AT4G38960

zinc finger

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0004172
Physical Location & Seq
Forward (+)
18160903 .. 18163341
2439 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G38960.4

Sequence Viewer

Length: 552 bp
ATGCGGATTTTGTGCGATGCTTGCGAGAACGCAGCCGCAATCATCTTTTGCGCCGCCGATGAAGCTGCCCTTTGTCGCCCCTGCGATGAAAAAGTTCATATGTGCAACAAGCTAGCTAGTCGGCATGTACGTGTTGGTTTAGCTGAACCAAGCAATGCCCCATGCTGTGATATATGCGAAAATGCACCTGCCTTCTTTTACTGTGAGATAGACGGTAGTTCTCTTTGTCTGCAATGTGACATGGTAGTACATGTTGGTGGCAAGAGAACACACGGTCGGTTTCTTTTGCTGAGACAGAGAATCGAGTTTCCAGGGGATAAGCCTAAAGAAAACAATACGAGGGACAATTTGCAGAACCAAAGAGTCTCTACAAATGGAAATGGTGAAGCCAATGGGAAGATTGATGACGAAATGATTGATCTAAATGCTAATCCACAAAGAGTACATGAGCCATCATCAAATAACAACGGGATTGATGTAAATAACGAGAACAATCACGAGCCTGCAGGCCTTGTACCAGTTGGACCCTTTAAACGAGAGTCTGAGAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-B_box

Protein Analysis

183

Amino Acids

20.15

Weight (kDa)

5.36

Isoelectric Point (pI)

