Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0004172

Physical Location & Seq

Genomic Coordinates Forward (+)

5175402 .. 5177516

Gene Structure 2115 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom10g04900.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 744 bp

ATGAAATTTCTCCTCCCTCCCTCACCCCCTTTTGTCTTTTGCCCGTCTCTGAGGAAACCAGAAAATCAATGGCTTTCTGGAGGAGGAAGGAGGGATGAGAACAAGTGGGAAGACAGAATGCGAACGCTTTGTGATGTGTGCGAGAGCGCCGCTGCCATTCTCTTCTGCGCCGCCGACGAGGCCGCCCTCTGCCGTTCCTGCGACGAAAAGGTCCATCTGTGTAATAAACTTGCCAATAGACATGTACGGGTTGGGATAGCCACACCTAGTGACGTTCCTTGCTGTGATATTTGCGAAAATGCACCTGCGTTCTTTTACTGTGAGGTAGATGGTAGTTCTCTTTGCCTGCAGTGTGATATGATTGTACATGTCGGTGGGAAAAGAACCCACGGGAGGTATCTCCTCTTCAGGCAGAGAGTTGAGTTTCCAGGGAATAAGCTTGGCCATTCAGAGGAACTAGGGCTTCAACCACTTGACCAAAAGAAGGTACAAAGGGACCAAAATCAGCTGCCTGATTTAAAAACAGGAGAGAATCAACATAATCACAATGTCTCTCCAACTGCAGTCCTAGACAACAATATTGATGGTGACTACAAGATGGACAATACACCCATTGATCTTAATACCAGGCCCCAAAGAATACACGGTCAAGCTTCAACTAACCAGGAACAGGGTGTGGGTGTTCTCAATGGTGTGAATGATGAATCTGCAAGTGTCGTTCCTGTTCGATCCTTCAGAAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-B_box

Protein Analysis

248

Amino Acids

27.56

Weight (kDa)

6.24

Isoelectric Point (pI)

