Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0004172

Physical Location & Seq

Genomic Coordinates Forward (+)

5487168 .. 5488884

Gene Structure 1717 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g04650.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 612 bp

ATGCGAACGCTTTGTGATGTGTGCGAGAGCGCCGCTGCCATCCTTTTCTGTGCCGCCGACGAGGCCGCCCTTTGCCGTTCCTGTGACGAGAAGGTCCATCTGTGTAATAAACTTGCCAATAGACATGTACGGGTTGGGCTAGCCACACCCAGTGATGTTCCTTGCTGTGATATTTGCGAAAATGCACCTGCGTTCTTTTACTGTGAGGTAGATGGTAGTTCTCTTTGCCTGCAGTGCGATATGATTGTACATGTCGGTGGGAAAAGAACCCATGGGAGGTATCTCCTCTTCAGGCAGAGAGTTGAGGTTTGTGTCTTTCTACTGGAAGTTCGGCTTGGCCGAGGACTTCAACCACTTGACCAAAAGAAGGTACGAAGGGACGAAAATCAGCTGCCCGATGTAAAACCAAAAGAGGGTGAACATAATCACAATATCTCTCCAATTGCAGTCCTAGACAACAATATTGACGGTGACTACAAGATAGACAATACATTGATTGATGTTAATACCAGGCCCCAAAGAATACGCGGGCAAGCTTCAAATAACCAGGAACAGGGTGTGGGTGTTCTAAATGGCGTGAATGACGAATCTGTAAGTGTCGTTCCAGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-B_box

Protein Analysis

204

Amino Acids

22.46

Weight (kDa)

5.68

Isoelectric Point (pI)

