Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0004172

Physical Location & Seq

Genomic Coordinates Reverse (-)

80857137 .. 80860224

Gene Structure 3088 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00142780.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 408 bp

ATGCGAACACTTTGTGACGCTTGTGAAAGCGCAGCCGCGATCGTTTTCTGTGCTGCCGACGAAGCTGCTCTTTGCCGTGCCTGTGATGAAAAAGTGCATTTGTGCAATAAGCTTGCTAGCCGACATGTCCGGGTTGGTCTGGCAACTCCCAGTGCAGTTCCCCGCTGTGATATATGTGAAAATGCACCCGCTTTCTTCTATTGCGAGATAGATGGGAGTTCCCTTTGTTTGCAATGTGATATGGTTGTTCATGTTGGAGGTAAAAGAACACACGGAAGATATCTGGTACTGAGACAAAGAGTTGAGTTTCCAGGGGATAAACCTAGTAGTAACGGTGAAGACCCAGCATCCCAACCCCCATTGACCAAGGTGAGACCAGAAGAGTACAACATCAGCAACCTAGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-B_box

Protein Analysis

135

Amino Acids

14.73

Weight (kDa)

5.8

Isoelectric Point (pI)

58.08

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-B_box	PF00643	3 - 42	9.9e-06	B-box zinc finger
zf-B_box	PF00643	53 - 85	4.8e-06	B-box zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0004172)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G21320 AT4G38960 AT4G38960 AT4G38960 AT4G38960 AT4G38960 AT4G38960
fragaria_vesca	FvH4_1g12110 FvH4_1g12110 FvH4_1g12110
malus_domestica	MD00G1039900.v1.1 MD02G1110700.v1.1 MD10G1063500.v1.1 MD15G1248300.v1.1
prunus_persica	Prupe.7G165700_v2.0.a1 Prupe.8G085000_v2.0.a1
pyrus_communis	pycom02g10660 pycom05g04650 pycom10g04900 pycom15g21870
rosa_chinensis	RchiOBHm_Chr2g0099771
rosa_laevigata	RLG00000016912
rosa_multiflora	Rmu_sc0008864.1_g000010 Rmu_sc0036064.1_g000001
rosa_roxburghii	Rroxscaffold_2G00142780
rosa_rugosa	Rorug02G0082900 Rorug02G0083000 Rorug02G0083100
rosa_samantha	Rh2AG132600 Rh2BG135400 Rh2CG136700 Rh2DG137200
rosa_wichuraiana	Rw2G010260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	38
AciI	CCGC	3 cut(s)	36, 163, 189
AdeI	CACNNNGTG	1 cut(s)	14
AfaI	GTAC	2 cut(s)	288, 386
AflIII	ACRYGT	1 cut(s)	124
AjnI	CCWGG	1 cut(s)	310
AluBI	AGCT	2 cut(s)	65, 112
AluI	AGCT	2 cut(s)	65, 112
Alw26I	GTCTC	2 cut(s)	286, 367
ApeKI	GCWGC	3 cut(s)	32, 53, 65
AspLEI	GCGC	1 cut(s)	32
AsuC2I	CCSGG	1 cut(s)	131
AsuHPI	GGTGA	2 cut(s)	347, 382
AsuNHI	GCTAGC	1 cut(s)	116
BbsI	GAAGAC	1 cut(s)	345
BbvI	GCAGC	3 cut(s)	40, 44, 52
BccI	CCATC	1 cut(s)	206
BceAI	ACGGC	1 cut(s)	60
BcgI	CGANNNNNNTGC	2 cut(s)	47, 81
BciT130I	CCWGG	1 cut(s)	312
