MD10G1063500.v1.1

salt tolerance-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr10
OG0004172
Physical Location & Seq
Forward (+)
8647237 .. 8650874
3638 bp
Loading structure...
UTR
Exon/CDS
Intron
MD10G1063500.v1.1.491

Sequence Viewer

Length: 564 bp
ATGCGAACGCTTTGTGATGTGTGCGAGAGCGCCGCTGCCATCCTCTTCTGCGCGGCCGACGAGGCCGCCCTCTGCCGTTCCTGCGACGAAAAGGTCCATCTGTGTAATAAACTTGCCAATAGACATGTACGGGTTGGGATAGCCACACCTAGTGATGTTCCTTGCTGTGATATTTGCGAAAATGCACCTGCGTTCTTTTACTGTGAGGTAGATGGTAGTTCTCTTTGCCTGCAGTGTGATATGATTGTACATGTCGGTGGGAAAAGAACCCACGGGAGGTATCTCCTCTTCAGACAGAGAGTTGAGTTTCCAGGGAATAAGCTTGGCCGTTCAGAGGAACTAGGGCTTCAACCACTTGACCAAAAGAAGGTACAAAGGGACCAAAATCAGCAGCCTGATTTAAAAACAGGAGAGAATCAACATAATCACAATGTCTCTCCAACTGCAGTCCTATACAACAATATTGATGGTGACTACAAAATGGACAATACACCCATTGATCTTAATAGCAGGCCCCAAAGAATACGCGGAACAGGGTGTGGGTGTTCTAAATGGTGTGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-B_box

Protein Analysis

188

Amino Acids

20.85

Weight (kDa)

6.3

Isoelectric Point (pI)

