Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0004172

Physical Location & Seq

Genomic Coordinates Forward (+)

11808191 .. 11809816

Gene Structure 1626 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G085000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 627 bp

ATGCGAACGCTTTGCGACGTGTGCGAGGGCGCTGCTGCCATCGTTTTCTGCGCAGCTGACGAGGCCGCTCTTTGCCGTTCCTGCGACGAAAAGGTCCATATGTGTAATAAACTTGCCAGTAGACATATACGGGTTGGGCTAGCTAGCCCCAGTGACGTTCCTTGCTGTGATATTTGCGAAAATGCTCCTGCCTTCTTTTACTGTGAAGTAGATGGTAGTTCCCTTTGCCTGCAATGCGATATGATTGTACATGTTGGTGGTAAAAGAACCCATAGGAGGTATCTCCTTTTCAGGCAGAGAGTTGAGTTTCCAGGGGATAAGCCTGGCCGTTCAGAGGAACTAGGGCTTCAACCACTTGACCAAAAGGAAGTAAGAAAAGACCATATTCAGCCACCTAGTTTAAGTATAAGAGAGAATCAACAGAATTGCAGTGCCTCTCCAGTTGCAGTCCTAGACAACAATATTGTTGGTGACTACAAGATGGACAATAGATTGATTGATCTTAATACCAGGCCCCAAAGAATGAACGGGCAAGCTTCAACTAGCCCGGAACAGGGTTTGGATGTTCAAAATGGTGTGAATGACGAATCTGCAAGTGTTGTTCCTGTTGGGTCCGTCAAAAGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-B_box

Protein Analysis

209

Amino Acids

22.88

Weight (kDa)

5.75

Isoelectric Point (pI)