43.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004172)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G21320 AT4G38960 AT4G38960 AT4G38960 AT4G38960 AT4G38960 AT4G38960
fragaria_vesca	FvH4_1g12110 FvH4_1g12110 FvH4_1g12110
malus_domestica	MD00G1039900.v1.1 MD02G1110700.v1.1 MD10G1063500.v1.1 MD15G1248300.v1.1
prunus_persica	Prupe.7G165700_v2.0.a1 Prupe.8G085000_v2.0.a1
pyrus_communis	pycom02g10660 pycom05g04650 pycom10g04900 pycom15g21870
rosa_chinensis	RchiOBHm_Chr2g0099771
rosa_laevigata	RLG00000016912
rosa_multiflora	Rmu_sc0008864.1_g000010 Rmu_sc0036064.1_g000001
rosa_roxburghii	Rroxscaffold_2G00142780
rosa_rugosa	Rorug02G0082900 Rorug02G0083000 Rorug02G0083100
rosa_samantha	Rh2AG132600 Rh2BG135400 Rh2CG136700 Rh2DG137200
rosa_wichuraiana	Rw2G010260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	196
AasI	GACNNNNNNGTC	1 cut(s)	92
Acc36I	ACCTGC	1 cut(s)	196
AccII	CGCG	1 cut(s)	528
AciI	CCGC	4 cut(s)	33, 54, 66, 528
AcoI	YGGCCR	1 cut(s)	337
AcuI	CTGAAG	1 cut(s)	274
AdeI	CACNNNGTG	1 cut(s)	152
AfaI	GTAC	3 cut(s)	129, 249, 372
AfiI	CCNNNNNNNGG	4 cut(s)	276, 367, 413, 553
AflIII	ACRYGT	2 cut(s)	124, 250
AgsI	TTSAA	2 cut(s)	350, 540
AjnI	CCWGG	2 cut(s)	509, 546
AjuI	GAANNNNNNNTTGG	2 cut(s)	318, 350
AluBI	AGCT	2 cut(s)	391, 536
AluI	AGCT	2 cut(s)	391, 536
AoxI	GGCC	3 cut(s)	63, 337, 512
ApeKI	GCWGC	2 cut(s)	35, 391
AspLEI	GCGC	1 cut(s)	32
AspS9I	GGNCC	2 cut(s)	94, 513
AsuHPI	GGTGA	2 cut(s)	428, 482
AsuNHI	GCTAGC	1 cut(s)	139
AvaII	GGWCC	1 cut(s)	94
BarI	GAAGNNNNNNTAC	2 cut(s)	272, 304
BbvI	GCAGC	2 cut(s)	22, 378
BccI	CCATC	3 cut(s)	47, 105, 206
BceAI	ACGGC	1 cut(s)	60
BciT130I	CCWGG	2 cut(s)	511, 548
BfaI	CTAG	2 cut(s)	140, 452
BfmI	CTRYAG	1 cut(s)	230
BfoI	RGCGCY	1 cut(s)	33
BfuAI	ACCTGC	1 cut(s)	196
BglI	GCCNNNNNGGC	1 cut(s)	62
BisI	GCNGC	5 cut(s)	33, 36, 54, 66, 392
BlsI	GCNGC	5 cut(s)	34, 37, 55, 67, 393
Bme1390I	CCNGG	2 cut(s)	511, 548
Bme18I	GGWCC	1 cut(s)	94
BmgT120I	GGNCC	2 cut(s)	94, 513
BmiI	GGNNCC	1 cut(s)	515
BmrFI	CCNGG	2 cut(s)	511, 548
BmrI	ACTGGG	1 cut(s)	144
BmtI	GCTAGC	1 cut(s)	143
BmuI	ACTGGG	1 cut(s)	144
BsaJI	CCNNGG	2 cut(s)	271, 340
Bsc4I	CCNNNNNNNGG	4 cut(s)	276, 367, 413, 553
Bse1I	ACTGG	3 cut(s)	150, 327, 605
BseBI	CCWGG	2 cut(s)	511, 548
BseDI	CCNNGG	2 cut(s)	271, 340
BseGI	GGATG	1 cut(s)	39
BseLI	CCNNNNNNNGG	4 cut(s)	276, 367, 413, 553
BseNI	ACTGG	3 cut(s)	150, 327, 605
BseRI	GAGGAG	1 cut(s)	275
BseXI	GCAGC	2 cut(s)	22, 378