47.63

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-B_box PF00643 3 - 42 9.1e-06 B-box zinc finger
zf-B_box PF00643 52 - 85 9.2e-06 B-box zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 196
AasI GACNNNNNNGTC 1 cut(s) 92
Acc36I ACCTGC 1 cut(s) 196
AccII CGCG 2 cut(s) 53, 528
AciI CCGC 4 cut(s) 33, 53, 66, 528
AcoI YGGCCR 2 cut(s) 54, 325
AcuI CTGAAG 1 cut(s) 274
AdeI CACNNNGTG 1 cut(s) 152
AfaI GTAC 3 cut(s) 129, 249, 372
AfiI CCNNNNNNNGG 3 cut(s) 276, 334, 367
AflIII ACRYGT 2 cut(s) 124, 250
AgsI TTSAA 1 cut(s) 350
AjnI CCWGG 1 cut(s) 310
AluBI AGCT 1 cut(s) 322
AluI AGCT 1 cut(s) 322
Alw26I GTCTC 1 cut(s) 439
AoxI GGCC 4 cut(s) 54, 63, 325, 512
ApeKI GCWGC 2 cut(s) 35, 391
AspLEI GCGC 2 cut(s) 32, 53
AspS9I GGNCC 3 cut(s) 94, 379, 513
AsuHPI GGTGA 1 cut(s) 482
AvaII GGWCC 2 cut(s) 94, 379
BarI GAAGNNNNNNTAC 2 cut(s) 272, 304
BbvI GCAGC 2 cut(s) 22, 403
BccI CCATC 4 cut(s) 47, 105, 206, 461
BceAI ACGGC 2 cut(s) 60, 312
BciT130I CCWGG 1 cut(s) 312
BcoDI GTCTC 1 cut(s) 439
BfaI CTAG 2 cut(s) 150, 341
BfmI CTRYAG 2 cut(s) 230, 444
BfoI RGCGCY 1 cut(s) 33
BfuAI ACCTGC 1 cut(s) 196
BglI GCCNNNNNGGC 1 cut(s) 62
BisI GCNGC 5 cut(s) 33, 36, 54, 66, 392
BlsI GCNGC 5 cut(s) 34, 37, 55, 67, 393
Bme1390I CCNGG 1 cut(s) 312
Bme18I GGWCC 2 cut(s) 94, 379
BmgT120I GGNCC 3 cut(s) 94, 379, 513
BmiI GGNNCC 2 cut(s) 380, 515
BmrFI CCNGG 1 cut(s) 312
BsaJI CCNNGG 2 cut(s) 271, 311
Bsc4I CCNNNNNNNGG 3 cut(s) 276, 334, 367
BseBI CCWGG 1 cut(s) 312
BseDI CCNNGG 2 cut(s) 271, 311
BseGI GGATG 1 cut(s) 39
BseLI CCNNNNNNNGG 3 cut(s) 276, 334, 367
BseRI GAGGAG 1 cut(s) 275
BseX3I CGGCCG 1 cut(s) 54
BseXI GCAGC 2 cut(s) 22, 403
Bsh1236I CGCG 2 cut(s) 53, 528
Bsh1285I CGRYCG 1 cut(s) 57
BshFI GGCC 4 cut(s) 56, 65, 327, 514
BsiEI CGRYCG 1 cut(s) 57
BslFI GGGAC 1 cut(s) 392
BslI CCNNNNNNNGG 3 cut(s) 276, 334, 367
BsmAI GTCTC 1 cut(s) 439
BsmFI GGGAC 1 cut(s) 392
BsnI GGCC 4 cut(s) 56, 65, 327, 514
Bsp1407I TGTACA 1 cut(s) 247
Bsp143I GATC 1 cut(s) 499
BspACI CCGC 4 cut(s) 33, 53, 66, 528
BspANI GGCC 4 cut(s) 56, 65, 327, 514
BspFNI CGCG 2 cut(s) 53, 528
BspLI GGNNCC 2 cut(s) 380, 515
BspMAI CTGCAG 2 cut(s) 234, 448
BspMI ACCTGC 1 cut(s) 196
BsrGI TGTACA 1 cut(s) 247
BssECI CCNNGG 2 cut(s) 271, 311
BssMI GATC 1 cut(s) 499
Bst2UI CCWGG 1 cut(s) 312
Bst4CI ACNGT 1 cut(s) 203
Bst6I CTCTTC 2 cut(s) 50, 293
BstAUI TGTACA 1 cut(s) 247
BstC8I GCNNGC 2 cut(s) 230, 512
BstDSI CCRYGG 1 cut(s) 271
BstF5I GGATG 1 cut(s) 39
BstFNI CGCG 2 cut(s) 53, 528
BstH2I RGCGCY 1 cut(s) 33
BstHHI GCGC 2 cut(s) 32, 53
BstKTI GATC 1 cut(s) 502
BstMAI GTCTC 1 cut(s) 439
BstMBI GATC 1 cut(s) 499
BstMCI CGRYCG 1 cut(s) 57
BstMWI GCNNNNNNNGC 2 cut(s) 62, 81
BstNI CCWGG 1 cut(s) 312
BstNSI RCATGY 2 cut(s) 128, 254
BstSCI CCNGG 1 cut(s) 310
BstSFI CTRYAG 2 cut(s) 230, 444
BstUI CGCG 2 cut(s) 53, 528
BstV1I GCAGC 2 cut(s) 22, 403
BstZI CGGCCG 1 cut(s) 54
BsuRI GGCC 4 cut(s) 56, 65, 327, 514
BtgI CCRYGG 1 cut(s) 271
BtsCI GGATG 1 cut(s) 39
BtsI GCAGTG 1 cut(s) 239
BtsIMutI CAGTG 1 cut(s) 239
BveI ACCTGC 1 cut(s) 196
Cac8I GCNNGC 2 cut(s) 230, 512
CfoI GCGC 2 cut(s) 32, 53
Cfr13I GGNCC 3 cut(s) 94, 379, 513
Csp6I GTAC 3 cut(s) 128, 248, 371
CviAII CATG 2 cut(s) 125, 251
CviJI RGCY 8 cut(s) 56, 65, 143, 322, 327, 346, 394, 514
