RLG00000016912

salt tolerance-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0004172
Physical Location & Seq
Forward (+)
11188805 .. 11190875
2071 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000016912

Sequence Viewer

Length: 564 bp
ATGCGAACACTTTGTGACGCTTGTGAAAGCGCAGCCGCGATCGTTTTCTGTGCTGCCGACGAAGCTGCTCTTTGCCGTGCCTGTGATGAAAAAGTGCATTTGTGCAATAAGCTTGCTAGCCGACATGTCCGGGTTGGTCTGGCAACTCCCAGTGCAGTTCCCCGCTGTGATATTTGTGAAAATGCACCCGCTTTCTTCTATTGCGAGATAGATGGGAGTTCCCTTTGTTTGCAATGTGATATGGTTGTTCATGTTGGAGGTAAAAGAACACACGGAAGATATCTGGTACTGAGACAAAGAGTTGAGTTCCCAGGGGATAAACCTAGTAGTAACGGTGAAGACCCAGCATCCCAACCCCCCATTGACCAAGGTGAGACCAGAAGAGTACAACATCAGCAACCAAGAATGACAATTGGAGAGAACCATCAAAATCACAGGGCATCTCCTATTCGTCTAGCAGATGCCAGTGATGATGGGCATGTGAAGATGGATAATAAGTTAATTGATTTGAACATGAAGCCTAATCGGATGCATGGACAAGCTTCAAATAAAGAGGATCAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-B_box

Protein Analysis

188

Amino Acids

20.63

Weight (kDa)

6.49

Isoelectric Point (pI)