BcnI	CCSGG	1 cut(s)	131
BcoDI	GTCTC	2 cut(s)	286, 367
BfaI	CTAG	3 cut(s)	117, 324, 401
BisI	GCNGC	4 cut(s)	33, 36, 54, 66
BlsI	GCNGC	4 cut(s)	34, 37, 55, 67
Bme1390I	CCNGG	2 cut(s)	131, 312
BmrFI	CCNGG	2 cut(s)	131, 312
BmrI	ACTGGG	1 cut(s)	144
BmsI	GCATC	1 cut(s)	356
BmtI	GCTAGC	1 cut(s)	120
BmuI	ACTGGG	1 cut(s)	144
BpiI	GAAGAC	1 cut(s)	345
BpuMI	CCSGG	1 cut(s)	131
BsaI	GGTCTC	1 cut(s)	367
BsaJI	CCNNGG	2 cut(s)	311, 366
Bse1I	ACTGG	1 cut(s)	150
Bse3DI	GCAATG	1 cut(s)	239
BseBI	CCWGG	1 cut(s)	312
BseDI	CCNNGG	2 cut(s)	311, 366
BseGI	GGATG	1 cut(s)	347
BseMI	GCAATG	1 cut(s)	239
BseMII	CTCAG	1 cut(s)	281
BseNI	ACTGG	1 cut(s)	150
BseXI	GCAGC	3 cut(s)	40, 44, 52
BseYI	CCCAGC	1 cut(s)	343
BsgI	GTGCAG	1 cut(s)	174
Bsh1236I	CGCG	1 cut(s)	38
Bsh1285I	CGRYCG	1 cut(s)	42
BsiEI	CGRYCG	1 cut(s)	42
BsiSI	CCGG	1 cut(s)	130
BsmAI	GTCTC	2 cut(s)	286, 367
Bso31I	GGTCTC	1 cut(s)	367
Bsp143I	GATC	1 cut(s)	39
BspACI	CCGC	3 cut(s)	36, 163, 189
BspCNI	CTCAG	1 cut(s)	282
BspFNI	CGCG	1 cut(s)	38
BspOI	GCTAGC	1 cut(s)	120
BspTNI	GGTCTC	1 cut(s)	367
BsrDI	GCAATG	1 cut(s)	239
BsrI	ACTGG	1 cut(s)	150
BssECI	CCNNGG	2 cut(s)	311, 366
BssMI	GATC	1 cut(s)	39
BssT1I	CCWWGG	1 cut(s)	366
Bst2UI	CCWGG	1 cut(s)	312
Bst4CI	ACNGT	1 cut(s)	335
Bst6I	CTCTTC	1 cut(s)	375
BstC8I	GCNNGC	2 cut(s)	114, 118
BstDEI	CTNAG	1 cut(s)	290
BstF5I	GGATG	1 cut(s)	347
BstFNI	CGCG	1 cut(s)	38
BstHHI	GCGC	1 cut(s)	32
BstKTI	GATC	1 cut(s)	42
BstMAI	GTCTC	2 cut(s)	286, 367
BstMBI	GATC	1 cut(s)	39
BstMCI	CGRYCG	1 cut(s)	42
BstMWI	GCNNNNNNNGC	1 cut(s)	62
BstNI	CCWGG	1 cut(s)	312
BstNSI	RCATGY	1 cut(s)	128
BstSCI	CCNGG	2 cut(s)	129, 310
BstUI	CGCG	1 cut(s)	38
BstV1I	GCAGC	3 cut(s)	40, 44, 52
BstV2I	GAAGAC	1 cut(s)	345
BtsCI	GGATG	1 cut(s)	347
BtsIMutI	CAGTG	1 cut(s)	157
Cac8I	GCNNGC	2 cut(s)	114, 118
CfoI	GCGC	1 cut(s)	32
CseI	GACGC	1 cut(s)	26
Csp6I	GTAC	2 cut(s)	287, 385
CviAII	CATG	2 cut(s)	125, 251
CviJI	RGCY	4 cut(s)	35, 65, 112, 120
CviKI_1	RGCY	4 cut(s)	35, 65, 112, 120
CviQI	GTAC	2 cut(s)	287, 385
DdeI	CTNAG	1 cut(s)	290
DpnI	GATC	1 cut(s)	41
DpnII	GATC	1 cut(s)	39
DraIII	CACNNNGTG	1 cut(s)	14
Eam1104I	CTCTTC	1 cut(s)	375
EarI	CTCTTC	1 cut(s)	375
Eco130I	CCWWGG	1 cut(s)	366
Eco31I	GGTCTC	1 cut(s)	367
Eco32I	GATATC	1 cut(s)	281
EcoRII	CCWGG	1 cut(s)	310
EcoRV	GATATC	1 cut(s)	281
EcoT14I	CCWWGG	1 cut(s)	366
ErhI	CCWWGG	1 cut(s)	366
FaeI	CATG	2 cut(s)	128, 254