59.38

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004172)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G21320 AT4G38960 AT4G38960 AT4G38960 AT4G38960 AT4G38960 AT4G38960
fragaria_vesca	FvH4_1g12110 FvH4_1g12110 FvH4_1g12110
malus_domestica	MD00G1039900.v1.1 MD02G1110700.v1.1 MD10G1063500.v1.1 MD15G1248300.v1.1
prunus_persica	Prupe.7G165700_v2.0.a1 Prupe.8G085000_v2.0.a1
pyrus_communis	pycom02g10660 pycom05g04650 pycom10g04900 pycom15g21870
rosa_chinensis	RchiOBHm_Chr2g0099771
rosa_laevigata	RLG00000016912
rosa_multiflora	Rmu_sc0008864.1_g000010 Rmu_sc0036064.1_g000001
rosa_roxburghii	Rroxscaffold_2G00142780
rosa_rugosa	Rorug02G0082900 Rorug02G0083000 Rorug02G0083100
rosa_samantha	Rh2AG132600 Rh2BG135400 Rh2CG136700 Rh2DG137200
rosa_wichuraiana	Rw2G010260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	92
Acc16I	TGCGCA	1 cut(s)	52
AccBSI	CCGCTC	1 cut(s)	68
AccI	GTMKAC	1 cut(s)	121
AciI	CCGC	1 cut(s)	66
AcoI	YGGCCR	1 cut(s)	325
AfaI	GTAC	1 cut(s)	249
AfiI	CCNNNNNNNGG	4 cut(s)	276, 334, 553, 554
AflIII	ACRYGT	2 cut(s)	18, 250
AgsI	TTSAA	3 cut(s)	350, 540, 569
AjiI	CACGTC	1 cut(s)	19
AjnI	CCWGG	3 cut(s)	310, 322, 509
AluBI	AGCT	3 cut(s)	56, 143, 536
AluI	AGCT	3 cut(s)	56, 143, 536
AoxI	GGCC	3 cut(s)	63, 325, 512
ApeKI	GCWGC	3 cut(s)	32, 35, 53
AspLEI	GCGC	2 cut(s)	32, 53
AspS9I	GGNCC	3 cut(s)	94, 513, 612
AsuC2I	CCSGG	1 cut(s)	548
AsuHPI	GGTGA	1 cut(s)	482
AsuNHI	GCTAGC	2 cut(s)	139, 143
AvaII	GGWCC	2 cut(s)	94, 612
BbvI	GCAGC	3 cut(s)	19, 22, 65
BccI	CCATC	3 cut(s)	47, 206, 475
BceAI	ACGGC	2 cut(s)	60, 312
BcgI	CGANNNNNNTGC	3 cut(s)	14, 28, 48
BciT130I	CCWGG	3 cut(s)	312, 324, 511
BcnI	CCSGG	1 cut(s)	548
BfaI	CTAG	6 cut(s)	140, 144, 341, 396, 452, 543
BfoI	RGCGCY	1 cut(s)	33
BisI	GCNGC	4 cut(s)	33, 36, 54, 66
BlsI	GCNGC	4 cut(s)	34, 37, 55, 67
Bme1390I	CCNGG	4 cut(s)	312, 324, 511, 548
Bme18I	GGWCC	2 cut(s)	94, 612
BmgBI	CACGTC	1 cut(s)	19
BmgT120I	GGNCC	3 cut(s)	94, 513, 612
BmiI	GGNNCC	2 cut(s)	515, 613
BmrFI	CCNGG	4 cut(s)	312, 324, 511, 548
BmrI	ACTGGG	1 cut(s)	144
BmtI	GCTAGC	2 cut(s)	143, 147
BmuI	ACTGGG	1 cut(s)	144
BpmI	CTGGAG	1 cut(s)	423
BpuMI	CCSGG	1 cut(s)	548
BsaJI	CCNNGG	1 cut(s)	311
Bsc4I	CCNNNNNNNGG	4 cut(s)	276, 334, 553, 554
Bse1I	ACTGG	3 cut(s)	117, 150, 440
Bse3DI	GCAATG	1 cut(s)	239
BseBI	CCWGG	3 cut(s)	312, 324, 511
BseDI	CCNNGG	1 cut(s)	311
BseGI	GGATG	1 cut(s)	568
BseLI	CCNNNNNNNGG	4 cut(s)	276, 334, 553, 554
