Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0004172

Physical Location & Seq

Genomic Coordinates Forward (+)

6615494 .. 6618532

Gene Structure 3039 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g12110.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 492 bp

ATGCGAACACTGTGTGACGCTTGTGAAAGCGCAGCCGCGATCGTTTTCTGTGCTGCCGACGAAGCTGCTCTTTGCCGTGCCTGTGATGAAAAAGTGCATTTGTGCAATAAGCTTGCTAGCAGACATGTCCGGGTTGGTCTTGCAACTCCCAGTGCTGTTCCCCGCTGTGATATTTGTGAAAATGCACCAGGTAAAAGAACACATGGAAGATACCTTGTACTGAGGCAAAGAGTCCAGTTTCCAGGGGATAAACCTAGTAGTAACGGTGAAGACCCAGCATCCCAACCCCCCATTGACCAAGGTGAGACCAGAAGAGTACAACATCAGCAACCGAGAATGACGATTGGAGATAACCATCAAAATCACAGGGCGTCTCCTGTTCGTCTAGCAGATGCCAATGATGATGGGCATGTAAAGATGGATAATAAGTTAATTGATTTGAACATGAAGCCTAATCGGATGCATGGACAAGCTTCAAAAGAGGACCAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-B_box

Protein Analysis

164

Amino Acids

18.0

Weight (kDa)

8.15

Isoelectric Point (pI)