51.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-B_box PF00643 53 - 85 8.5e-06 B-box zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 38
AciI CCGC 3 cut(s) 36, 163, 189
AdeI CACNNNGTG 1 cut(s) 14
AfaI GTAC 2 cut(s) 288, 387
AflIII ACRYGT 1 cut(s) 124
AgsI TTSAA 2 cut(s) 511, 546
AjnI CCWGG 1 cut(s) 310
AluBI AGCT 3 cut(s) 65, 112, 542
AluI AGCT 3 cut(s) 65, 112, 542
Alw26I GTCTC 2 cut(s) 286, 368
ApeKI GCWGC 3 cut(s) 32, 53, 65
AspLEI GCGC 1 cut(s) 32
AsuC2I CCSGG 1 cut(s) 131
AsuHPI GGTGA 2 cut(s) 347, 383
AsuNHI GCTAGC 1 cut(s) 116
BbsI GAAGAC 1 cut(s) 345
BbvI GCAGC 3 cut(s) 40, 44, 52
BccI CCATC 4 cut(s) 206, 432, 467, 481
BceAI ACGGC 1 cut(s) 60
BcgI CGANNNNNNTGC 2 cut(s) 47, 81
BciT130I CCWGG 1 cut(s) 312
BcnI CCSGG 1 cut(s) 131
BcoDI GTCTC 2 cut(s) 286, 368
BfaI CTAG 3 cut(s) 117, 324, 455
BisI GCNGC 4 cut(s) 33, 36, 54, 66
BlsI GCNGC 4 cut(s) 34, 37, 55, 67
Bme1390I CCNGG 2 cut(s) 131, 312
BmrFI CCNGG 2 cut(s) 131, 312
BmrI ACTGGG 1 cut(s) 144
BmsI GCATC 4 cut(s) 356, 449, 451, 519
BmtI GCTAGC 1 cut(s) 120
BmuI ACTGGG 1 cut(s) 144
BpiI GAAGAC 1 cut(s) 345
BpuMI CCSGG 1 cut(s) 131
BsaI GGTCTC 1 cut(s) 368
BsaJI CCNNGG 3 cut(s) 310, 311, 367
Bse1I ACTGG 2 cut(s) 150, 465
Bse3DI GCAATG 1 cut(s) 239
BseBI CCWGG 1 cut(s) 312
BseDI CCNNGG 3 cut(s) 310, 311, 367
BseGI GGATG 2 cut(s) 347, 534
BseMI GCAATG 1 cut(s) 239
BseMII CTCAG 1 cut(s) 281
BseNI ACTGG 2 cut(s) 150, 465
BseXI GCAGC 3 cut(s) 40, 44, 52
BseYI CCCAGC 1 cut(s) 343
BsgI GTGCAG 1 cut(s) 174
Bsh1236I CGCG 1 cut(s) 38
Bsh1285I CGRYCG 1 cut(s) 42
BsiEI CGRYCG 1 cut(s) 42
BsiSI CCGG 1 cut(s) 130
BsmAI GTCTC 2 cut(s) 286, 368
Bso31I GGTCTC 1 cut(s) 368
Bsp143I GATC 2 cut(s) 39, 556
BspACI CCGC 3 cut(s) 36, 163, 189
BspCNI CTCAG 1 cut(s) 282
BspFNI CGCG 1 cut(s) 38
BspOI GCTAGC 1 cut(s) 120
BspTNI GGTCTC 1 cut(s) 368
BsrDI GCAATG 1 cut(s) 239
BsrI ACTGG 2 cut(s) 150, 465
BssECI CCNNGG 3 cut(s) 310, 311, 367
BssMI GATC 2 cut(s) 39, 556
BssT1I CCWWGG 1 cut(s) 367
Bst2UI CCWGG 1 cut(s) 312
Bst4CI ACNGT 1 cut(s) 335
Bst6I CTCTTC 1 cut(s) 376
BstC8I GCNNGC 2 cut(s) 114, 118
BstDEI CTNAG 1 cut(s) 290
BstF5I GGATG 2 cut(s) 347, 534
BstFNI CGCG 1 cut(s) 38
BstHHI GCGC 1 cut(s) 32
BstKTI GATC 2 cut(s) 42, 559
BstMAI GTCTC 2 cut(s) 286, 368
BstMBI GATC 2 cut(s) 39, 556
BstMCI CGRYCG 1 cut(s) 42
BstMWI GCNNNNNNNGC 1 cut(s) 62
BstNI CCWGG 1 cut(s) 312
BstNSI RCATGY 2 cut(s) 128, 482
BstSCI CCNGG 2 cut(s) 129, 310
BstUI CGCG 1 cut(s) 38
BstV1I GCAGC 3 cut(s) 40, 44, 52
BstV2I GAAGAC 1 cut(s) 345
BtsCI GGATG 2 cut(s) 347, 534
BtsIMutI CAGTG 2 cut(s) 157, 472
Cac8I GCNNGC 2 cut(s) 114, 118
CfoI GCGC 1 cut(s) 32
CseI GACGC 1 cut(s) 26
Csp6I GTAC 2 cut(s) 287, 386
CviAII CATG 5 cut(s) 125, 251, 479, 514, 533
CviJI RGCY 6 cut(s) 35, 65, 112, 120, 520, 542
CviKI_1 RGCY 6 cut(s) 35, 65, 112, 120, 520, 542
CviQI GTAC 2 cut(s) 287, 386
DdeI CTNAG 1 cut(s) 290
DpnI GATC 2 cut(s) 41, 558
DpnII GATC 2 cut(s) 39, 556
DraIII CACNNNGTG 1 cut(s) 14
Eam1104I CTCTTC 1 cut(s) 376
EarI CTCTTC 1 cut(s) 376
Eco130I CCWWGG 1 cut(s) 367
Eco31I GGTCTC 1 cut(s) 368