42.63

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 196
Acc36I ACCTGC 1 cut(s) 196
AciI CCGC 3 cut(s) 4, 36, 54
AfaI GTAC 4 cut(s) 129, 249, 444, 516
AflIII ACRYGT 2 cut(s) 130, 250
AjnI CCWGG 1 cut(s) 310
AluBI AGCT 4 cut(s) 65, 112, 116, 143
AluI AGCT 4 cut(s) 65, 112, 116, 143
Alw26I GTCTC 2 cut(s) 286, 370
AoxI GGCC 1 cut(s) 508
ApeKI GCWGC 2 cut(s) 32, 65
Asp700I GAANNNNTTC 1 cut(s) 93
AspLEI GCGC 1 cut(s) 53
AspS9I GGNCC 1 cut(s) 524
AsuHPI GGTGA 1 cut(s) 395
AsuNHI GCTAGC 1 cut(s) 112
AvaII GGWCC 1 cut(s) 524
BauI CACGAG 1 cut(s) 497
BbvI GCAGC 2 cut(s) 44, 52
BccI CCATC 1 cut(s) 460
BcgI CGANNNNNNTGC 2 cut(s) 47, 81
BciT130I CCWGG 1 cut(s) 312
BcoDI GTCTC 2 cut(s) 286, 370
BfaI CTAG 2 cut(s) 113, 117
BfmI CTRYAG 1 cut(s) 504
BfuAI ACCTGC 1 cut(s) 196
BisI GCNGC 4 cut(s) 33, 36, 54, 66
BlsI GCNGC 4 cut(s) 34, 37, 55, 67
Bme1390I CCNGG 1 cut(s) 312
Bme18I GGWCC 1 cut(s) 524
BmgT120I GGNCC 1 cut(s) 524
BmiI GGNNCC 1 cut(s) 526
BmrFI CCNGG 1 cut(s) 312
BmsI GCATC 1 cut(s) 7
BmtI GCTAGC 1 cut(s) 116
BsaAI YACGTR 1 cut(s) 131
BsaJI CCNNGG 1 cut(s) 311
Bse1I ACTGG 1 cut(s) 518
Bse3DI GCAATG 2 cut(s) 160, 239
BseBI CCWGG 1 cut(s) 312
BseDI CCNNGG 1 cut(s) 311
BseMI GCAATG 2 cut(s) 160, 239
BseMII CTCAG 2 cut(s) 281, 534
BseNI ACTGG 1 cut(s) 518
BseXI GCAGC 2 cut(s) 44, 52
Bsh1285I CGRYCG 1 cut(s) 277
BshFI GGCC 1 cut(s) 510
BsiEI CGRYCG 1 cut(s) 277
BslFI GGGAC 1 cut(s) 356
BsmAI GTCTC 2 cut(s) 286, 370
BsmFI GGGAC 1 cut(s) 356
BsnI GGCC 1 cut(s) 510
Bsp143I GATC 1 cut(s) 418
BspACI CCGC 3 cut(s) 4, 36, 54
BspANI GGCC 1 cut(s) 510
BspCNI CTCAG 2 cut(s) 282, 535
BspLI GGNNCC 1 cut(s) 526
BspMAI CTGCAG 1 cut(s) 508
BspMI ACCTGC 1 cut(s) 196
BspOI GCTAGC 1 cut(s) 116
BsrDI GCAATG 2 cut(s) 160, 239
BsrI ACTGG 1 cut(s) 518
BssECI CCNNGG 1 cut(s) 311
BssMI GATC 1 cut(s) 418
BssSI CACGAG 1 cut(s) 497
Bst2BI CACGAG 1 cut(s) 497
Bst2UI CCWGG 1 cut(s) 312
Bst4CI ACNGT 3 cut(s) 203, 215, 275
BstBAI YACGTR 1 cut(s) 131
BstC8I GCNNGC 4 cut(s) 22, 114, 504, 508
BstDEI CTNAG 2 cut(s) 290, 543
BstHHI GCGC 1 cut(s) 53
BstKTI GATC 1 cut(s) 421
BstMAI GTCTC 2 cut(s) 286, 370
BstMBI GATC 1 cut(s) 418
BstMCI CGRYCG 1 cut(s) 277
BstMWI GCNNNNNNNGC 2 cut(s) 21, 62
BstNI CCWGG 1 cut(s) 312
BstNSI RCATGY 2 cut(s) 128, 254
BstSCI CCNGG 1 cut(s) 310
BstSFI CTRYAG 1 cut(s) 504
BstV1I GCAGC 2 cut(s) 44, 52
BsuRI GGCC 1 cut(s) 510
BtgZI GCGATG 2 cut(s) 30, 99
BveI ACCTGC 1 cut(s) 196
Cac8I GCNNGC 4 cut(s) 22, 114, 504, 508
CfoI GCGC 1 cut(s) 53
Cfr13I GGNCC 1 cut(s) 524
Csp6I GTAC 4 cut(s) 128, 248, 443, 515
CviAII CATG 5 cut(s) 125, 162, 241, 251, 446
CviQI GTAC 4 cut(s) 128, 248, 443, 515
DdeI CTNAG 2 cut(s) 290, 543
DpnI GATC 1 cut(s) 420
DpnII GATC 1 cut(s) 418
DraI TTTAAA 1 cut(s) 532
Eco147I AGGCCT 1 cut(s) 510
Eco47I GGWCC 1 cut(s) 524
EcoRII CCWGG 1 cut(s) 310
FaeI CATG 5 cut(s) 128, 165, 244, 254, 449
FaiI YATR 9 cut(s) 99, 101, 126, 163, 173, 175, 242, 252, 447
FalI AAGNNNNNCTT 2 cut(s) 54, 86
FaqI GGGAC 1 cut(s) 356
FatI CATG 5 cut(s) 124, 161, 240, 250, 445
FauNDI CATATG 1 cut(s) 99
Fnu4HI GCNGC 4 cut(s) 33, 36, 54, 66