47.74

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004172)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G21320 AT4G38960 AT4G38960 AT4G38960 AT4G38960 AT4G38960 AT4G38960
fragaria_vesca	FvH4_1g12110 FvH4_1g12110 FvH4_1g12110
malus_domestica	MD00G1039900.v1.1 MD02G1110700.v1.1 MD10G1063500.v1.1 MD15G1248300.v1.1
prunus_persica	Prupe.7G165700_v2.0.a1 Prupe.8G085000_v2.0.a1
pyrus_communis	pycom02g10660 pycom05g04650 pycom10g04900 pycom15g21870
rosa_chinensis	RchiOBHm_Chr2g0099771
rosa_laevigata	RLG00000016912
rosa_multiflora	Rmu_sc0008864.1_g000010 Rmu_sc0036064.1_g000001
rosa_roxburghii	Rroxscaffold_2G00142780
rosa_rugosa	Rorug02G0082900 Rorug02G0083000 Rorug02G0083100
rosa_samantha	Rh2AG132600 Rh2BG135400 Rh2CG136700 Rh2DG137200
rosa_wichuraiana	Rw2G010260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	38
AciI	CCGC	2 cut(s)	36, 163
AcyI	GRCGYC	1 cut(s)	371
AdeI	CACNNNGTG	1 cut(s)	14
AfaI	GTAC	2 cut(s)	219, 318
AflIII	ACRYGT	1 cut(s)	124
AgsI	TTSAA	2 cut(s)	442, 477
AjnI	CCWGG	2 cut(s)	187, 241
AluBI	AGCT	3 cut(s)	65, 112, 473
AluI	AGCT	3 cut(s)	65, 112, 473
Alw26I	GTCTC	2 cut(s)	299, 378
ApeKI	GCWGC	3 cut(s)	32, 53, 65
AspLEI	GCGC	1 cut(s)	32
AspS9I	GGNCC	1 cut(s)	484
AsuC2I	CCSGG	1 cut(s)	131
AsuHPI	GGTGA	2 cut(s)	278, 314
AsuNHI	GCTAGC	1 cut(s)	116
AvaII	GGWCC	1 cut(s)	484
BbsI	GAAGAC	1 cut(s)	276
BbvI	GCAGC	3 cut(s)	40, 44, 52
BccI	CCATC	3 cut(s)	363, 398, 412
BceAI	ACGGC	1 cut(s)	60
BcgI	CGANNNNNNTGC	2 cut(s)	47, 81
BciT130I	CCWGG	2 cut(s)	189, 243
BcnI	CCSGG	1 cut(s)	131
BcoDI	GTCTC	2 cut(s)	299, 378
BfaI	CTAG	3 cut(s)	117, 255, 386
BisI	GCNGC	4 cut(s)	33, 36, 54, 66
BlsI	GCNGC	4 cut(s)	34, 37, 55, 67
Bme1390I	CCNGG	3 cut(s)	131, 189, 243
Bme18I	GGWCC	1 cut(s)	484
BmgT120I	GGNCC	1 cut(s)	484
BmrFI	CCNGG	3 cut(s)	131, 189, 243
BmrI	ACTGGG	1 cut(s)	144
BmsI	GCATC	3 cut(s)	287, 382, 450
BmtI	GCTAGC	1 cut(s)	120
BmuI	ACTGGG	1 cut(s)	144
BpiI	GAAGAC	1 cut(s)	276
BpuMI	CCSGG	1 cut(s)	131
BsaBI	GATNNNNATC	1 cut(s)	354
BsaHI	GRCGYC	1 cut(s)	371
BsaI	GGTCTC	1 cut(s)	299
BsaJI	CCNNGG	2 cut(s)	242, 298
Bse1I	ACTGG	2 cut(s)	150, 235
Bse8I	GATNNNNATC	1 cut(s)	354
BseBI	CCWGG	2 cut(s)	189, 243
BseDI	CCNNGG	2 cut(s)	242, 298
BseGI	GGATG	2 cut(s)	278, 465
BseJI	GATNNNNATC	1 cut(s)	354
BseMII	CTCAG	1 cut(s)	212
BseNI	ACTGG	2 cut(s)	150, 235
BseXI	GCAGC	3 cut(s)	40, 44, 52
BseYI	CCCAGC	1 cut(s)	274
Bsh1236I	CGCG	1 cut(s)	38
Bsh1285I	CGRYCG	1 cut(s)	42
