Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0004172

Physical Location & Seq

Genomic Coordinates Forward (+)

9126263 .. 9127987

Gene Structure 1725 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G21320.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 519 bp

ATGCGAATTTTGTGTGATGCTTGTGAGAGCGCCGCCGCTATCGTCTTTTGCGCCGCCGACGAAGCTGCCCTCTGTTGCTCCTGCGACGAAAAAGTTCATAAGTGCAACAAGCTGGCTAGTCGGCATCTTCGTGTAGGCTTAGCTGATCCGAGTAATGCACCAAGCTGTGACATATGCGAAAATGCACCCGCATTCTTTTACTGTGAGATAGATGGTAGTTCCCTTTGTCTACAATGTGATATGGTGGTACATGTTGGTGGGAAGAGAACACATAGGCGGTTTCTATTACTGAGACAGAGAATTGAGTTTCCAGGCGATAAGCCTAATCATGCTGACCAACTGGGACTACGGTGTCAAAAGGCTTCCTCTGGTCGTGGTCAAGAATCAAATGGGAATGGTGATCATGATCATAATATGATCGATCTTAACTCCAATCCTCAAAGAGTACACGAGCCTGGATCACATAACCAAGAGGAGGGTATTGATGTAAATAACGCAAACAATCACGAGCATGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000988 GO:0000989 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0008150 GO:0009266 GO:0009314 GO:0009408 GO:0009416 GO:0009628 GO:0009637 GO:0009889 GO:0009987 GO:0010099 GO:0010100 GO:0010286 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0033554 GO:0034605 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048519 GO:0048580 GO:0048581 GO:0048583 GO:0048585 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051171 GO:0051239 GO:0051241 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0070370 GO:0071214 GO:0071478 GO:0071482 GO:0071483 GO:0080090 GO:0104004 GO:0140110 GO:1903506 GO:2000026 GO:2000030 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-B_box

Protein Analysis

172

Amino Acids

18.89

Weight (kDa)

5.72

Isoelectric Point (pI)

