Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0004172

Physical Location & Seq

Genomic Coordinates Forward (+)

20700279 .. 20702516

Gene Structure 2238 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1248300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 558 bp

ATGCGAACACTTTGTGACTCCTGTGAAAGCGCTGCCGCAATCGTGTTTTGCGCTGCCGACGAGGCTGCTCTTTGCCGCGCCTGTGACGAGAAGGTTCATATGTGCAATAAGCTTGCTAGCCGGCATGTTCGGGTTGGTCTTGCAGCTCCCAGTGAAGTTCCCCGCTGCGACATTTGTGAAAATGCACCTGCTTTCTTTTGTTGCGAGATAGATGGAAGTTCCCTGTGTTTGCAATGTGATTTGATTGTTCATGTTGGAGGCAAAAGAATGCATGGAAGATATCTTGTACTGAGACAAAGAGTTGAGTTTCCAGGAGATAAACCTGGTAATATTGAGGACCCAGCTTCCCAACCCACTGATCCAGGCGAGAGCAGAAGAGTACAACAACCCCATCCACCTAGAATGACAATAGGAGAGAACCTGCAAAATCATCGGGTGTCTCCTATTCGTGCTTCAGATGCCAATGCTGATGAGCATGTAAAGATGGATAATAAATTGATTGATTTGAACATGAAGCCTCATCGGATGCATGGACAAGCTTCAAACAAAGAGGACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-B_box

Protein Analysis

186

Amino Acids

20.44

Weight (kDa)

6.3

Isoelectric Point (pI)