BsiEI	CGRYCG	1 cut(s)	42
BsiSI	CCGG	1 cut(s)	130
BsmAI	GTCTC	2 cut(s)	299, 378
BsmBI	CGTCTC	1 cut(s)	378
Bso31I	GGTCTC	1 cut(s)	299
Bsp143I	GATC	1 cut(s)	39
BspACI	CCGC	2 cut(s)	36, 163
BspCNI	CTCAG	1 cut(s)	213
BspFNI	CGCG	1 cut(s)	38
BspOI	GCTAGC	1 cut(s)	120
BspTNI	GGTCTC	1 cut(s)	299
BsrI	ACTGG	2 cut(s)	150, 235
BssECI	CCNNGG	2 cut(s)	242, 298
BssMI	GATC	1 cut(s)	39
BssNI	GRCGYC	1 cut(s)	371
BssT1I	CCWWGG	1 cut(s)	298
Bst2UI	CCWGG	2 cut(s)	189, 243
Bst4CI	ACNGT	2 cut(s)	12, 266
Bst6I	CTCTTC	1 cut(s)	307
BstACI	GRCGYC	1 cut(s)	371
BstC8I	GCNNGC	2 cut(s)	114, 118
BstDEI	CTNAG	1 cut(s)	221
BstF5I	GGATG	2 cut(s)	278, 465
BstFNI	CGCG	1 cut(s)	38
BstHHI	GCGC	1 cut(s)	32
BstKTI	GATC	1 cut(s)	42
BstMAI	GTCTC	2 cut(s)	299, 378
BstMBI	GATC	1 cut(s)	39
BstMCI	CGRYCG	1 cut(s)	42
BstMWI	GCNNNNNNNGC	1 cut(s)	62
BstNI	CCWGG	2 cut(s)	189, 243
BstNSI	RCATGY	2 cut(s)	128, 413
BstSCI	CCNGG	3 cut(s)	129, 187, 241
BstUI	CGCG	1 cut(s)	38
BstV1I	GCAGC	3 cut(s)	40, 44, 52
BstV2I	GAAGAC	1 cut(s)	276
BtsCI	GGATG	2 cut(s)	278, 465
BtsIMutI	CAGTG	2 cut(s)	8, 157
Cac8I	GCNNGC	2 cut(s)	114, 118
CfoI	GCGC	1 cut(s)	32
Cfr13I	GGNCC	1 cut(s)	484
CseI	GACGC	2 cut(s)	26, 360
CsiI	ACCWGGT	1 cut(s)	187
Csp6I	GTAC	2 cut(s)	218, 317
CviAII	CATG	5 cut(s)	125, 203, 410, 445, 464
CviJI	RGCY	5 cut(s)	35, 65, 112, 451, 473
CviKI_1	RGCY	5 cut(s)	35, 65, 112, 451, 473
CviQI	GTAC	2 cut(s)	218, 317
DdeI	CTNAG	1 cut(s)	221
DpnI	GATC	1 cut(s)	41
DpnII	GATC	1 cut(s)	39
DraIII	CACNNNGTG	1 cut(s)	14
Eam1104I	CTCTTC	1 cut(s)	307
EarI	CTCTTC	1 cut(s)	307
Eco130I	CCWWGG	1 cut(s)	298
Eco31I	GGTCTC	1 cut(s)	299
Eco47I	GGWCC	1 cut(s)	484
EcoRII	CCWGG	2 cut(s)	187, 241
EcoT14I	CCWWGG	1 cut(s)	298
EcoT22I	ATGCAT	1 cut(s)	465
ErhI	CCWWGG	1 cut(s)	298
Esp3I	CGTCTC	1 cut(s)	378
FaeI	CATG	5 cut(s)	128, 206, 413, 448, 467
FaiI	YATR	5 cut(s)	126, 204, 411, 446, 465
FalI	AAGNNNNNCTT	2 cut(s)	54, 86
FatI	CATG	5 cut(s)	124, 202, 409, 444, 463
FauI	CCCGC	1 cut(s)	170
Fnu4HI	GCNGC	4 cut(s)	33, 36, 54, 66
FokI	GGATG	2 cut(s)	265, 472
Fsp4HI	GCNGC	4 cut(s)	33, 36, 54, 66
FspBI	CTAG	3 cut(s)	117, 255, 386
GlaI	GCGC	1 cut(s)	31
GluI	GCNGC	4 cut(s)	33, 36, 54, 66
GsaI	CCCAGC	1 cut(s)	278
HapII	CCGG	1 cut(s)	130
HgaI	GACGC	2 cut(s)	26, 360
HhaI	GCGC	1 cut(s)	32
Hin1I	GRCGYC	1 cut(s)	371
Hin1II	CATG	5 cut(s)	128, 206, 413, 448, 467
Hin6I	GCGC	1 cut(s)	30
HinP1I	GCGC	1 cut(s)	30
HindIII	AAGCTT	2 cut(s)	110, 471
HinfI	GANTC	1 cut(s)	231
