Rh2CG136700

salt tolerance-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0004172
Physical Location & Seq
Forward (+)
12116110 .. 12119632
3523 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG136700.1

Sequence Viewer

Length: 483 bp
ATGGTGTGGCAGGTGCATTTGTGCAATAAGCTTGCTAGCCGACATGTCCGGGTTGGTCTGGCAACTCCCAGTGCAGTTCCCCGCTGTGATATTTGTGAAAATGCACCCGCTTTCTTCTATTGCGAGATAGATGGGAGTTCCCTTTGTTTGCAATGTGATATGGTTGTTCATGTTGGAGGTAAAAGAACACACGGAAGATATCTGGTACTGAGACAAAGAGTTGAGTTTCCAGGGGATAAACCTAGTAGTAACGGTGAAGACCCAGCATCCCAACCCCCCATTGACCAAGGTGAGACCAGAAGAGTACAACATCAGCAACCAAGAATGACAATTGGAGAGAACCATCAAAATCACAGGGCATCTCCTATTCGTCTAGCAGATGCTAATGATGATGGGCATGTAAAGATGGATAATAAGTTAATTGATTTGAACATGAAGCCTAATCGGATGCATGGACAAGCTTCAAATAAAGAGGACCAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-B_box

Protein Analysis

160

Amino Acids

17.97

Weight (kDa)

7.71

Isoelectric Point (pI)