FaiI	YATR	5 cut(s)	126, 173, 175, 242, 252
FalI	AAGNNNNNCTT	2 cut(s)	54, 86
FatI	CATG	2 cut(s)	124, 250
FauI	CCCGC	2 cut(s)	170, 196
Fnu4HI	GCNGC	4 cut(s)	33, 36, 54, 66
FokI	GGATG	1 cut(s)	334
Fsp4HI	GCNGC	4 cut(s)	33, 36, 54, 66
FspBI	CTAG	3 cut(s)	117, 324, 401
GlaI	GCGC	1 cut(s)	31
GluI	GCNGC	4 cut(s)	33, 36, 54, 66
GsaI	CCCAGC	1 cut(s)	347
HapII	CCGG	1 cut(s)	130
HgaI	GACGC	1 cut(s)	26
HhaI	GCGC	1 cut(s)	32
Hin1II	CATG	2 cut(s)	128, 254
Hin6I	GCGC	1 cut(s)	30
HinP1I	GCGC	1 cut(s)	30
HindIII	AAGCTT	1 cut(s)	110
HpaII	CCGG	1 cut(s)	130
HphI	GGTGA	2 cut(s)	347, 382
Hpy99I	CGWCG	1 cut(s)	62
HpyCH4III	ACNGT	1 cut(s)	335
HpyCH4V	TGCA	5 cut(s)	97, 105, 155, 185, 232
HpyF10VI	GCNNNNNNNGC	1 cut(s)	62
HpyF3I	CTNAG	1 cut(s)	290
Hsp92II	CATG	2 cut(s)	128, 254
HspAI	GCGC	1 cut(s)	30
Kzo9I	GATC	1 cut(s)	39
LpnPI	CCDG	9 cut(s)	94, 125, 143, 163, 269, 297, 324, 357, 390
Lsp1109I	GCAGC	3 cut(s)	40, 44, 52
LweI	GCATC	1 cut(s)	356
MaeI	CTAG	3 cut(s)	117, 324, 401
MaeIII	GTNAC	2 cut(s)	14, 329
MalI	GATC	1 cut(s)	41
MboI	GATC	1 cut(s)	39
MboII	GAAGA	4 cut(s)	187, 288, 350, 392
MmeI	TCCRAC	1 cut(s)	235
MnlI	CCTC	1 cut(s)	251
MspA1I	CMGCKG	1 cut(s)	165
MspI	CCGG	1 cut(s)	130
MspR9I	CCNGG	2 cut(s)	131, 312
MvaI	CCWGG	1 cut(s)	312
MvnI	CGCG	1 cut(s)	38
MwoI	GCNNNNNNNGC	1 cut(s)	62
NciI	CCSGG	1 cut(s)	131
NdeII	GATC	1 cut(s)	39
NheI	GCTAGC	1 cut(s)	116
NlaIII	CATG	2 cut(s)	128, 254
NmuCI	GTSAC	1 cut(s)	14
NspI	RCATGY	1 cut(s)	128
PciI	ACATGT	1 cut(s)	124
PkrI	GCNGC	4 cut(s)	34, 37, 55, 67
Ple19I	CGATCG	1 cut(s)	42
PscI	ACATGT	1 cut(s)	124
Psp6I	CCWGG	1 cut(s)	310
PspFI	CCCAGC	1 cut(s)	343
PspGI	CCWGG	1 cut(s)	310
PvuI	CGATCG	1 cut(s)	42
RsaI	GTAC	2 cut(s)	288, 386
RsaNI	GTAC	2 cut(s)	287, 385
SatI	GCNGC	4 cut(s)	33, 36, 54, 66
Sau3AI	GATC	1 cut(s)	39
ScrFI	CCNGG	2 cut(s)	131, 312
SetI	ASST	6 cut(s)	67, 114, 262, 325, 372, 402
SfaNI	GCATC	1 cut(s)	356
SsiI	CCGC	3 cut(s)	36, 163, 189
SspMI	CTAG	3 cut(s)	117, 324, 401
StyD4I	CCNGG	2 cut(s)	129, 310
StyI	CCWWGG	1 cut(s)	366
TaaI	ACNGT	1 cut(s)	335
TatI	WGTACW	1 cut(s)	384
TauI	GCSGC	1 cut(s)	38
TscAI	CASTG	1 cut(s)	157
TseFI	GTSAC	1 cut(s)	14
TseI	GCWGC	3 cut(s)	32, 53, 65
Tsp45I	GTSAC	1 cut(s)	14
TspDTI	ATGAA	2 cut(s)	102, 239
TspGWI	ACGGA	1 cut(s)	288
TspRI	CASTG	1 cut(s)	157
XceI	RCATGY	1 cut(s)	128
XspI	CTAG	3 cut(s)	117, 324, 401

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.