53.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004172)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G21320 AT4G38960 AT4G38960 AT4G38960 AT4G38960 AT4G38960 AT4G38960
fragaria_vesca	FvH4_1g12110 FvH4_1g12110 FvH4_1g12110
malus_domestica	MD00G1039900.v1.1 MD02G1110700.v1.1 MD10G1063500.v1.1 MD15G1248300.v1.1
prunus_persica	Prupe.7G165700_v2.0.a1 Prupe.8G085000_v2.0.a1
pyrus_communis	pycom02g10660 pycom05g04650 pycom10g04900 pycom15g21870
rosa_chinensis	RchiOBHm_Chr2g0099771
rosa_laevigata	RLG00000016912
rosa_multiflora	Rmu_sc0008864.1_g000010 Rmu_sc0036064.1_g000001
rosa_roxburghii	Rroxscaffold_2G00142780
rosa_rugosa	Rorug02G0082900 Rorug02G0083000 Rorug02G0083100
rosa_samantha	Rh2AG132600 Rh2BG135400 Rh2CG136700 Rh2DG137200
rosa_wichuraiana	Rw2G010260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	313
AasI	GACNNNNNNGTC	1 cut(s)	209
Acc36I	ACCTGC	1 cut(s)	313
AciI	CCGC	3 cut(s)	150, 171, 183
AclWI	GGATC	1 cut(s)	723
AcoI	YGGCCR	1 cut(s)	442
AcsI	RAATTY	1 cut(s)	5
AcuI	CTGAAG	2 cut(s)	391, 718
AdeI	CACNNNGTG	1 cut(s)	269
AfaI	GTAC	3 cut(s)	246, 366, 489
AfiI	CCNNNNNNNGG	4 cut(s)	393, 451, 484, 670
AflIII	ACRYGT	2 cut(s)	241, 367
AgsI	TTSAA	2 cut(s)	467, 657
AjnI	CCWGG	3 cut(s)	427, 626, 663
AluBI	AGCT	3 cut(s)	439, 508, 653
AluI	AGCT	3 cut(s)	439, 508, 653
Alw26I	GTCTC	2 cut(s)	51, 556
AlwI	GGATC	1 cut(s)	723
AoxI	GGCC	3 cut(s)	180, 442, 629
ApeKI	GCWGC	2 cut(s)	152, 508
ApoI	RAATTY	1 cut(s)	5
AspLEI	GCGC	2 cut(s)	149, 170
AspS9I	GGNCC	3 cut(s)	211, 496, 630
AsuHPI	GGTGA	2 cut(s)	15, 599
AvaII	GGWCC	2 cut(s)	211, 496
BalI	TGGCCA	1 cut(s)	444
BarI	GAAGNNNNNNTAC	2 cut(s)	389, 421
BbsI	GAAGAC	1 cut(s)	117
BbvI	GCAGC	2 cut(s)	139, 495
BccI	CCATC	4 cut(s)	222, 323, 578, 592
BceAI	ACGGC	1 cut(s)	177
BciT130I	CCWGG	3 cut(s)	429, 628, 665
BcoDI	GTCTC	2 cut(s)	51, 556
BfaI	CTAG	3 cut(s)	267, 458, 569
BfmI	CTRYAG	2 cut(s)	347, 561
BfoI	RGCGCY	1 cut(s)	150
BfuAI	ACCTGC	1 cut(s)	313
BglI	GCCNNNNNGGC	1 cut(s)	179
BisI	GCNGC	5 cut(s)	150, 153, 171, 183, 509
BlsI	GCNGC	5 cut(s)	151, 154, 172, 184, 510
Bme1390I	CCNGG	3 cut(s)	429, 628, 665
Bme18I	GGWCC	2 cut(s)	211, 496
BmgT120I	GGNCC	3 cut(s)	211, 496, 630
BmiI	GGNNCC	2 cut(s)	497, 632
BmrFI	CCNGG	3 cut(s)	429, 628, 665
BpiI	GAAGAC	1 cut(s)	117
BpmI	CTGGAG	1 cut(s)	99
BsaJI	CCNNGG	2 cut(s)	388, 428
Bsc4I	CCNNNNNNNGG	4 cut(s)	393, 451, 484, 670
BseBI	CCWGG	3 cut(s)	429, 628, 665
BseDI	CCNNGG	2 cut(s)	388, 428
BseGI	GGATG	1 cut(s)	100
BseLI	CCNNNNNNNGG	4 cut(s)	393, 451, 484, 670
BseMII	CTCAG	1 cut(s)	41
BseRI	GAGGAG	2 cut(s)	96, 392
BseXI	GCAGC	2 cut(s)	139, 495
BshFI	GGCC	3 cut(s)	182, 444, 631
BslFI	GGGAC	1 cut(s)	509
BslI	CCNNNNNNNGG	4 cut(s)	393, 451, 484, 670