62.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004172)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G21320 AT4G38960 AT4G38960 AT4G38960 AT4G38960 AT4G38960 AT4G38960
fragaria_vesca	FvH4_1g12110 FvH4_1g12110 FvH4_1g12110
malus_domestica	MD00G1039900.v1.1 MD02G1110700.v1.1 MD10G1063500.v1.1 MD15G1248300.v1.1
prunus_persica	Prupe.7G165700_v2.0.a1 Prupe.8G085000_v2.0.a1
pyrus_communis	pycom02g10660 pycom05g04650 pycom10g04900 pycom15g21870
rosa_chinensis	RchiOBHm_Chr2g0099771
rosa_laevigata	RLG00000016912
rosa_multiflora	Rmu_sc0008864.1_g000010 Rmu_sc0036064.1_g000001
rosa_roxburghii	Rroxscaffold_2G00142780
rosa_rugosa	Rorug02G0082900 Rorug02G0083000 Rorug02G0083100
rosa_samantha	Rh2AG132600 Rh2BG135400 Rh2CG136700 Rh2DG137200
rosa_wichuraiana	Rw2G010260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	196
Acc36I	ACCTGC	2 cut(s)	196, 429
AccII	CGCG	1 cut(s)	78
AciI	CCGC	3 cut(s)	36, 76, 163
AclWI	GGATC	1 cut(s)	353
AcuI	CTGAAG	1 cut(s)	438
AdeI	CACNNNGTG	1 cut(s)	14
AfaI	GTAC	2 cut(s)	288, 381
AfeI	AGCGCT	1 cut(s)	31
AgsI	TTSAA	2 cut(s)	508, 543
AjnI	CCWGG	3 cut(s)	310, 322, 361
AluBI	AGCT	4 cut(s)	112, 146, 344, 539
AluI	AGCT	4 cut(s)	112, 146, 344, 539
Alw26I	GTCTC	2 cut(s)	286, 444
AlwI	GGATC	1 cut(s)	353
Aor51HI	AGCGCT	1 cut(s)	31
ApeKI	GCWGC	5 cut(s)	32, 53, 65, 143, 165
AspLEI	GCGC	3 cut(s)	32, 53, 80
AspS9I	GGNCC	1 cut(s)	337
AsuNHI	GCTAGC	1 cut(s)	116
AvaII	GGWCC	1 cut(s)	337
BbvI	GCAGC	5 cut(s)	19, 40, 52, 152, 155
BccI	CCATC	3 cut(s)	206, 399, 478
BcgI	CGANNNNNNTGC	4 cut(s)	47, 81, 413, 447
BciT130I	CCWGG	3 cut(s)	312, 324, 363
BcoDI	GTCTC	2 cut(s)	286, 444
BfaI	CTAG	3 cut(s)	117, 399, 556
BfoI	RGCGCY	1 cut(s)	33
BfuAI	ACCTGC	2 cut(s)	196, 429
BglI	GCCNNNNNGGC	1 cut(s)	62
BisI	GCNGC	7 cut(s)	33, 36, 54, 66, 76, 144, 166
BlsI	GCNGC	7 cut(s)	34, 37, 55, 67, 77, 145, 167
Bme1390I	CCNGG	3 cut(s)	312, 324, 363
Bme18I	GGWCC	1 cut(s)	337
BmgT120I	GGNCC	1 cut(s)	337
BmiI	GGNNCC	1 cut(s)	339
BmrFI	CCNGG	3 cut(s)	312, 324, 363
BmrI	ACTGGG	1 cut(s)	144
BmsI	GCATC	2 cut(s)	448, 516
BmtI	GCTAGC	1 cut(s)	120
BmuI	ACTGGG	1 cut(s)	144
Bse118I	RCCGGY	1 cut(s)	120
Bse1I	ACTGG	1 cut(s)	150
Bse3DI	GCAATG	1 cut(s)	239
BseBI	CCWGG	3 cut(s)	312, 324, 363
BseGI	GGATG	2 cut(s)	391, 531
BseMI	GCAATG	1 cut(s)	239
BseMII	CTCAG	1 cut(s)	281
BseNI	ACTGG	1 cut(s)	150
BseXI	GCAGC	5 cut(s)	19, 40, 52, 152, 155
BseYI	CCCAGC	1 cut(s)	340
Bsh1236I	CGCG	1 cut(s)	78
BsiSI	CCGG	1 cut(s)	121
BsmAI	GTCTC	2 cut(s)	286, 444
BsmI	GAATGC	1 cut(s)	273
Bsp143I	GATC	1 cut(s)	358
BspACI	CCGC	3 cut(s)	36, 76, 163