BseMI	GCAATG	1 cut(s)	239
BseNI	ACTGG	3 cut(s)	117, 150, 440
BseXI	GCAGC	3 cut(s)	19, 22, 65
BshFI	GGCC	3 cut(s)	65, 327, 514
BsiSI	CCGG	1 cut(s)	548
BslI	CCNNNNNNNGG	4 cut(s)	276, 334, 553, 554
BsnI	GGCC	3 cut(s)	65, 327, 514
Bsp1407I	TGTACA	1 cut(s)	247
Bsp143I	GATC	1 cut(s)	499
BspACI	CCGC	1 cut(s)	66
BspANI	GGCC	3 cut(s)	65, 327, 514
BspLI	GGNNCC	2 cut(s)	515, 613
BspOI	GCTAGC	2 cut(s)	143, 147
BsrBI	CCGCTC	1 cut(s)	68
BsrDI	GCAATG	1 cut(s)	239
BsrGI	TGTACA	1 cut(s)	247
BsrI	ACTGG	3 cut(s)	117, 150, 440
BssECI	CCNNGG	1 cut(s)	311
BssMI	GATC	1 cut(s)	499
Bst2UI	CCWGG	3 cut(s)	312, 324, 511
Bst4CI	ACNGT	1 cut(s)	203
BstAUI	TGTACA	1 cut(s)	247
BstC8I	GCNNGC	4 cut(s)	141, 145, 230, 534
BstF5I	GGATG	1 cut(s)	568
BstH2I	RGCGCY	1 cut(s)	33
BstHHI	GCGC	2 cut(s)	32, 53
BstKTI	GATC	1 cut(s)	502
BstMBI	GATC	1 cut(s)	499
BstMWI	GCNNNNNNNGC	4 cut(s)	21, 62, 81, 234
BstNI	CCWGG	3 cut(s)	312, 324, 511
BstNSI	RCATGY	1 cut(s)	254
BstSCI	CCNGG	4 cut(s)	310, 322, 509, 546
BstV1I	GCAGC	3 cut(s)	19, 22, 65
BsuRI	GGCC	3 cut(s)	65, 327, 514
BtrI	CACGTC	1 cut(s)	19
BtsCI	GGATG	1 cut(s)	568
BtsI	GCAGTG	1 cut(s)	436
BtsIMutI	CAGTG	2 cut(s)	157, 436
Cac8I	GCNNGC	4 cut(s)	141, 145, 230, 534
CfoI	GCGC	2 cut(s)	32, 53
Cfr13I	GGNCC	3 cut(s)	94, 513, 612
Csp6I	GTAC	1 cut(s)	248
CviAII	CATG	1 cut(s)	251
CviQI	GTAC	1 cut(s)	248
DpnI	GATC	1 cut(s)	501
DpnII	GATC	1 cut(s)	499
DrdI	GACNNNNNNGTC	1 cut(s)	92
DseDI	GACNNNNNNGTC	1 cut(s)	92
EaeI	YGGCCR	1 cut(s)	325
Eco47I	GGWCC	2 cut(s)	94, 612
EcoO109I	RGGNCCY	1 cut(s)	513
EcoRII	CCWGG	3 cut(s)	310, 322, 509
FaeI	CATG	1 cut(s)	254
FaiI	YATR	9 cut(s)	99, 101, 126, 128, 242, 252, 273, 384, 407
FatI	CATG	1 cut(s)	250
FauNDI	CATATG	1 cut(s)	99
FblI	GTMKAC	1 cut(s)	121
Fnu4HI	GCNGC	4 cut(s)	33, 36, 54, 66
FokI	GGATG	1 cut(s)	575
Fsp4HI	GCNGC	4 cut(s)	33, 36, 54, 66
FspBI	CTAG	6 cut(s)	140, 144, 341, 396, 452, 543
FspI	TGCGCA	1 cut(s)	52
GlaI	GCGC	2 cut(s)	31, 52
GluI	GCNGC	4 cut(s)	33, 36, 54, 66
GsuI	CTGGAG	1 cut(s)	423
HaeII	RGCGCY	1 cut(s)	33
HaeIII	GGCC	3 cut(s)	65, 327, 514
HapII	CCGG	1 cut(s)	548
HhaI	GCGC	2 cut(s)	32, 53
Hin1II	CATG	1 cut(s)	254
Hin6I	GCGC	2 cut(s)	30, 51
HinP1I	GCGC	2 cut(s)	30, 51
HindIII	AAGCTT	1 cut(s)	534
HinfI	GANTC	2 cut(s)	415, 587
HpaII	CCGG	1 cut(s)	548
HphI	GGTGA	1 cut(s)	482
Hpy166II	GTNNAC	1 cut(s)	122
Hpy188I	TCNGA	1 cut(s)	334
Hpy8I	GTNNAC	1 cut(s)	122
Hpy99I	CGWCG	2 cut(s)	20, 89
HpyAV	CCTTC	1 cut(s)	202