Bsh1236I	CGCG	1 cut(s)	528
BshFI	GGCC	3 cut(s)	65, 339, 514
BslFI	GGGAC	1 cut(s)	392
BslI	CCNNNNNNNGG	4 cut(s)	276, 367, 413, 553
BsmFI	GGGAC	1 cut(s)	392
BsnI	GGCC	3 cut(s)	65, 339, 514
Bsp1407I	TGTACA	1 cut(s)	247
Bsp19I	CCATGG	1 cut(s)	271
BspACI	CCGC	4 cut(s)	33, 54, 66, 528
BspANI	GGCC	3 cut(s)	65, 339, 514
BspFNI	CGCG	1 cut(s)	528
BspLI	GGNNCC	1 cut(s)	515
BspMAI	CTGCAG	1 cut(s)	234
BspMI	ACCTGC	1 cut(s)	196
BspOI	GCTAGC	1 cut(s)	143
BsrGI	TGTACA	1 cut(s)	247
BsrI	ACTGG	3 cut(s)	150, 327, 605
BssECI	CCNNGG	2 cut(s)	271, 340
BssT1I	CCWWGG	1 cut(s)	271
Bst2UI	CCWGG	2 cut(s)	511, 548
Bst4CI	ACNGT	2 cut(s)	203, 470
Bst6I	CTCTTC	1 cut(s)	293
BstAUI	TGTACA	1 cut(s)	247
BstC8I	GCNNGC	4 cut(s)	141, 230, 530, 534
BstDSI	CCRYGG	1 cut(s)	271
BstF5I	GGATG	1 cut(s)	39
BstFNI	CGCG	1 cut(s)	528
BstH2I	RGCGCY	1 cut(s)	33
BstHHI	GCGC	1 cut(s)	32
BstMWI	GCNNNNNNNGC	2 cut(s)	62, 234
BstNI	CCWGG	2 cut(s)	511, 548
BstNSI	RCATGY	2 cut(s)	128, 254
BstSCI	CCNGG	2 cut(s)	509, 546
BstSFI	CTRYAG	1 cut(s)	230
BstUI	CGCG	1 cut(s)	528
BstV1I	GCAGC	2 cut(s)	22, 378
BsuRI	GGCC	3 cut(s)	65, 339, 514
BtgI	CCRYGG	1 cut(s)	271
BtsCI	GGATG	1 cut(s)	39
BtsI	GCAGTG	1 cut(s)	239
BtsIMutI	CAGTG	2 cut(s)	157, 239
BveI	ACCTGC	1 cut(s)	196
Cac8I	GCNNGC	4 cut(s)	141, 230, 530, 534
CfoI	GCGC	1 cut(s)	32
Cfr13I	GGNCC	2 cut(s)	94, 513
Csp6I	GTAC	3 cut(s)	128, 248, 371
CviAII	CATG	3 cut(s)	125, 251, 272
CviJI	RGCY	8 cut(s)	65, 139, 143, 334, 339, 391, 514, 536
CviKI_1	RGCY	8 cut(s)	65, 139, 143, 334, 339, 391, 514, 536
CviQI	GTAC	3 cut(s)	128, 248, 371
DraIII	CACNNNGTG	1 cut(s)	152
DrdI	GACNNNNNNGTC	1 cut(s)	92
DseDI	GACNNNNNNGTC	1 cut(s)	92
EaeI	YGGCCR	1 cut(s)	337
Eam1104I	CTCTTC	1 cut(s)	293
EarI	CTCTTC	1 cut(s)	293
Eco130I	CCWWGG	1 cut(s)	271
Eco47I	GGWCC	1 cut(s)	94
Eco57I	CTGAAG	1 cut(s)	274
EcoO109I	RGGNCCY	1 cut(s)	513
EcoRII	CCWGG	2 cut(s)	509, 546
EcoT14I	CCWWGG	1 cut(s)	271
ErhI	CCWWGG	1 cut(s)	271
FaeI	CATG	3 cut(s)	128, 254, 275
FaiI	YATR	5 cut(s)	126, 242, 252, 273, 423
FalI	AAGNNNNNCTT	2 cut(s)	318, 350
FaqI	GGGAC	1 cut(s)	392
FatI	CATG	3 cut(s)	124, 250, 271
FauI	CCCGC	1 cut(s)	521
Fnu4HI	GCNGC	5 cut(s)	33, 36, 54, 66, 392
FokI	GGATG	1 cut(s)	26
Fsp4HI	GCNGC	5 cut(s)	33, 36, 54, 66, 392
FspBI	CTAG	2 cut(s)	140, 452
GlaI	GCGC	1 cut(s)	31
GluI	GCNGC	5 cut(s)	33, 36, 54, 66, 392
HaeII	RGCGCY	1 cut(s)	33
HaeIII	GGCC	3 cut(s)	65, 339, 514
HhaI	GCGC	1 cut(s)	32
Hin1II	CATG	3 cut(s)	128, 254, 275
