
SinI GGWCC 1 cut(s) 778
SmiMI CAYNNNNRTG 2 cut(s) 326, 676
SmlI CTYRAG 1 cut(s) 281
SmoI CTYRAG 1 cut(s) 281
SphI GCATGC 1 cut(s) 579
Sse9I AATT 2 cut(s) 584, 633
SsiI CCGC 1 cut(s) 335
SstI GAGCTC 1 cut(s) 608
StyD4I CCNGG 3 cut(s) 202, 780, 939
StyI CCWWGG 3 cut(s) 130, 834, 893
TaaI ACNGT 1 cut(s) 873
TaiI ACGT 1 cut(s) 95
TaqI TCGA 3 cut(s) 28, 227, 794
TasI AATT 2 cut(s) 584, 633
TatI WGTACW 2 cut(s) 840, 864
Tru1I TTAA 2 cut(s) 494, 636
Tru9I TTAA 2 cut(s) 494, 636
TseFI GTSAC 3 cut(s) 328, 669, 799
TseI GCWGC 4 cut(s) 155, 166, 221, 811
Tsp45I GTSAC 3 cut(s) 328, 669, 799
TspDTI ATGAA 2 cut(s) 380, 838
Tth111I GACNNNGTC 1 cut(s) 873
VpaK11BI GGWCC 1 cut(s) 778
VspI ATTAAT 1 cut(s) 636
XceI RCATGY 4 cut(s) 466, 484, 579, 821
XmnI GAANNNNTTC 1 cut(s) 381
ZrmI AGTACT 1 cut(s) 842
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.