55.25

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-B_box	PF00643	53 - 92	6.1e-06	B-box zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004172)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G21320 AT4G38960 AT4G38960 AT4G38960 AT4G38960 AT4G38960 AT4G38960
fragaria_vesca	FvH4_1g12110 FvH4_1g12110 FvH4_1g12110
malus_domestica	MD00G1039900.v1.1 MD02G1110700.v1.1 MD10G1063500.v1.1 MD15G1248300.v1.1
prunus_persica	Prupe.7G165700_v2.0.a1 Prupe.8G085000_v2.0.a1
pyrus_communis	pycom02g10660 pycom05g04650 pycom10g04900 pycom15g21870
rosa_chinensis	RchiOBHm_Chr2g0099771
rosa_laevigata	RLG00000016912
rosa_multiflora	Rmu_sc0008864.1_g000010 Rmu_sc0036064.1_g000001
rosa_roxburghii	Rroxscaffold_2G00142780
rosa_rugosa	Rorug02G0082900 Rorug02G0083000 Rorug02G0083100
rosa_samantha	Rh2AG132600 Rh2BG135400 Rh2CG136700 Rh2DG137200
rosa_wichuraiana	Rw2G010260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	351
AccI	GTMKAC	1 cut(s)	229
AciI	CCGC	5 cut(s)	33, 36, 54, 189, 277
AclWI	GGATC	2 cut(s)	140, 466
AcsI	RAATTY	1 cut(s)	6
AfaI	GTAC	2 cut(s)	249, 447
AfiI	CCNNNNNNNGG	1 cut(s)	475
AflIII	ACRYGT	1 cut(s)	250
AjnI	CCWGG	2 cut(s)	310, 454
AluBI	AGCT	4 cut(s)	65, 112, 143, 165
AluI	AGCT	4 cut(s)	65, 112, 143, 165
Alw26I	GTCTC	1 cut(s)	286
AlwI	GGATC	2 cut(s)	140, 466
ApeKI	GCWGC	1 cut(s)	65
ApoI	RAATTY	1 cut(s)	6
Asp700I	GAANNNNTTC	1 cut(s)	93
AspLEI	GCGC	2 cut(s)	32, 53
AsuHPI	GGTGA	1 cut(s)	410
BauI	CACGAG	2 cut(s)	449, 506
BbvI	GCAGC	1 cut(s)	52
BccI	CCATC	1 cut(s)	206
BcgI	CGANNNNNNTGC	2 cut(s)	47, 81
BciT130I	CCWGG	2 cut(s)	312, 456
BclI	TGATCA	2 cut(s)	400, 406
BcoDI	GTCTC	1 cut(s)	286
BfaI	CTAG	1 cut(s)	117
BfoI	RGCGCY	1 cut(s)	33
BisI	GCNGC	4 cut(s)	33, 36, 54, 66
BlpI	GCTNAGC	1 cut(s)	139
BlsI	GCNGC	4 cut(s)	34, 37, 55, 67
Bme1390I	CCNGG	2 cut(s)	312, 456
BmrFI	CCNGG	2 cut(s)	312, 456
BmrI	ACTGGG	1 cut(s)	350
BmsI	GCATC	2 cut(s)	7, 133
BmuI	ACTGGG	1 cut(s)	350
Bpu1102I	GCTNAGC	1 cut(s)	139
Bsa29I	ATCGAT	1 cut(s)	420
BsaBI	GATNNNNATC	1 cut(s)	405
Bsc4I	CCNNNNNNNGG	1 cut(s)	475
Bse1I	ACTGG	1 cut(s)	345
Bse8I	GATNNNNATC	1 cut(s)	405
BseBI	CCWGG	2 cut(s)	312, 456
BseCI	ATCGAT	1 cut(s)	420
BseJI	GATNNNNATC	1 cut(s)	405
BseLI	CCNNNNNNNGG	1 cut(s)	475
BseMII	CTCAG	1 cut(s)	281
BseNI	ACTGG	1 cut(s)	345
BseRI	GAGGAG	1 cut(s)	488
BseXI	GCAGC	1 cut(s)	52
BshVI	ATCGAT	1 cut(s)	420
BslFI	GGGAC	1 cut(s)	357
BslI	CCNNNNNNNGG	1 cut(s)	475
BsmAI	GTCTC	1 cut(s)	286
BsmFI	GGGAC	1 cut(s)	357
BsmI	GAATGC	1 cut(s)	191
Bsp143I	GATC	6 cut(s)	145, 400, 406, 417, 421, 458
Bsp1720I	GCTNAGC	1 cut(s)	139
BspACI	CCGC	5 cut(s)	33, 36, 54, 189, 277
BspCNI	CTCAG	1 cut(s)	282
BspDI	ATCGAT	1 cut(s)	420
BspHI	TCATGA	1 cut(s)	403
BspPI	GGATC	2 cut(s)	140, 466
BsrI	ACTGG	1 cut(s)	345
BssMI	GATC	6 cut(s)	145, 400, 406, 417, 421, 458
BssSI	CACGAG	2 cut(s)	449, 506
Bst2BI	CACGAG	2 cut(s)	449, 506
Bst2UI	CCWGG	2 cut(s)	312, 456
Bst4CI	ACNGT	2 cut(s)	203, 351
Bst6I	CTCTTC	1 cut(s)	257
BstC8I	GCNNGC	1 cut(s)	114
BstDEI	CTNAG	2 cut(s)	139, 290
BstH2I	RGCGCY	1 cut(s)	33
BstHHI	GCGC	2 cut(s)	32, 53
BstKTI	GATC	6 cut(s)	148, 403, 409, 420, 424, 461
BstMAI	GTCTC	1 cut(s)	286
BstMBI	GATC	6 cut(s)	145, 400, 406, 417, 421, 458
BstMWI	GCNNNNNNNGC	1 cut(s)	62
BstNI	CCWGG	2 cut(s)	312, 456
BstNSI	RCATGY	1 cut(s)	254
BstSCI	CCNGG	2 cut(s)	310, 454
BstV1I	GCAGC	1 cut(s)	52
Bsu15I	ATCGAT	1 cut(s)	420
BsuTUI	ATCGAT	1 cut(s)	420
Cac8I	GCNNGC	1 cut(s)	114
CciI	TCATGA	1 cut(s)	403
CfoI	GCGC	2 cut(s)	32, 53
ClaI	ATCGAT	1 cut(s)	420
Csp6I	GTAC	2 cut(s)	248, 446