Eco32I GATATC 1 cut(s) 281
EcoRII CCWGG 1 cut(s) 310
EcoRV GATATC 1 cut(s) 281
EcoT14I CCWWGG 1 cut(s) 367
EcoT22I ATGCAT 1 cut(s) 534
ErhI CCWWGG 1 cut(s) 367
FaeI CATG 5 cut(s) 128, 254, 482, 517, 536
FaiI YATR 6 cut(s) 126, 242, 252, 480, 515, 534
FalI AAGNNNNNCTT 2 cut(s) 54, 86
FatI CATG 5 cut(s) 124, 250, 478, 513, 532
FauI CCCGC 2 cut(s) 170, 196
Fnu4HI GCNGC 4 cut(s) 33, 36, 54, 66
FokI GGATG 2 cut(s) 334, 541
Fsp4HI GCNGC 4 cut(s) 33, 36, 54, 66
FspBI CTAG 3 cut(s) 117, 324, 455
GlaI GCGC 1 cut(s) 31
GluI GCNGC 4 cut(s) 33, 36, 54, 66
GsaI CCCAGC 1 cut(s) 347
HapII CCGG 1 cut(s) 130
HgaI GACGC 1 cut(s) 26
HhaI GCGC 1 cut(s) 32
Hin1II CATG 5 cut(s) 128, 254, 482, 517, 536
Hin6I GCGC 1 cut(s) 30
HinP1I GCGC 1 cut(s) 30
HindIII AAGCTT 2 cut(s) 110, 540
HpaII CCGG 1 cut(s) 130
HphI GGTGA 2 cut(s) 347, 383
Hpy188I TCNGA 1 cut(s) 528
Hpy99I CGWCG 1 cut(s) 62
HpyCH4III ACNGT 1 cut(s) 335
HpyCH4V TGCA 6 cut(s) 97, 105, 155, 185, 232, 532
HpyF10VI GCNNNNNNNGC 1 cut(s) 62
HpyF3I CTNAG 1 cut(s) 290
Hsp92II CATG 5 cut(s) 128, 254, 482, 517, 536
HspAI GCGC 1 cut(s) 30
Kzo9I GATC 2 cut(s) 39, 556
Lsp1109I GCAGC 3 cut(s) 40, 44, 52
LweI GCATC 4 cut(s) 356, 449, 451, 519
MaeI CTAG 3 cut(s) 117, 324, 455
MaeIII GTNAC 2 cut(s) 14, 329
MalI GATC 2 cut(s) 41, 558
MboI GATC 2 cut(s) 39, 556
MboII GAAGA 5 cut(s) 187, 288, 350, 393, 496
MfeI CAATTG 1 cut(s) 411
MluCI AATT 2 cut(s) 411, 501
MmeI TCCRAC 1 cut(s) 235
MnlI CCTC 2 cut(s) 251, 547
Mph1103I ATGCAT 1 cut(s) 534
MseI TTAA 1 cut(s) 500
MspA1I CMGCKG 1 cut(s) 165
MspI CCGG 1 cut(s) 130
MspR9I CCNGG 2 cut(s) 131, 312
MunI CAATTG 1 cut(s) 411
MvaI CCWGG 1 cut(s) 312
MvnI CGCG 1 cut(s) 38
MwoI GCNNNNNNNGC 1 cut(s) 62
NciI CCSGG 1 cut(s) 131
NdeII GATC 2 cut(s) 39, 556
NheI GCTAGC 1 cut(s) 116
NlaIII CATG 5 cut(s) 128, 254, 482, 517, 536
NmuCI GTSAC 1 cut(s) 14
NsiI ATGCAT 1 cut(s) 534
NspI RCATGY 2 cut(s) 128, 482
PasI CCCWGGG 1 cut(s) 311
PciI ACATGT 1 cut(s) 124
PkrI GCNGC 4 cut(s) 34, 37, 55, 67
Ple19I CGATCG 1 cut(s) 42
PscI ACATGT 1 cut(s) 124
Psp6I CCWGG 1 cut(s) 310
PspFI CCCAGC 1 cut(s) 343
PspGI CCWGG 1 cut(s) 310
PvuI CGATCG 1 cut(s) 42
RsaI GTAC 2 cut(s) 288, 387
RsaNI GTAC 2 cut(s) 287, 386
SaqAI TTAA 1 cut(s) 500
SatI GCNGC 4 cut(s) 33, 36, 54, 66
Sau3AI GATC 2 cut(s) 39, 556
ScrFI CCNGG 2 cut(s) 131, 312
SetI ASST 6 cut(s) 67, 114, 262, 325, 373, 544
SfaNI GCATC 4 cut(s) 356, 449, 451, 519
Sse9I AATT 2 cut(s) 411, 501
SsiI CCGC 3 cut(s) 36, 163, 189
SspMI CTAG 3 cut(s) 117, 324, 455
StyD4I CCNGG 2 cut(s) 129, 310
StyI CCWWGG 1 cut(s) 367
TaaI ACNGT 1 cut(s) 335
TasI AATT 2 cut(s) 411, 501
TatI WGTACW 1 cut(s) 385
TauI GCSGC 1 cut(s) 38
Tru1I TTAA 1 cut(s) 500
Tru9I TTAA 1 cut(s) 500
TscAI CASTG 2 cut(s) 157, 472
TseFI GTSAC 1 cut(s) 14
TseI GCWGC 3 cut(s) 32, 53, 65
Tsp45I GTSAC 1 cut(s) 14
TspDTI ATGAA 3 cut(s) 102, 239, 530
TspGWI ACGGA 1 cut(s) 288
TspRI CASTG 2 cut(s) 157, 472
XceI RCATGY 2 cut(s) 128, 482
XspI CTAG 3 cut(s) 117, 324, 455
Zsp2I ATGCAT 1 cut(s) 534
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.