CviKI_1 RGCY 8 cut(s) 56, 65, 143, 322, 327, 346, 394, 514
CviQI GTAC 3 cut(s) 128, 248, 371
DpnI GATC 1 cut(s) 501
DpnII GATC 1 cut(s) 499
DraI TTTAAA 1 cut(s) 402
DraIII CACNNNGTG 1 cut(s) 152
DrdI GACNNNNNNGTC 1 cut(s) 92
DseDI GACNNNNNNGTC 1 cut(s) 92
EaeI YGGCCR 2 cut(s) 54, 325
EagI CGGCCG 1 cut(s) 54
Eam1104I CTCTTC 2 cut(s) 50, 293
EarI CTCTTC 2 cut(s) 50, 293
EclXI CGGCCG 1 cut(s) 54
Eco47I GGWCC 2 cut(s) 94, 379
Eco52I CGGCCG 1 cut(s) 54
Eco57I CTGAAG 1 cut(s) 274
EcoO109I RGGNCCY 1 cut(s) 513
EcoRII CCWGG 1 cut(s) 310
FaeI CATG 2 cut(s) 128, 254
FaiI YATR 5 cut(s) 126, 242, 252, 423, 454
FaqI GGGAC 1 cut(s) 392
FatI CATG 2 cut(s) 124, 250
Fnu4HI GCNGC 5 cut(s) 33, 36, 54, 66, 392
FokI GGATG 1 cut(s) 26
Fsp4HI GCNGC 5 cut(s) 33, 36, 54, 66, 392
FspBI CTAG 2 cut(s) 150, 341
GlaI GCGC 2 cut(s) 31, 52
GluI GCNGC 5 cut(s) 33, 36, 54, 66, 392
HaeII RGCGCY 1 cut(s) 33
HaeIII GGCC 4 cut(s) 56, 65, 327, 514
HhaI GCGC 2 cut(s) 32, 53
Hin1II CATG 2 cut(s) 128, 254
Hin6I GCGC 2 cut(s) 30, 51
HinP1I GCGC 2 cut(s) 30, 51
HindIII AAGCTT 1 cut(s) 320
HinfI GANTC 1 cut(s) 415
HphI GGTGA 1 cut(s) 482
Hpy188I TCNGA 2 cut(s) 293, 334
Hpy99I CGWCG 2 cut(s) 62, 89
HpyAV CCTTC 1 cut(s) 361
HpyCH4III ACNGT 1 cut(s) 203
HpyCH4V TGCA 3 cut(s) 185, 232, 446
HpyF10VI GCNNNNNNNGC 2 cut(s) 62, 81
Hsp92II CATG 2 cut(s) 128, 254
HspAI GCGC 2 cut(s) 30, 51
Kzo9I GATC 1 cut(s) 499
LpnPI CCDG 9 cut(s) 94, 201, 242, 297, 324, 393, 408, 496, 519
Lsp1109I GCAGC 2 cut(s) 22, 403
MaeI CTAG 2 cut(s) 150, 341
MaeIII GTNAC 1 cut(s) 470
MalI GATC 1 cut(s) 501
MboI GATC 1 cut(s) 499
MboII GAAGA 2 cut(s) 37, 280
MmeI TCCRAC 1 cut(s) 464
MnlI CCTC 7 cut(s) 53, 55, 80, 199, 270, 296, 328
MseI TTAA 2 cut(s) 401, 504
MslI CAYNNNNRTG 1 cut(s) 255
MspA1I CMGCKG 1 cut(s) 35
MspR9I CCNGG 1 cut(s) 312
MvaI CCWGG 1 cut(s) 312
MvnI CGCG 2 cut(s) 53, 528
MwoI GCNNNNNNNGC 2 cut(s) 62, 81
NdeII GATC 1 cut(s) 499
NlaIII CATG 2 cut(s) 128, 254
NlaIV GGNNCC 2 cut(s) 380, 515
NmuCI GTSAC 1 cut(s) 470
NspI RCATGY 2 cut(s) 128, 254
PaqCI CACCTGC 1 cut(s) 196
PciI ACATGT 2 cut(s) 124, 250
PfeI GAWTC 1 cut(s) 415
PkrI GCNGC 5 cut(s) 34, 37, 55, 67, 393
PscI ACATGT 2 cut(s) 124, 250
Psp6I CCWGG 1 cut(s) 310
PspGI CCWGG 1 cut(s) 310
PspN4I GGNNCC 2 cut(s) 380, 515
PspPI GGNCC 3 cut(s) 94, 379, 513
PstI CTGCAG 2 cut(s) 234, 448
RsaI GTAC 3 cut(s) 129, 249, 372
RsaNI GTAC 3 cut(s) 128, 248, 371
RseI CAYNNNNRTG 1 cut(s) 255
SaqAI TTAA 2 cut(s) 401, 504
SatI GCNGC 5 cut(s) 33, 36, 54, 66, 392
Sau3AI GATC 1 cut(s) 499
Sau96I GGNCC 3 cut(s) 94, 379, 513
ScrFI CCNGG 1 cut(s) 312
SetI ASST 7 cut(s) 96, 151, 190, 210, 281, 324, 372
SfcI CTRYAG 2 cut(s) 230, 444
SfiI GGCCNNNNNGGCC 1 cut(s) 62
SinI GGWCC 2 cut(s) 94, 379
SmiMI CAYNNNNRTG 1 cut(s) 255
SsiI CCGC 4 cut(s) 33, 53, 66, 528
SspI AATATT 1 cut(s) 463
SspMI CTAG 2 cut(s) 150, 341
StyD4I CCNGG 1 cut(s) 310
TaaI ACNGT 1 cut(s) 203
TatI WGTACW 1 cut(s) 247
TauI GCSGC 3 cut(s) 35, 56, 68
TfiI GAWTC 1 cut(s) 415
Tru1I TTAA 2 cut(s) 401, 504
Tru9I TTAA 2 cut(s) 401, 504
TscAI CASTG 1 cut(s) 239
TseFI GTSAC 1 cut(s) 470
TseI GCWGC 2 cut(s) 35, 391
Tsp45I GTSAC 1 cut(s) 470
TspRI CASTG 1 cut(s) 239
VpaK11BI GGWCC 2 cut(s) 94, 379
XceI RCATGY 2 cut(s) 128, 254
XspI CTAG 2 cut(s) 150, 341
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.