MD00G1039900.v1.1

salt tolerance-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr00
OG0004172
Physical Location & Seq
Forward (+)
6821252 .. 6824214
2963 bp
Loading structure...
UTR
Exon/CDS
Intron
MD00G1039900.v1.1.491

Sequence Viewer

Length: 582 bp
ATGCGAACGCTTTGTGATGTGTGCGAGAGCGCCGCTGCCATCCTCTTCTGTGCCGCCGACGAGGCCGCCCTTTGCCGTTCCTGTGACGAAAAGGTCCATCTGTGTAATAGACTTGCCAATAGACATGTACGGGTTGGGCTAGCCACACCCAGTGACATTCCTTGCTGTGATATTTGCGAAAATGCACCTGCGTTCTTTTACTGTGAGGTAGATGGTAGTTCTCTTTGCCTGCAGTGTGATATGATTGTACATGTCGGTGGGAAAAGAACCCATGGGAGGTATCTCCTCTTCAGGCAGAGAGTTGAGTTTCCAGGGAATAAGCTTGGCCGTTCAGAGGAACTAGGACTTCAACCACTTGACCAAAAGAAGGTACGAAGGGACGAAAATCAGCTGCCCGATGTAAAACCAAAAGAGAATGAACATAATCACAATATCTCTCCAACTGCAGTCCTAGAAAACAATATTGACGGTGACTACAAGATAGACAATACATTGATTGATCTTAATACCAGGCCCCAAAGAATACGCAGGCAAGCTTCAAAACCAGGAACAAGGTGTGGGTGTTCTATATGGCTTGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-B_box

Protein Analysis

194

Amino Acids

21.71

Weight (kDa)

6.59

Isoelectric Point (pI)