BsmAI	GTCTC	2 cut(s)	51, 556
BsmBI	CGTCTC	1 cut(s)	51
BsmFI	GGGAC	1 cut(s)	509
BsmI	GAATGC	1 cut(s)	123
BsnI	GGCC	3 cut(s)	182, 444, 631
Bsp1407I	TGTACA	1 cut(s)	364
Bsp143I	GATC	2 cut(s)	616, 728
BspACI	CCGC	3 cut(s)	150, 171, 183
BspANI	GGCC	3 cut(s)	182, 444, 631
BspCNI	CTCAG	1 cut(s)	42
BspLI	GGNNCC	2 cut(s)	497, 632
BspMAI	CTGCAG	2 cut(s)	351, 565
BspMI	ACCTGC	1 cut(s)	313
BspPI	GGATC	1 cut(s)	723
BsrGI	TGTACA	1 cut(s)	364
BssECI	CCNNGG	2 cut(s)	388, 428
BssMI	GATC	2 cut(s)	616, 728
Bst2UI	CCWGG	3 cut(s)	429, 628, 665
Bst4CI	ACNGT	2 cut(s)	320, 647
Bst6I	CTCTTC	2 cut(s)	167, 410
BstAUI	TGTACA	1 cut(s)	364
BstC8I	GCNNGC	1 cut(s)	347
BstDEI	CTNAG	1 cut(s)	50
BstDSI	CCRYGG	1 cut(s)	388
BstF5I	GGATG	1 cut(s)	100
BstH2I	RGCGCY	1 cut(s)	150
BstHHI	GCGC	2 cut(s)	149, 170
BstKTI	GATC	2 cut(s)	619, 731
BstMAI	GTCTC	2 cut(s)	51, 556
BstMBI	GATC	2 cut(s)	616, 728
BstMWI	GCNNNNNNNGC	2 cut(s)	179, 198
BstNI	CCWGG	3 cut(s)	429, 628, 665
BstNSI	RCATGY	2 cut(s)	245, 371
BstSCI	CCNGG	3 cut(s)	427, 626, 663
BstSFI	CTRYAG	2 cut(s)	347, 561
BstV1I	GCAGC	2 cut(s)	139, 495
BstV2I	GAAGAC	1 cut(s)	117
BsuRI	GGCC	3 cut(s)	182, 444, 631
BtgI	CCRYGG	1 cut(s)	388
BtsCI	GGATG	1 cut(s)	100
BtsI	GCAGTG	1 cut(s)	356
BtsIMutI	CAGTG	1 cut(s)	356
BveI	ACCTGC	1 cut(s)	313
Cac8I	GCNNGC	1 cut(s)	347
CfoI	GCGC	2 cut(s)	149, 170
Cfr13I	GGNCC	3 cut(s)	211, 496, 630
Csp6I	GTAC	3 cut(s)	245, 365, 488
CviAII	CATG	2 cut(s)	242, 368
CviJI	RGCY	9 cut(s)	73, 182, 260, 439, 444, 463, 508, 631, 653
CviKI_1	RGCY	9 cut(s)	73, 182, 260, 439, 444, 463, 508, 631, 653
CviQI	GTAC	3 cut(s)	245, 365, 488
DdeI	CTNAG	1 cut(s)	50
DpnI	GATC	2 cut(s)	618, 730
DpnII	GATC	2 cut(s)	616, 728
DraI	TTTAAA	1 cut(s)	519
DraIII	CACNNNGTG	1 cut(s)	269
DrdI	GACNNNNNNGTC	1 cut(s)	209
DseDI	GACNNNNNNGTC	1 cut(s)	209
EaeI	YGGCCR	1 cut(s)	442
Eam1104I	CTCTTC	2 cut(s)	167, 410
EarI	CTCTTC	2 cut(s)	167, 410
Eco47I	GGWCC	2 cut(s)	211, 496
Eco57I	CTGAAG	2 cut(s)	391, 718
EcoO109I	RGGNCCY	1 cut(s)	630
EcoRII	CCWGG	3 cut(s)	427, 626, 663
Esp3I	CGTCTC	1 cut(s)	51
FaeI	CATG	2 cut(s)	245, 371
FaiI	YATR	4 cut(s)	243, 359, 369, 540
FaqI	GGGAC	1 cut(s)	509
FatI	CATG	2 cut(s)	241, 367
Fnu4HI	GCNGC	5 cut(s)	150, 153, 171, 183, 509
FokI	GGATG	1 cut(s)	107
Fsp4HI	GCNGC	5 cut(s)	150, 153, 171, 183, 509
FspBI	CTAG	3 cut(s)	267, 458, 569
GlaI	GCGC	2 cut(s)	148, 169
GluI	GCNGC	5 cut(s)	150, 153, 171, 183, 509
GsuI	CTGGAG	1 cut(s)	99
HaeII	RGCGCY	1 cut(s)	150
HaeIII	GGCC	3 cut(s)	182, 444, 631
HhaI	GCGC	2 cut(s)	149, 170
Hin1II	CATG	2 cut(s)	245, 371
Hin6I	GCGC	2 cut(s)	147, 168
HinP1I	GCGC	2 cut(s)	147, 168
HindIII	AAGCTT	2 cut(s)	437, 651
HinfI	GANTC	2 cut(s)	532, 704
HphI	GGTGA	2 cut(s)	15, 599