BspCNI	CTCAG	1 cut(s)	282
BspFNI	CGCG	1 cut(s)	78
BspLI	GGNNCC	1 cut(s)	339
BspMI	ACCTGC	2 cut(s)	196, 429
BspOI	GCTAGC	1 cut(s)	120
BspPI	GGATC	1 cut(s)	353
BsrDI	GCAATG	1 cut(s)	239
BsrFI	RCCGGY	1 cut(s)	120
BsrI	ACTGG	1 cut(s)	150
BssAI	RCCGGY	1 cut(s)	120
BssMI	GATC	1 cut(s)	358
Bst2UI	CCWGG	3 cut(s)	312, 324, 363
Bst6I	CTCTTC	1 cut(s)	370
BstC8I	GCNNGC	3 cut(s)	114, 118, 122
BstDEI	CTNAG	1 cut(s)	290
BstF5I	GGATG	2 cut(s)	391, 531
BstFNI	CGCG	1 cut(s)	78
BstH2I	RGCGCY	1 cut(s)	33
BstHHI	GCGC	3 cut(s)	32, 53, 80
BstKTI	GATC	1 cut(s)	361
BstMAI	GTCTC	2 cut(s)	286, 444
BstMBI	GATC	1 cut(s)	358
BstMWI	GCNNNNNNNGC	2 cut(s)	62, 458
BstNI	CCWGG	3 cut(s)	312, 324, 363
BstNSI	RCATGY	2 cut(s)	128, 479
BstSCI	CCNGG	3 cut(s)	310, 322, 361
BstUI	CGCG	1 cut(s)	78
BstV1I	GCAGC	5 cut(s)	19, 40, 52, 152, 155
BtsCI	GGATG	2 cut(s)	391, 531
BtsIMutI	CAGTG	2 cut(s)	157, 354
BveI	ACCTGC	2 cut(s)	196, 429
Cac8I	GCNNGC	3 cut(s)	114, 118, 122
CfoI	GCGC	3 cut(s)	32, 53, 80
Cfr10I	RCCGGY	1 cut(s)	120
Cfr13I	GGNCC	1 cut(s)	337
CsiI	ACCWGGT	1 cut(s)	322
Csp6I	GTAC	2 cut(s)	287, 380
CviAII	CATG	6 cut(s)	125, 251, 272, 476, 511, 530
CviJI	RGCY	7 cut(s)	65, 112, 120, 146, 344, 517, 539
CviKI_1	RGCY	7 cut(s)	65, 112, 120, 146, 344, 517, 539
CviQI	GTAC	2 cut(s)	287, 380
DdeI	CTNAG	1 cut(s)	290
DpnI	GATC	1 cut(s)	360
DpnII	GATC	1 cut(s)	358
DraIII	CACNNNGTG	1 cut(s)	14
Eam1104I	CTCTTC	1 cut(s)	370
EarI	CTCTTC	1 cut(s)	370
Eco32I	GATATC	1 cut(s)	281
Eco47I	GGWCC	1 cut(s)	337
Eco47III	AGCGCT	1 cut(s)	31
Eco57I	CTGAAG	1 cut(s)	438
EcoO109I	RGGNCCY	1 cut(s)	337
EcoRII	CCWGG	3 cut(s)	310, 322, 361
EcoRV	GATATC	1 cut(s)	281
EcoT22I	ATGCAT	2 cut(s)	273, 531
FaeI	CATG	6 cut(s)	128, 254, 275, 479, 514, 533
FaiI	YATR	8 cut(s)	99, 101, 126, 252, 273, 477, 512, 531
FatI	CATG	6 cut(s)	124, 250, 271, 475, 510, 529
FauI	CCCGC	1 cut(s)	170
FauNDI	CATATG	1 cut(s)	99
Fnu4HI	GCNGC	7 cut(s)	33, 36, 54, 66, 76, 144, 166
FokI	GGATG	2 cut(s)	378, 538
Fsp4HI	GCNGC	7 cut(s)	33, 36, 54, 66, 76, 144, 166
FspBI	CTAG	3 cut(s)	117, 399, 556
GlaI	GCGC	3 cut(s)	31, 52, 79
GluI	GCNGC	7 cut(s)	33, 36, 54, 66, 76, 144, 166
GsaI	CCCAGC	1 cut(s)	344
HaeII	RGCGCY	1 cut(s)	33
HapII	CCGG	1 cut(s)	121
HhaI	GCGC	3 cut(s)	32, 53, 80
Hin1II	CATG	6 cut(s)	128, 254, 275, 479, 514, 533
Hin6I	GCGC	3 cut(s)	30, 51, 78
HinP1I	GCGC	3 cut(s)	30, 51, 78
HindIII	AAGCTT	2 cut(s)	110, 537
HinfI	GANTC	1 cut(s)	17
HpaII	CCGG	1 cut(s)	121
Hpy188I	TCNGA	2 cut(s)	457, 525
Hpy99I	CGWCG	1 cut(s)	62
HpyAV	CCTTC	1 cut(s)	85
HpyCH4V	TGCA	7 cut(s)	105, 143, 185, 232, 271, 424, 529