Fsp4HI GCNGC 4 cut(s) 33, 36, 54, 66
FspBI CTAG 2 cut(s) 113, 117
GlaI GCGC 1 cut(s) 52
GluI GCNGC 4 cut(s) 33, 36, 54, 66
HaeIII GGCC 1 cut(s) 510
HhaI GCGC 1 cut(s) 53
Hin1II CATG 5 cut(s) 128, 165, 244, 254, 449
Hin6I GCGC 1 cut(s) 51
HinP1I GCGC 1 cut(s) 51
HinfI GANTC 3 cut(s) 300, 363, 539
HphI GGTGA 1 cut(s) 395
Hpy188I TCNGA 1 cut(s) 544
Hpy188III TCNNGA 1 cut(s) 497
HpyAV CCTTC 1 cut(s) 202
HpyCH4III ACNGT 3 cut(s) 203, 215, 275
HpyCH4IV ACGT 1 cut(s) 130
HpyCH4V TGCA 5 cut(s) 105, 185, 232, 352, 506
HpyF10VI GCNNNNNNNGC 2 cut(s) 21, 62
HpyF3I CTNAG 2 cut(s) 290, 543
HpySE526I ACGT 1 cut(s) 130
Hsp92II CATG 5 cut(s) 128, 165, 244, 254, 449
HspAI GCGC 1 cut(s) 51
Kzo9I GATC 1 cut(s) 418
LpnPI CCDG 7 cut(s) 94, 201, 297, 324, 492, 516, 531
Lsp1109I GCAGC 2 cut(s) 44, 52
LweI GCATC 1 cut(s) 7
MaeI CTAG 2 cut(s) 113, 117
MaeII ACGT 1 cut(s) 130
MaeIII GTNAC 1 cut(s) 236
MalI GATC 1 cut(s) 420
MboI GATC 1 cut(s) 418
MboII GAAGA 1 cut(s) 409
MluCI AATT 1 cut(s) 346
MlyI GAGTC 2 cut(s) 372, 548
MmeI TCCRAC 1 cut(s) 502
MnlI CCTC 1 cut(s) 333
MroXI GAANNNNTTC 1 cut(s) 93
MseI TTAA 1 cut(s) 531
MslI CAYNNNNRTG 2 cut(s) 129, 255
MspR9I CCNGG 1 cut(s) 312
MvaI CCWGG 1 cut(s) 312
MwoI GCNNNNNNNGC 2 cut(s) 21, 62
NdeI CATATG 1 cut(s) 99
NdeII GATC 1 cut(s) 418
NheI GCTAGC 1 cut(s) 112
NlaIII CATG 5 cut(s) 128, 165, 244, 254, 449
NlaIV GGNNCC 1 cut(s) 526
NmuCI GTSAC 1 cut(s) 236
NspI RCATGY 2 cut(s) 128, 254
PaqCI CACCTGC 1 cut(s) 196
PceI AGGCCT 1 cut(s) 510
PciI ACATGT 1 cut(s) 250
PcsI WCGNNNNNNNCGW 1 cut(s) 127
PdmI GAANNNNTTC 1 cut(s) 93
PfeI GAWTC 1 cut(s) 300
PkrI GCNGC 4 cut(s) 34, 37, 55, 67
PleI GAGTC 2 cut(s) 371, 547
PpsI GAGTC 2 cut(s) 371, 547
Ppu21I YACGTR 1 cut(s) 131
PscI ACATGT 1 cut(s) 250
Psp6I CCWGG 1 cut(s) 310
PspGI CCWGG 1 cut(s) 310
PspN4I GGNNCC 1 cut(s) 526
PspPI GGNCC 1 cut(s) 524
PstI CTGCAG 1 cut(s) 508
RsaI GTAC 4 cut(s) 129, 249, 444, 516
RsaNI GTAC 4 cut(s) 128, 248, 443, 515
RseI CAYNNNNRTG 2 cut(s) 129, 255
SaqAI TTAA 1 cut(s) 531
SatI GCNGC 4 cut(s) 33, 36, 54, 66
Sau3AI GATC 1 cut(s) 418
Sau96I GGNCC 1 cut(s) 524
SbfI CCTGCAGG 1 cut(s) 508
SchI GAGTC 2 cut(s) 372, 548
ScrFI CCNGG 1 cut(s) 312
SdaI CCTGCAGG 1 cut(s) 508
SetI ASST 6 cut(s) 67, 114, 118, 133, 145, 190
SfaNI GCATC 1 cut(s) 7
SfcI CTRYAG 1 cut(s) 504
SinI GGWCC 1 cut(s) 524
SmiMI CAYNNNNRTG 2 cut(s) 129, 255
Sse8387I CCTGCAGG 1 cut(s) 508
Sse9I AATT 1 cut(s) 346
SseBI AGGCCT 1 cut(s) 510
SsiI CCGC 3 cut(s) 4, 36, 54
SspMI CTAG 2 cut(s) 113, 117
StuI AGGCCT 1 cut(s) 510
StyD4I CCNGG 1 cut(s) 310
TaaI ACNGT 3 cut(s) 203, 215, 275
TaiI ACGT 1 cut(s) 133
TaqI TCGA 1 cut(s) 303
TasI AATT 1 cut(s) 346
TatI WGTACW 2 cut(s) 247, 442
TauI GCSGC 2 cut(s) 38, 56
TfiI GAWTC 1 cut(s) 300
Tru1I TTAA 1 cut(s) 531
Tru9I TTAA 1 cut(s) 531
TseFI GTSAC 1 cut(s) 236
TseI GCWGC 2 cut(s) 32, 65
Tsp45I GTSAC 1 cut(s) 236
TspDTI ATGAA 3 cut(s) 75, 86, 102
VpaK11BI GGWCC 1 cut(s) 524
XceI RCATGY 2 cut(s) 128, 254
XmnI GAANNNNTTC 1 cut(s) 93
XspI CTAG 2 cut(s) 113, 117
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.