51.07

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-B_box PF00643 26 - 58 6.5e-06 B-box zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 82, 108
AfaI GTAC 2 cut(s) 207, 306
AflIII ACRYGT 1 cut(s) 43
AgsI TTSAA 2 cut(s) 430, 465
AjnI CCWGG 1 cut(s) 229
AluBI AGCT 2 cut(s) 31, 461
AluI AGCT 2 cut(s) 31, 461
Alw26I GTCTC 2 cut(s) 205, 287
AspS9I GGNCC 1 cut(s) 475
AsuC2I CCSGG 1 cut(s) 50
AsuHPI GGTGA 2 cut(s) 266, 302
AsuNHI GCTAGC 1 cut(s) 35
AvaII GGWCC 1 cut(s) 475
BbsI GAAGAC 1 cut(s) 264
BccI CCATC 4 cut(s) 125, 351, 386, 400
BciT130I CCWGG 1 cut(s) 231
BcnI CCSGG 1 cut(s) 50
BcoDI GTCTC 2 cut(s) 205, 287
BfaI CTAG 3 cut(s) 36, 243, 374
Bme1390I CCNGG 2 cut(s) 50, 231
Bme18I GGWCC 1 cut(s) 475
BmgT120I GGNCC 1 cut(s) 475
BmrFI CCNGG 2 cut(s) 50, 231
BmrI ACTGGG 1 cut(s) 63
BmsI GCATC 4 cut(s) 275, 368, 370, 438
BmtI GCTAGC 1 cut(s) 39
BmuI ACTGGG 1 cut(s) 63
BpiI GAAGAC 1 cut(s) 264
BpuMI CCSGG 1 cut(s) 50
BsaI GGTCTC 1 cut(s) 287
BsaJI CCNNGG 2 cut(s) 230, 286
Bse1I ACTGG 1 cut(s) 69
Bse3DI GCAATG 1 cut(s) 158
BseBI CCWGG 1 cut(s) 231
BseDI CCNNGG 2 cut(s) 230, 286
BseGI GGATG 2 cut(s) 266, 453
BseMI GCAATG 1 cut(s) 158
BseMII CTCAG 1 cut(s) 200
BseNI ACTGG 1 cut(s) 69
BseYI CCCAGC 1 cut(s) 262
BsgI GTGCAG 1 cut(s) 93
BsiSI CCGG 1 cut(s) 49
BsmAI GTCTC 2 cut(s) 205, 287
Bso31I GGTCTC 1 cut(s) 287
BspACI CCGC 2 cut(s) 82, 108
BspCNI CTCAG 1 cut(s) 201
BspOI GCTAGC 1 cut(s) 39
BspTNI GGTCTC 1 cut(s) 287
BsrDI GCAATG 1 cut(s) 158
BsrI ACTGG 1 cut(s) 69
BssECI CCNNGG 2 cut(s) 230, 286
BssT1I CCWWGG 1 cut(s) 286
Bst2UI CCWGG 1 cut(s) 231
Bst4CI ACNGT 1 cut(s) 254
Bst6I CTCTTC 1 cut(s) 295
BstC8I GCNNGC 2 cut(s) 33, 37
BstDEI CTNAG 1 cut(s) 209
BstF5I GGATG 2 cut(s) 266, 453
BstMAI GTCTC 2 cut(s) 205, 287
BstNI CCWGG 1 cut(s) 231
BstNSI RCATGY 2 cut(s) 47, 401
BstSCI CCNGG 2 cut(s) 48, 229
BstV2I GAAGAC 1 cut(s) 264
BtsCI GGATG 2 cut(s) 266, 453
BtsIMutI CAGTG 1 cut(s) 76
Cac8I GCNNGC 2 cut(s) 33, 37
Cfr13I GGNCC 1 cut(s) 475
Csp6I GTAC 2 cut(s) 206, 305
CviAII CATG 5 cut(s) 44, 170, 398, 433, 452
CviJI RGCY 4 cut(s) 31, 39, 439, 461
CviKI_1 RGCY 4 cut(s) 31, 39, 439, 461
CviQI GTAC 2 cut(s) 206, 305
DdeI CTNAG 1 cut(s) 209
Eam1104I CTCTTC 1 cut(s) 295
EarI CTCTTC 1 cut(s) 295
Eco130I CCWWGG 1 cut(s) 286
Eco31I GGTCTC 1 cut(s) 287
Eco32I GATATC 1 cut(s) 200
Eco47I GGWCC 1 cut(s) 475
EcoRII CCWGG 1 cut(s) 229
EcoRV GATATC 1 cut(s) 200
EcoT14I CCWWGG 1 cut(s) 286
EcoT22I ATGCAT 1 cut(s) 453
ErhI CCWWGG 1 cut(s) 286
FaeI CATG 5 cut(s) 47, 173, 401, 436, 455
FaiI YATR 6 cut(s) 45, 161, 171, 399, 434, 453
FatI CATG 5 cut(s) 43, 169, 397, 432, 451
FauI CCCGC 2 cut(s) 89, 115
FokI GGATG 2 cut(s) 253, 460
FspBI CTAG 3 cut(s) 36, 243, 374
GsaI CCCAGC 1 cut(s) 266
HapII CCGG 1 cut(s) 49
Hin1II CATG 5 cut(s) 47, 173, 401, 436, 455
HindIII AAGCTT 2 cut(s) 29, 459
HpaII CCGG 1 cut(s) 49
HphI GGTGA 2 cut(s) 266, 302
Hpy188I TCNGA 1 cut(s) 447
HpyCH4III ACNGT 1 cut(s) 254
HpyCH4V TGCA 6 cut(s) 16, 24, 74, 104, 151, 451
HpyF3I CTNAG 1 cut(s) 209
Hsp92II CATG 5 cut(s) 47, 173, 401, 436, 455
LpnPI CCDG 9 cut(s) 44, 62, 82, 188, 216, 243, 276, 310, 340
LweI GCATC 4 cut(s) 275, 368, 370, 438
MaeI CTAG 3 cut(s) 36, 243, 374
MaeIII GTNAC 1 cut(s) 248
MboII GAAGA 4 cut(s) 106, 207, 269, 312
MfeI CAATTG 1 cut(s) 330
MluCI AATT 2 cut(s) 330, 420
MmeI TCCRAC 1 cut(s) 154
MnlI CCTC 2 cut(s) 170, 466
Mph1103I ATGCAT 1 cut(s) 453
MseI TTAA 1 cut(s) 419
MspA1I CMGCKG 1 cut(s) 84
MspI CCGG 1 cut(s) 49
MspR9I CCNGG 2 cut(s) 50, 231
MunI CAATTG 1 cut(s) 330
MvaI CCWGG 1 cut(s) 231
NciI CCSGG 1 cut(s) 50
NheI GCTAGC 1 cut(s) 35
NlaIII CATG 5 cut(s) 47, 173, 401, 436, 455
NsiI ATGCAT 1 cut(s) 453
NspI RCATGY 2 cut(s) 47, 401
PciI ACATGT 1 cut(s) 43
PscI ACATGT 1 cut(s) 43
Psp6I CCWGG 1 cut(s) 229
PspFI CCCAGC 1 cut(s) 262
PspGI CCWGG 1 cut(s) 229
PspPI GGNCC 1 cut(s) 475
RsaI GTAC 2 cut(s) 207, 306
RsaNI GTAC 2 cut(s) 206, 305
SaqAI TTAA 1 cut(s) 419
Sau96I GGNCC 1 cut(s) 475
ScrFI CCNGG 2 cut(s) 50, 231
SetI ASST 6 cut(s) 15, 33, 181, 244, 292, 463
SfaNI GCATC 4 cut(s) 275, 368, 370, 438
SinI GGWCC 1 cut(s) 475
Sse9I AATT 2 cut(s) 330, 420
SsiI CCGC 2 cut(s) 82, 108
SspMI CTAG 3 cut(s) 36, 243, 374
StyD4I CCNGG 2 cut(s) 48, 229
StyI CCWWGG 1 cut(s) 286
TaaI ACNGT 1 cut(s) 254
TasI AATT 2 cut(s) 330, 420
TatI WGTACW 1 cut(s) 304
Tru1I TTAA 1 cut(s) 419
Tru9I TTAA 1 cut(s) 419
TscAI CASTG 1 cut(s) 76
TspDTI ATGAA 2 cut(s) 158, 449
TspGWI ACGGA 1 cut(s) 207
TspRI CASTG 1 cut(s) 76
VpaK11BI GGWCC 1 cut(s) 475
XceI RCATGY 2 cut(s) 47, 401
XspI CTAG 3 cut(s) 36, 243, 374
Zsp2I ATGCAT 1 cut(s) 453
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.