HpaII	CCGG	1 cut(s)	130
HphI	GGTGA	2 cut(s)	278, 314
Hpy188I	TCNGA	1 cut(s)	459
Hpy99I	CGWCG	1 cut(s)	62
HpyCH4III	ACNGT	2 cut(s)	12, 266
HpyCH4V	TGCA	5 cut(s)	97, 105, 143, 185, 463
HpyF10VI	GCNNNNNNNGC	1 cut(s)	62
HpyF3I	CTNAG	1 cut(s)	221
Hsp92I	GRCGYC	1 cut(s)	371
Hsp92II	CATG	5 cut(s)	128, 206, 413, 448, 467
HspAI	GCGC	1 cut(s)	30
Kzo9I	GATC	1 cut(s)	39
Lsp1109I	GCAGC	3 cut(s)	40, 44, 52
LweI	GCATC	3 cut(s)	287, 382, 450
MabI	ACCWGGT	1 cut(s)	187
MaeI	CTAG	3 cut(s)	117, 255, 386
MaeIII	GTNAC	2 cut(s)	14, 260
MalI	GATC	1 cut(s)	41
MboI	GATC	1 cut(s)	39
MboII	GAAGA	3 cut(s)	219, 281, 324
MluCI	AATT	1 cut(s)	432
MlyI	GAGTC	1 cut(s)	240
MnlI	CCTC	2 cut(s)	216, 475
Mph1103I	ATGCAT	1 cut(s)	465
MseI	TTAA	1 cut(s)	431
MspA1I	CMGCKG	1 cut(s)	165
MspI	CCGG	1 cut(s)	130
MspR9I	CCNGG	3 cut(s)	131, 189, 243
MvaI	CCWGG	2 cut(s)	189, 243
MvnI	CGCG	1 cut(s)	38
MwoI	GCNNNNNNNGC	1 cut(s)	62
NciI	CCSGG	1 cut(s)	131
NdeII	GATC	1 cut(s)	39
NheI	GCTAGC	1 cut(s)	116
NlaIII	CATG	5 cut(s)	128, 206, 413, 448, 467
NmuCI	GTSAC	1 cut(s)	14
NsiI	ATGCAT	1 cut(s)	465
NspI	RCATGY	2 cut(s)	128, 413
PciI	ACATGT	1 cut(s)	124
PkrI	GCNGC	4 cut(s)	34, 37, 55, 67
Ple19I	CGATCG	1 cut(s)	42
PleI	GAGTC	1 cut(s)	239
PpsI	GAGTC	1 cut(s)	239
PscI	ACATGT	1 cut(s)	124
Psp6I	CCWGG	2 cut(s)	187, 241
PspFI	CCCAGC	1 cut(s)	274
PspGI	CCWGG	2 cut(s)	187, 241
PspPI	GGNCC	1 cut(s)	484
PvuI	CGATCG	1 cut(s)	42
RsaI	GTAC	2 cut(s)	219, 318
RsaNI	GTAC	2 cut(s)	218, 317
SaqAI	TTAA	1 cut(s)	431
SatI	GCNGC	4 cut(s)	33, 36, 54, 66
Sau3AI	GATC	1 cut(s)	39
Sau96I	GGNCC	1 cut(s)	484
SchI	GAGTC	1 cut(s)	240
ScrFI	CCNGG	3 cut(s)	131, 189, 243
SetI	ASST	7 cut(s)	67, 114, 193, 216, 256, 304, 475
SexAI	ACCWGGT	1 cut(s)	187
SfaNI	GCATC	3 cut(s)	287, 382, 450
SinI	GGWCC	1 cut(s)	484
Sse9I	AATT	1 cut(s)	432
SsiI	CCGC	2 cut(s)	36, 163
SspMI	CTAG	3 cut(s)	117, 255, 386
StyD4I	CCNGG	3 cut(s)	129, 187, 241
StyI	CCWWGG	1 cut(s)	298
TaaI	ACNGT	2 cut(s)	12, 266
TasI	AATT	1 cut(s)	432
TatI	WGTACW	2 cut(s)	217, 316
TauI	GCSGC	1 cut(s)	38
Tru1I	TTAA	1 cut(s)	431
Tru9I	TTAA	1 cut(s)	431
TscAI	CASTG	2 cut(s)	15, 157
TseFI	GTSAC	1 cut(s)	14
TseI	GCWGC	3 cut(s)	32, 53, 65
Tsp45I	GTSAC	1 cut(s)	14
TspDTI	ATGAA	2 cut(s)	102, 461
TspRI	CASTG	2 cut(s)	15, 157
VpaK11BI	GGWCC	1 cut(s)	484
XceI	RCATGY	2 cut(s)	128, 413
XspI	CTAG	3 cut(s)	117, 255, 386
Zsp2I	ATGCAT	1 cut(s)	465

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.