HpyF10VI	GCNNNNNNNGC	2 cut(s)	62, 458
HpyF3I	CTNAG	1 cut(s)	290
Hsp92II	CATG	6 cut(s)	128, 254, 275, 479, 514, 533
HspAI	GCGC	3 cut(s)	30, 51, 78
KroI	GCCGGC	1 cut(s)	120
KroNI	GCCGGC	1 cut(s)	122
Kzo9I	GATC	1 cut(s)	358
LmnI	GCTCC	1 cut(s)	151
Lsp1109I	GCAGC	5 cut(s)	19, 40, 52, 152, 155
LweI	GCATC	2 cut(s)	448, 516
MabI	ACCWGGT	1 cut(s)	322
MaeI	CTAG	3 cut(s)	117, 399, 556
MaeIII	GTNAC	2 cut(s)	14, 83
MalI	GATC	1 cut(s)	360
MboI	GATC	1 cut(s)	358
MboII	GAAGA	2 cut(s)	288, 387
MluCI	AATT	1 cut(s)	494
MlyI	GAGTC	1 cut(s)	11
MmeI	TCCRAC	1 cut(s)	235
MnlI	CCTC	5 cut(s)	55, 251, 328, 528, 544
Mph1103I	ATGCAT	2 cut(s)	273, 531
MroNI	GCCGGC	1 cut(s)	120
MspA1I	CMGCKG	1 cut(s)	165
MspI	CCGG	1 cut(s)	121
MspR9I	CCNGG	3 cut(s)	312, 324, 363
Mva1269I	GAATGC	1 cut(s)	273
MvaI	CCWGG	3 cut(s)	312, 324, 363
MvnI	CGCG	1 cut(s)	78
MwoI	GCNNNNNNNGC	2 cut(s)	62, 458
NaeI	GCCGGC	1 cut(s)	122
NdeI	CATATG	1 cut(s)	99
NdeII	GATC	1 cut(s)	358
NgoMIV	GCCGGC	1 cut(s)	120
NheI	GCTAGC	1 cut(s)	116
NlaIII	CATG	6 cut(s)	128, 254, 275, 479, 514, 533
NlaIV	GGNNCC	1 cut(s)	339
NmuCI	GTSAC	2 cut(s)	14, 83
NsiI	ATGCAT	2 cut(s)	273, 531
NspI	RCATGY	2 cut(s)	128, 479
PaqCI	CACCTGC	1 cut(s)	196
PctI	GAATGC	1 cut(s)	273
PdiI	GCCGGC	1 cut(s)	122
PfoI	TCCNGGA	1 cut(s)	310
PkrI	GCNGC	7 cut(s)	34, 37, 55, 67, 77, 145, 167
PleI	GAGTC	1 cut(s)	11
PpsI	GAGTC	1 cut(s)	11
PpuMI	RGGWCCY	1 cut(s)	337
Psp5II	RGGWCCY	1 cut(s)	337
Psp6I	CCWGG	3 cut(s)	310, 322, 361
PspFI	CCCAGC	1 cut(s)	340
PspGI	CCWGG	3 cut(s)	310, 322, 361
PspN4I	GGNNCC	1 cut(s)	339
PspPI	GGNCC	1 cut(s)	337
PspPPI	RGGWCCY	1 cut(s)	337
RsaI	GTAC	2 cut(s)	288, 381
RsaNI	GTAC	2 cut(s)	287, 380
SatI	GCNGC	7 cut(s)	33, 36, 54, 66, 76, 144, 166
Sau3AI	GATC	1 cut(s)	358
Sau96I	GGNCC	1 cut(s)	337
SchI	GAGTC	1 cut(s)	11
ScrFI	CCNGG	3 cut(s)	312, 324, 363
SetI	ASST	9 cut(s)	96, 114, 148, 190, 325, 346, 400, 423, 541
SexAI	ACCWGGT	1 cut(s)	322
SfaNI	GCATC	2 cut(s)	448, 516
SinI	GGWCC	1 cut(s)	337
Sse9I	AATT	1 cut(s)	494
SsiI	CCGC	3 cut(s)	36, 76, 163
SspI	AATATT	1 cut(s)	331
SspMI	CTAG	3 cut(s)	117, 399, 556
StyD4I	CCNGG	3 cut(s)	310, 322, 361
TasI	AATT	1 cut(s)	494
TatI	WGTACW	2 cut(s)	286, 379
TauI	GCSGC	2 cut(s)	38, 78
TscAI	CASTG	2 cut(s)	157, 361
TseFI	GTSAC	2 cut(s)	14, 83
TseI	GCWGC	5 cut(s)	32, 53, 65, 143, 165
Tsp45I	GTSAC	2 cut(s)	14, 83
TspDTI	ATGAA	3 cut(s)	86, 239, 527
TspRI	CASTG	2 cut(s)	157, 361
VpaK11BI	GGWCC	1 cut(s)	337
XceI	RCATGY	2 cut(s)	128, 479
XspI	CTAG	3 cut(s)	117, 399, 556
Zsp2I	ATGCAT	2 cut(s)	273, 531

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.