Hpy188I	TCNGA	3 cut(s)	51, 451, 737
Hpy188III	TCNNGA	1 cut(s)	78
Hpy99I	CGWCG	2 cut(s)	179, 206
HpyAV	CCTTC	3 cut(s)	81, 478, 742
HpyCH4III	ACNGT	2 cut(s)	320, 647
HpyCH4IV	ACGT	1 cut(s)	273
HpyCH4V	TGCA	4 cut(s)	302, 349, 563, 710
HpyF10VI	GCNNNNNNNGC	2 cut(s)	179, 198
HpyF3I	CTNAG	1 cut(s)	50
HpySE526I	ACGT	1 cut(s)	273
Hsp92II	CATG	2 cut(s)	245, 371
HspAI	GCGC	2 cut(s)	147, 168
Kzo9I	GATC	2 cut(s)	616, 728
Lsp1109I	GCAGC	2 cut(s)	139, 495
MaeI	CTAG	3 cut(s)	267, 458, 569
MaeII	ACGT	1 cut(s)	273
MaeIII	GTNAC	2 cut(s)	269, 587
MalI	GATC	2 cut(s)	618, 730
MboI	GATC	2 cut(s)	616, 728
MboII	GAAGA	3 cut(s)	122, 154, 397
MlsI	TGGCCA	1 cut(s)	444
MluCI	AATT	1 cut(s)	5
MluNI	TGGCCA	1 cut(s)	444
MmeI	TCCRAC	1 cut(s)	581
Mox20I	TGGCCA	1 cut(s)	444
MscI	TGGCCA	1 cut(s)	444
MseI	TTAA	2 cut(s)	518, 621
MslI	CAYNNNNRTG	1 cut(s)	372
Msp20I	TGGCCA	1 cut(s)	444
MspA1I	CMGCKG	2 cut(s)	152, 508
MspR9I	CCNGG	3 cut(s)	429, 628, 665
Mva1269I	GAATGC	1 cut(s)	123
MvaI	CCWGG	3 cut(s)	429, 628, 665
MwoI	GCNNNNNNNGC	2 cut(s)	179, 198
NdeII	GATC	2 cut(s)	616, 728
NlaIII	CATG	2 cut(s)	245, 371
NlaIV	GGNNCC	2 cut(s)	497, 632
NmuCI	GTSAC	2 cut(s)	269, 587
NspI	RCATGY	2 cut(s)	245, 371
PaqCI	CACCTGC	1 cut(s)	313
PciI	ACATGT	2 cut(s)	241, 367
PctI	GAATGC	1 cut(s)	123
PfeI	GAWTC	2 cut(s)	532, 704
PkrI	GCNGC	5 cut(s)	151, 154, 172, 184, 510
PscI	ACATGT	2 cut(s)	241, 367
Psp6I	CCWGG	3 cut(s)	427, 626, 663
PspGI	CCWGG	3 cut(s)	427, 626, 663
PspN4I	GGNNCC	2 cut(s)	497, 632
PspPI	GGNCC	3 cut(s)	211, 496, 630
PstI	CTGCAG	2 cut(s)	351, 565
PvuII	CAGCTG	1 cut(s)	508
RsaI	GTAC	3 cut(s)	246, 366, 489
RsaNI	GTAC	3 cut(s)	245, 365, 488
RseI	CAYNNNNRTG	1 cut(s)	372
SaqAI	TTAA	2 cut(s)	518, 621
SatI	GCNGC	5 cut(s)	150, 153, 171, 183, 509
Sau3AI	GATC	2 cut(s)	616, 728
Sau96I	GGNCC	3 cut(s)	211, 496, 630
ScrFI	CCNGG	3 cut(s)	429, 628, 665
SfcI	CTRYAG	2 cut(s)	347, 561
SinI	GGWCC	2 cut(s)	211, 496
SmiMI	CAYNNNNRTG	1 cut(s)	372
Sse9I	AATT	1 cut(s)	5
SsiI	CCGC	3 cut(s)	150, 171, 183
SspI	AATATT	1 cut(s)	580
SspMI	CTAG	3 cut(s)	267, 458, 569
StyD4I	CCNGG	3 cut(s)	427, 626, 663
TaaI	ACNGT	2 cut(s)	320, 647
TaiI	ACGT	1 cut(s)	276
TaqI	TCGA	1 cut(s)	727
TasI	AATT	1 cut(s)	5
TatI	WGTACW	1 cut(s)	364
TauI	GCSGC	3 cut(s)	152, 173, 185
TfiI	GAWTC	2 cut(s)	532, 704
Tru1I	TTAA	2 cut(s)	518, 621
Tru9I	TTAA	2 cut(s)	518, 621
TscAI	CASTG	1 cut(s)	356
TseFI	GTSAC	2 cut(s)	269, 587
TseI	GCWGC	2 cut(s)	152, 508
Tsp45I	GTSAC	2 cut(s)	269, 587
TspDTI	ATGAA	2 cut(s)	17, 717
TspRI	CASTG	1 cut(s)	356
VpaK11BI	GGWCC	2 cut(s)	211, 496
XapI	RAATTY	1 cut(s)	5
XceI	RCATGY	2 cut(s)	245, 371
XcmI	CCANNNNNNNNNTGG	1 cut(s)	66
XspI	CTAG	3 cut(s)	267, 458, 569

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.