HpyCH4III	ACNGT	1 cut(s)	203
HpyCH4IV	ACGT	2 cut(s)	18, 156
HpyCH4V	TGCA	4 cut(s)	232, 429, 446, 593
HpyF10VI	GCNNNNNNNGC	4 cut(s)	21, 62, 81, 234
HpySE526I	ACGT	2 cut(s)	18, 156
Hsp92II	CATG	1 cut(s)	254
HspAI	GCGC	2 cut(s)	30, 51
Kzo9I	GATC	1 cut(s)	499
LmnI	GCTCC	1 cut(s)	190
Lsp1109I	GCAGC	3 cut(s)	19, 22, 65
MaeI	CTAG	6 cut(s)	140, 144, 341, 396, 452, 543
MaeII	ACGT	2 cut(s)	18, 156
MaeIII	GTNAC	2 cut(s)	152, 470
MalI	GATC	1 cut(s)	501
MbiI	CCGCTC	1 cut(s)	68
MboI	GATC	1 cut(s)	499
MluCI	AATT	1 cut(s)	424
MnlI	CCTC	5 cut(s)	19, 55, 270, 328, 445
MseI	TTAA	2 cut(s)	401, 504
MslI	CAYNNNNRTG	1 cut(s)	255
MspA1I	CMGCKG	1 cut(s)	56
MspI	CCGG	1 cut(s)	548
MspR9I	CCNGG	4 cut(s)	312, 324, 511, 548
MvaI	CCWGG	3 cut(s)	312, 324, 511
MwoI	GCNNNNNNNGC	4 cut(s)	21, 62, 81, 234
NciI	CCSGG	1 cut(s)	548
NdeI	CATATG	1 cut(s)	99
NdeII	GATC	1 cut(s)	499
NheI	GCTAGC	2 cut(s)	139, 143
NlaIII	CATG	1 cut(s)	254
NlaIV	GGNNCC	2 cut(s)	515, 613
NmuCI	GTSAC	2 cut(s)	152, 470
NsbI	TGCGCA	1 cut(s)	52
NspI	RCATGY	1 cut(s)	254
PciI	ACATGT	1 cut(s)	250
PfeI	GAWTC	2 cut(s)	415, 587
PkrI	GCNGC	4 cut(s)	34, 37, 55, 67
PscI	ACATGT	1 cut(s)	250
Psp6I	CCWGG	3 cut(s)	310, 322, 509
PspGI	CCWGG	3 cut(s)	310, 322, 509
PspN4I	GGNNCC	2 cut(s)	515, 613
PspPI	GGNCC	3 cut(s)	94, 513, 612
PvuII	CAGCTG	1 cut(s)	56
RsaI	GTAC	1 cut(s)	249
RsaNI	GTAC	1 cut(s)	248
RseI	CAYNNNNRTG	1 cut(s)	255
SaqAI	TTAA	2 cut(s)	401, 504
SatI	GCNGC	4 cut(s)	33, 36, 54, 66
Sau3AI	GATC	1 cut(s)	499
Sau96I	GGNCC	3 cut(s)	94, 513, 612
ScrFI	CCNGG	4 cut(s)	312, 324, 511, 548
SetI	ASST	8 cut(s)	21, 58, 96, 145, 159, 281, 397, 538
SinI	GGWCC	2 cut(s)	94, 612
SmiMI	CAYNNNNRTG	1 cut(s)	255
Sse9I	AATT	1 cut(s)	424
SsiI	CCGC	1 cut(s)	66
SspI	AATATT	1 cut(s)	463
SspMI	CTAG	6 cut(s)	140, 144, 341, 396, 452, 543
StyD4I	CCNGG	4 cut(s)	310, 322, 509, 546
TaaI	ACNGT	1 cut(s)	203
TaiI	ACGT	2 cut(s)	21, 159
TasI	AATT	1 cut(s)	424
TatI	WGTACW	1 cut(s)	247
TauI	GCSGC	1 cut(s)	68
TfiI	GAWTC	2 cut(s)	415, 587
Tru1I	TTAA	2 cut(s)	401, 504
Tru9I	TTAA	2 cut(s)	401, 504
TscAI	CASTG	2 cut(s)	157, 436
TseFI	GTSAC	2 cut(s)	152, 470
TseI	GCWGC	3 cut(s)	32, 35, 53
Tsp45I	GTSAC	2 cut(s)	152, 470
TspDTI	ATGAA	1 cut(s)	539
TspGWI	ACGGA	1 cut(s)	604
TspRI	CASTG	2 cut(s)	157, 436
VpaK11BI	GGWCC	2 cut(s)	94, 612
XceI	RCATGY	1 cut(s)	254
XmiI	GTMKAC	1 cut(s)	121
XspI	CTAG	6 cut(s)	140, 144, 341, 396, 452, 543

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.