CviAII	CATG	4 cut(s)	251, 329, 404, 512
CviJI	RGCY	9 cut(s)	65, 112, 116, 138, 143, 165, 322, 362, 454
CviKI_1	RGCY	9 cut(s)	65, 112, 116, 138, 143, 165, 322, 362, 454
CviQI	GTAC	2 cut(s)	248, 446
DdeI	CTNAG	2 cut(s)	139, 290
DpnI	GATC	6 cut(s)	147, 402, 408, 419, 423, 460
DpnII	GATC	6 cut(s)	145, 400, 406, 417, 421, 458
DrdI	GACNNNNNNGTC	1 cut(s)	351
DseDI	GACNNNNNNGTC	1 cut(s)	351
Eam1104I	CTCTTC	1 cut(s)	257
EarI	CTCTTC	1 cut(s)	257
EcoRII	CCWGG	2 cut(s)	310, 454
FaeI	CATG	4 cut(s)	254, 332, 407, 515
FaqI	GGGAC	1 cut(s)	357
FatI	CATG	4 cut(s)	250, 328, 403, 511
FauI	CCCGC	1 cut(s)	196
FauNDI	CATATG	1 cut(s)	173
FbaI	TGATCA	2 cut(s)	400, 406
FblI	GTMKAC	1 cut(s)	229
Fnu4HI	GCNGC	4 cut(s)	33, 36, 54, 66
Fsp4HI	GCNGC	4 cut(s)	33, 36, 54, 66
FspBI	CTAG	1 cut(s)	117
GlaI	GCGC	2 cut(s)	31, 52
GluI	GCNGC	4 cut(s)	33, 36, 54, 66
HaeII	RGCGCY	1 cut(s)	33
HhaI	GCGC	2 cut(s)	32, 53
Hin1II	CATG	4 cut(s)	254, 332, 407, 515
Hin6I	GCGC	2 cut(s)	30, 51
HinP1I	GCGC	2 cut(s)	30, 51
HinfI	GANTC	1 cut(s)	383
HphI	GGTGA	1 cut(s)	410
Hpy166II	GTNNAC	2 cut(s)	230, 448
Hpy188I	TCNGA	1 cut(s)	150
Hpy188III	TCNNGA	3 cut(s)	380, 404, 506
Hpy8I	GTNNAC	2 cut(s)	230, 448
Hpy99I	CGWCG	2 cut(s)	62, 89
HpyCH4III	ACNGT	2 cut(s)	203, 351
HpyCH4V	TGCA	3 cut(s)	105, 158, 185
HpyF10VI	GCNNNNNNNGC	1 cut(s)	62
HpyF3I	CTNAG	2 cut(s)	139, 290
Hsp92II	CATG	4 cut(s)	254, 332, 407, 515
HspAI	GCGC	2 cut(s)	30, 51
Ksp22I	TGATCA	2 cut(s)	400, 406
Kzo9I	GATC	6 cut(s)	145, 400, 406, 417, 421, 458
LmnI	GCTCC	1 cut(s)	83
LpnPI	CCDG	8 cut(s)	94, 98, 297, 324, 326, 354, 441, 468
Lsp1109I	GCAGC	1 cut(s)	52
LweI	GCATC	2 cut(s)	7, 133
MaeI	CTAG	1 cut(s)	117
MaeIII	GTNAC	1 cut(s)	167
MalI	GATC	6 cut(s)	147, 402, 408, 419, 423, 460
MboI	GATC	6 cut(s)	145, 400, 406, 417, 421, 458
MboII	GAAGA	2 cut(s)	119, 274
MluCI	AATT	2 cut(s)	6, 300
MnlI	CCTC	5 cut(s)	80, 376, 447, 466, 469
MroXI	GAANNNNTTC	1 cut(s)	93
MseI	TTAA	1 cut(s)	426
MslI	CAYNNNNRTG	3 cut(s)	129, 255, 510
MspR9I	CCNGG	2 cut(s)	312, 456
Mva1269I	GAATGC	1 cut(s)	191
MvaI	CCWGG	2 cut(s)	312, 456
MwoI	GCNNNNNNNGC	1 cut(s)	62
NdeI	CATATG	1 cut(s)	173
NdeII	GATC	6 cut(s)	145, 400, 406, 417, 421, 458
NlaIII	CATG	4 cut(s)	254, 332, 407, 515
NmuCI	GTSAC	1 cut(s)	167
NspI	RCATGY	1 cut(s)	254
PagI	TCATGA	1 cut(s)	403
PciI	ACATGT	1 cut(s)	250
PcsI	WCGNNNNNNNCGW	1 cut(s)	127
PctI	GAATGC	1 cut(s)	191
PdmI	GAANNNNTTC	1 cut(s)	93
PfeI	GAWTC	1 cut(s)	383
PkrI	GCNGC	4 cut(s)	34, 37, 55, 67
PscI	ACATGT	1 cut(s)	250
Psp6I	CCWGG	2 cut(s)	310, 454
PspGI	CCWGG	2 cut(s)	310, 454
RsaI	GTAC	2 cut(s)	249, 447
RsaNI	GTAC	2 cut(s)	248, 446
RseI	CAYNNNNRTG	3 cut(s)	129, 255, 510
SaqAI	TTAA	1 cut(s)	426
SatI	GCNGC	4 cut(s)	33, 36, 54, 66
Sau3AI	GATC	6 cut(s)	145, 400, 406, 417, 421, 458
ScrFI	CCNGG	2 cut(s)	312, 456
SetI	ASST	4 cut(s)	67, 114, 145, 167
SfaNI	GCATC	2 cut(s)	7, 133
SmiMI	CAYNNNNRTG	3 cut(s)	129, 255, 510
Sse9I	AATT	2 cut(s)	6, 300
SsiI	CCGC	5 cut(s)	33, 36, 54, 189, 277
SspMI	CTAG	1 cut(s)	117
StyD4I	CCNGG	2 cut(s)	310, 454
TaaI	ACNGT	2 cut(s)	203, 351
TaqI	TCGA	1 cut(s)	420
TasI	AATT	2 cut(s)	6, 300
TatI	WGTACW	1 cut(s)	445
TauI	GCSGC	3 cut(s)	35, 38, 56
TfiI	GAWTC	1 cut(s)	383
Tru1I	TTAA	1 cut(s)	426
Tru9I	TTAA	1 cut(s)	426
TseFI	GTSAC	1 cut(s)	167
TseI	GCWGC	1 cut(s)	65
Tsp45I	GTSAC	1 cut(s)	167
TspDTI	ATGAA	1 cut(s)	86
XapI	RAATTY	1 cut(s)	6
XceI	RCATGY	1 cut(s)	254
XmiI	GTMKAC	1 cut(s)	229
XmnI	GAANNNNTTC	1 cut(s)	93
XspI	CTAG	1 cut(s)	117

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.