Hin6I	GCGC	1 cut(s)	30
HinP1I	GCGC	1 cut(s)	30
HindIII	AAGCTT	1 cut(s)	534
HinfI	GANTC	1 cut(s)	587
HphI	GGTGA	2 cut(s)	428, 482
Hpy166II	GTNNAC	1 cut(s)	419
Hpy8I	GTNNAC	1 cut(s)	419
Hpy99I	CGWCG	1 cut(s)	62
HpyAV	CCTTC	3 cut(s)	85, 361, 369
HpyCH4III	ACNGT	2 cut(s)	203, 470
HpyCH4V	TGCA	3 cut(s)	185, 232, 446
HpyF10VI	GCNNNNNNNGC	2 cut(s)	62, 234
Hsp92II	CATG	3 cut(s)	128, 254, 275
HspAI	GCGC	1 cut(s)	30
Lsp1109I	GCAGC	2 cut(s)	22, 378
MaeI	CTAG	2 cut(s)	140, 452
MaeIII	GTNAC	2 cut(s)	83, 470
MboII	GAAGA	1 cut(s)	280
MfeI	CAATTG	1 cut(s)	441
MluCI	AATT	1 cut(s)	441
MnlI	CCTC	7 cut(s)	55, 199, 270, 296, 298, 335, 406
MseI	TTAA	1 cut(s)	504
MslI	CAYNNNNRTG	1 cut(s)	255
MspA1I	CMGCKG	2 cut(s)	35, 391
MspR9I	CCNGG	2 cut(s)	511, 548
MunI	CAATTG	1 cut(s)	441
MvaI	CCWGG	2 cut(s)	511, 548
MvnI	CGCG	1 cut(s)	528
MwoI	GCNNNNNNNGC	2 cut(s)	62, 234
NcoI	CCATGG	1 cut(s)	271
NheI	GCTAGC	1 cut(s)	139
NlaIII	CATG	3 cut(s)	128, 254, 275
NlaIV	GGNNCC	1 cut(s)	515
NmeAIII	GCCGAG	1 cut(s)	365
NmuCI	GTSAC	2 cut(s)	83, 470
NspI	RCATGY	2 cut(s)	128, 254
PaqCI	CACCTGC	1 cut(s)	196
PciI	ACATGT	2 cut(s)	124, 250
PcsI	WCGNNNNNNNCGW	1 cut(s)	337
PfeI	GAWTC	1 cut(s)	587
PkrI	GCNGC	5 cut(s)	34, 37, 55, 67, 393
PscI	ACATGT	2 cut(s)	124, 250
Psp6I	CCWGG	2 cut(s)	509, 546
PspGI	CCWGG	2 cut(s)	509, 546
PspN4I	GGNNCC	1 cut(s)	515
PspPI	GGNCC	2 cut(s)	94, 513
PsrI	GAACNNNNNNTAC	1 cut(s)	585
PstI	CTGCAG	1 cut(s)	234
PvuII	CAGCTG	1 cut(s)	391
RsaI	GTAC	3 cut(s)	129, 249, 372
RsaNI	GTAC	3 cut(s)	128, 248, 371
RseI	CAYNNNNRTG	1 cut(s)	255
SaqAI	TTAA	1 cut(s)	504
SatI	GCNGC	5 cut(s)	33, 36, 54, 66, 392
Sau96I	GGNCC	2 cut(s)	94, 513
ScrFI	CCNGG	2 cut(s)	511, 548
SetI	ASST	8 cut(s)	96, 190, 210, 281, 309, 372, 393, 538
SfcI	CTRYAG	1 cut(s)	230
SinI	GGWCC	1 cut(s)	94
SmiMI	CAYNNNNRTG	1 cut(s)	255
Sse9I	AATT	1 cut(s)	441
SsiI	CCGC	4 cut(s)	33, 54, 66, 528
SspI	AATATT	1 cut(s)	463
SspMI	CTAG	2 cut(s)	140, 452
StyD4I	CCNGG	2 cut(s)	509, 546
StyI	CCWWGG	1 cut(s)	271
TaaI	ACNGT	2 cut(s)	203, 470
TasI	AATT	1 cut(s)	441
TatI	WGTACW	1 cut(s)	247
TauI	GCSGC	3 cut(s)	35, 56, 68
TfiI	GAWTC	1 cut(s)	587
Tru1I	TTAA	1 cut(s)	504
Tru9I	TTAA	1 cut(s)	504
TscAI	CASTG	2 cut(s)	157, 239
TseFI	GTSAC	2 cut(s)	83, 470
TseI	GCWGC	2 cut(s)	35, 391
Tsp45I	GTSAC	2 cut(s)	83, 470
TspRI	CASTG	2 cut(s)	157, 239
VpaK11BI	GGWCC	1 cut(s)	94
XceI	RCATGY	2 cut(s)	128, 254
XspI	CTAG	2 cut(s)	140, 452

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.