51.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-B_box PF00643 3 - 42 8.7e-06 B-box zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 196
AasI GACNNNNNNGTC 1 cut(s) 92
Acc36I ACCTGC 1 cut(s) 196
AciI CCGC 3 cut(s) 33, 54, 66
AcoI YGGCCR 1 cut(s) 325
AcuI CTGAAG 1 cut(s) 274
AdeI CACNNNGTG 1 cut(s) 152
AfaI GTAC 3 cut(s) 129, 249, 372
AfiI CCNNNNNNNGG 3 cut(s) 276, 334, 367
AflIII ACRYGT 2 cut(s) 124, 250
AgsI TTSAA 3 cut(s) 350, 540, 578
AjnI CCWGG 3 cut(s) 310, 509, 544
AluBI AGCT 3 cut(s) 322, 391, 536
AluI AGCT 3 cut(s) 322, 391, 536
AoxI GGCC 3 cut(s) 63, 325, 512
ApeKI GCWGC 2 cut(s) 35, 391
AspLEI GCGC 1 cut(s) 32
AspS9I GGNCC 2 cut(s) 94, 513
AsuHPI GGTGA 1 cut(s) 482
AsuNHI GCTAGC 1 cut(s) 139
AvaII GGWCC 1 cut(s) 94
BarI GAAGNNNNNNTAC 2 cut(s) 272, 304
BbvI GCAGC 2 cut(s) 22, 378
BccI CCATC 3 cut(s) 47, 105, 206
BceAI ACGGC 2 cut(s) 60, 312
BciT130I CCWGG 3 cut(s) 312, 511, 546
BfaI CTAG 3 cut(s) 140, 341, 452
BfmI CTRYAG 2 cut(s) 230, 444
BfoI RGCGCY 1 cut(s) 33
BfuAI ACCTGC 1 cut(s) 196
BglI GCCNNNNNGGC 1 cut(s) 62
BisI GCNGC 5 cut(s) 33, 36, 54, 66, 392
BlsI GCNGC 5 cut(s) 34, 37, 55, 67, 393
Bme1390I CCNGG 3 cut(s) 312, 511, 546
Bme18I GGWCC 1 cut(s) 94
BmgT120I GGNCC 2 cut(s) 94, 513
BmiI GGNNCC 1 cut(s) 515
BmrFI CCNGG 3 cut(s) 312, 511, 546
BmrI ACTGGG 1 cut(s) 144
BmtI GCTAGC 1 cut(s) 143
BmuI ACTGGG 1 cut(s) 144
BsaJI CCNNGG 2 cut(s) 271, 311
Bsc4I CCNNNNNNNGG 3 cut(s) 276, 334, 367
Bse1I ACTGG 1 cut(s) 150
BseBI CCWGG 3 cut(s) 312, 511, 546
BseDI CCNNGG 2 cut(s) 271, 311
BseGI GGATG 1 cut(s) 39
BseLI CCNNNNNNNGG 3 cut(s) 276, 334, 367
BseNI ACTGG 1 cut(s) 150
BseRI GAGGAG 1 cut(s) 275
BseXI GCAGC 2 cut(s) 22, 378
BshFI GGCC 3 cut(s) 65, 327, 514
BslFI GGGAC 1 cut(s) 392
BslI CCNNNNNNNGG 3 cut(s) 276, 334, 367
BsmFI GGGAC 1 cut(s) 392
BsnI GGCC 3 cut(s) 65, 327, 514
Bsp1407I TGTACA 1 cut(s) 247
Bsp143I GATC 1 cut(s) 499
Bsp19I CCATGG 1 cut(s) 271
BspACI CCGC 3 cut(s) 33, 54, 66
BspANI GGCC 3 cut(s) 65, 327, 514
BspLI GGNNCC 1 cut(s) 515
BspMAI CTGCAG 2 cut(s) 234, 448
BspMI ACCTGC 1 cut(s) 196
BspOI GCTAGC 1 cut(s) 143
BsrGI TGTACA 1 cut(s) 247
BsrI ACTGG 1 cut(s) 150
BssECI CCNNGG 2 cut(s) 271, 311
BssMI GATC 1 cut(s) 499
BssT1I CCWWGG 1 cut(s) 271
Bst2UI CCWGG 3 cut(s) 312, 511, 546
Bst4CI ACNGT 2 cut(s) 203, 470
Bst6I CTCTTC 2 cut(s) 50, 293
BstAUI TGTACA 1 cut(s) 247
BstC8I GCNNGC 4 cut(s) 141, 230, 530, 534
BstDSI CCRYGG 1 cut(s) 271
BstF5I GGATG 1 cut(s) 39
BstH2I RGCGCY 1 cut(s) 33
BstHHI GCGC 1 cut(s) 32
BstKTI GATC 1 cut(s) 502
BstMBI GATC 1 cut(s) 499
BstMWI GCNNNNNNNGC 1 cut(s) 62
BstNI CCWGG 3 cut(s) 312, 511, 546
BstNSI RCATGY 2 cut(s) 128, 254
BstSCI CCNGG 3 cut(s) 310, 509, 544
BstSFI CTRYAG 2 cut(s) 230, 444
BstV1I GCAGC 2 cut(s) 22, 378
BsuRI GGCC 3 cut(s) 65, 327, 514
BtgI CCRYGG 1 cut(s) 271
BtsCI GGATG 1 cut(s) 39
BtsI GCAGTG 1 cut(s) 239
BtsIMutI CAGTG 2 cut(s) 157, 239
BveI ACCTGC 1 cut(s) 196
Cac8I GCNNGC 4 cut(s) 141, 230, 530, 534
CfoI GCGC 1 cut(s) 32
Cfr13I GGNCC 2 cut(s) 94, 513
Csp6I GTAC 3 cut(s) 128, 248, 371
CviAII CATG 3 cut(s) 125, 251, 272
CviJI RGCY 9 cut(s) 65, 139, 143, 322, 327, 391, 514, 536, 574
CviKI_1 RGCY 9 cut(s) 65, 139, 143, 322, 327, 391, 514, 536, 574
CviQI GTAC 3 cut(s) 128, 248, 371
DpnI GATC 1 cut(s) 501
DpnII GATC 1 cut(s) 499
DraIII CACNNNGTG 1 cut(s) 152
DrdI GACNNNNNNGTC 1 cut(s) 92
DseDI GACNNNNNNGTC 1 cut(s) 92
EaeI YGGCCR 1 cut(s) 325
Eam1104I CTCTTC 2 cut(s) 50, 293
EarI CTCTTC 2 cut(s) 50, 293
Eco130I CCWWGG 1 cut(s) 271
Eco47I GGWCC 1 cut(s) 94
Eco57I CTGAAG 1 cut(s) 274
EcoO109I RGGNCCY 1 cut(s) 513
EcoRII CCWGG 3 cut(s) 310, 509, 544
EcoT14I CCWWGG 1 cut(s) 271
ErhI CCWWGG 1 cut(s) 271
FaeI CATG 3 cut(s) 128, 254, 275
FaiI YATR 7 cut(s) 126, 242, 252, 273, 423, 569, 571
FaqI GGGAC 1 cut(s) 392
FatI CATG 3 cut(s) 124, 250, 271
Fnu4HI GCNGC 5 cut(s) 33, 36, 54, 66, 392
FokI GGATG 1 cut(s) 26
Fsp4HI GCNGC 5 cut(s) 33, 36, 54, 66, 392
FspBI CTAG 3 cut(s) 140, 341, 452
GlaI GCGC 1 cut(s) 31
GluI GCNGC 5 cut(s) 33, 36, 54, 66, 392
HaeII RGCGCY 1 cut(s) 33
HaeIII GGCC 3 cut(s) 65, 327, 514
HhaI GCGC 1 cut(s) 32
Hin1II CATG 3 cut(s) 128, 254, 275
Hin6I GCGC 1 cut(s) 30
HinP1I GCGC 1 cut(s) 30
HindIII AAGCTT 2 cut(s) 320, 534
HphI GGTGA 1 cut(s) 482
Hpy188I TCNGA 1 cut(s) 334
Hpy99I CGWCG 1 cut(s) 62
HpyAV CCTTC 2 cut(s) 361, 369
HpyCH4III ACNGT 2 cut(s) 203, 470
HpyCH4V TGCA 3 cut(s) 185, 232, 446
HpyF10VI GCNNNNNNNGC 1 cut(s) 62
Hsp92II CATG 3 cut(s) 128, 254, 275
HspAI GCGC 1 cut(s) 30
Kzo9I GATC 1 cut(s) 499
Lsp1109I GCAGC 2 cut(s) 22, 378
MaeI CTAG 3 cut(s) 140, 341, 452
MaeIII GTNAC 3 cut(s) 83, 152, 470
MalI GATC 1 cut(s) 501
MboI GATC 1 cut(s) 499
MboII GAAGA 2 cut(s) 37, 280
MmeI TCCRAC 1 cut(s) 464
MnlI CCTC 6 cut(s) 53, 55, 199, 270, 296, 328
MseI TTAA 1 cut(s) 504
MslI CAYNNNNRTG 1 cut(s) 255
MspA1I CMGCKG 2 cut(s) 35, 391
MspR9I CCNGG 3 cut(s) 312, 511, 546
MvaI CCWGG 3 cut(s) 312, 511, 546
MwoI GCNNNNNNNGC 1 cut(s) 62
NcoI CCATGG 1 cut(s) 271
NdeII GATC 1 cut(s) 499
NheI GCTAGC 1 cut(s) 139
NlaIII CATG 3 cut(s) 128, 254, 275
NlaIV GGNNCC 1 cut(s) 515
NmuCI GTSAC 3 cut(s) 83, 152, 470
NspI RCATGY 2 cut(s) 128, 254
PaqCI CACCTGC 1 cut(s) 196
PciI ACATGT 2 cut(s) 124, 250
PkrI GCNGC 5 cut(s) 34, 37, 55, 67, 393
PscI ACATGT 2 cut(s) 124, 250
Psp6I CCWGG 3 cut(s) 310, 509, 544
PspGI CCWGG 3 cut(s) 310, 509, 544
PspN4I GGNNCC 1 cut(s) 515
PspPI GGNCC 2 cut(s) 94, 513
PstI CTGCAG 2 cut(s) 234, 448
PvuII CAGCTG 1 cut(s) 391
RsaI GTAC 3 cut(s) 129, 249, 372
RsaNI GTAC 3 cut(s) 128, 248, 371
RseI CAYNNNNRTG 1 cut(s) 255
SaqAI TTAA 1 cut(s) 504
SatI GCNGC 5 cut(s) 33, 36, 54, 66, 392
Sau3AI GATC 1 cut(s) 499
Sau96I GGNCC 2 cut(s) 94, 513
ScrFI CCNGG 3 cut(s) 312, 511, 546
SetI ASST 9 cut(s) 96, 190, 210, 281, 324, 372, 393, 538, 557
SfcI CTRYAG 2 cut(s) 230, 444
SinI GGWCC 1 cut(s) 94
SmiMI CAYNNNNRTG 1 cut(s) 255
SsiI CCGC 3 cut(s) 33, 54, 66
SspI AATATT 1 cut(s) 463
SspMI CTAG 3 cut(s) 140, 341, 452
StyD4I CCNGG 3 cut(s) 310, 509, 544
StyI CCWWGG 1 cut(s) 271
TaaI ACNGT 2 cut(s) 203, 470
TatI WGTACW 1 cut(s) 247
TauI GCSGC 3 cut(s) 35, 56, 68
Tru1I TTAA 1 cut(s) 504
Tru9I TTAA 1 cut(s) 504
TscAI CASTG 2 cut(s) 157, 239
TseFI GTSAC 3 cut(s) 83, 152, 470
TseI GCWGC 2 cut(s) 35, 391
Tsp45I GTSAC 3 cut(s) 83, 152, 470
TspDTI ATGAA 1 cut(s) 432
TspRI CASTG 2 cut(s) 157, 239
VpaK11BI GGWCC 1 cut(s) 94
XceI RCATGY 2 cut(s) 128, 254
XspI CTAG 3 cut(s) 140, 341, 452
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.