MD02G1110700.v1.1

salt tolerance-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr02
OG0004172
Physical Location & Seq
Forward (+)
8999485 .. 9002454
2970 bp
Loading structure...
UTR
Exon/CDS
Intron
MD02G1110700.v1.1.491

Sequence Viewer

Length: 558 bp
ATGAGAACACTTTGTGATTCCTGTGAAAGCGCAGCCGCAATCGTGTTTTGCGCTGCCGACGAGGCTGCTCTTTGCCGCGCCTGCGACGAGAAGGTTCATATGTGCAATAAGCTTGCTAGCCGGCATGTTCGCGTTGGTCTTGCAACTCCAAGTGAGGTTCCCCGCTGTGACATTTGTGAAAACGCACCTGCTTTCTTTTATTGCGAGATAGATGGAAGTTCCCTCTGTTTGCAATGTGATATGATTGTTCATGTTGGAGGCAAAAGAATGCATGGAAGATATCTTGTACTGAGACAAAGAGTTGAGTTTCCAGGAGATAAACCTGGTAATAGTGATGACCCAGCTTCCCAACCCATTGATCCAGCTGAGATCAGAAGAGTACAACAACACCATCCACCTAGAATGACAATAGGAGAGAACCCGCAAAATCACCGGGTGTCCCCTATTCGTGCTTCAGATGCCAATGCTGATGGGCATGTAAAGATGGATAATAAGTTGATTGATTTGAACATGAAGCCTCATCGGATGCATGGACAAGCTTCAAACAAAGAGGACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-B_box

Protein Analysis

186

Amino Acids

20.51

Weight (kDa)

6.54

Isoelectric Point (pI)

55.94

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-B_box PF00643 52 - 85 8.7e-06 B-box zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 196
Acc36I ACCTGC 1 cut(s) 196
AccII CGCG 2 cut(s) 78, 132
AciI CCGC 4 cut(s) 36, 76, 163, 422
AclWI GGATC 1 cut(s) 353
AcuI CTGAAG 1 cut(s) 438
AdeI CACNNNGTG 2 cut(s) 14, 436
AfaI GTAC 2 cut(s) 288, 381
AgsI TTSAA 2 cut(s) 508, 543
AjnI CCWGG 2 cut(s) 310, 322
AluBI AGCT 4 cut(s) 112, 344, 365, 539
AluI AGCT 4 cut(s) 112, 344, 365, 539
Alw26I GTCTC 1 cut(s) 286
AlwI GGATC 1 cut(s) 353
ApeKI GCWGC 3 cut(s) 32, 53, 65
AspLEI GCGC 3 cut(s) 32, 53, 80
AsuC2I CCSGG 1 cut(s) 434
AsuHPI GGTGA 1 cut(s) 422
AsuNHI GCTAGC 1 cut(s) 116
BbvI GCAGC 3 cut(s) 40, 44, 52
BccI CCATC 4 cut(s) 206, 399, 464, 478
BcgI CGANNNNNNTGC 2 cut(s) 47, 81
BciT130I CCWGG 2 cut(s) 312, 324
BcnI CCSGG 1 cut(s) 434
BcoDI GTCTC 1 cut(s) 286
BfaI CTAG 3 cut(s) 117, 399, 556
BfuAI ACCTGC 1 cut(s) 196
BglI GCCNNNNNGGC 1 cut(s) 62
BisI GCNGC 5 cut(s) 33, 36, 54, 66, 76
BlsI GCNGC 5 cut(s) 34, 37, 55, 67, 77
Bme1390I CCNGG 3 cut(s) 312, 324, 434
BmiI GGNNCC 1 cut(s) 159
BmrFI CCNGG 3 cut(s) 312, 324, 434
BmsI GCATC 2 cut(s) 448, 516
BmtI GCTAGC 1 cut(s) 120
BpuMI CCSGG 1 cut(s) 434
Bse118I RCCGGY 1 cut(s) 120
Bse3DI GCAATG 1 cut(s) 239
BseBI CCWGG 2 cut(s) 312, 324
BseGI GGATG 2 cut(s) 391, 531
BseMI GCAATG 1 cut(s) 239
BseMII CTCAG 2 cut(s) 281, 357
BseXI GCAGC 3 cut(s) 40, 44, 52
BseYI CCCAGC 1 cut(s) 340
Bsh1236I CGCG 2 cut(s) 78, 132
BsiSI CCGG 2 cut(s) 121, 433
BslFI GGGAC 1 cut(s) 424
BsmAI GTCTC 1 cut(s) 286
BsmFI GGGAC 1 cut(s) 424
BsmI GAATGC 1 cut(s) 273
Bsp143I GATC 2 cut(s) 358, 369
BspACI CCGC 4 cut(s) 36, 76, 163, 422
BspCNI CTCAG 2 cut(s) 282, 358
BspFNI CGCG 2 cut(s) 78, 132
BspLI GGNNCC 1 cut(s) 159
BspMI ACCTGC 1 cut(s) 196
BspOI GCTAGC 1 cut(s) 120
BspPI GGATC 1 cut(s) 353
BsrDI GCAATG 1 cut(s) 239
BsrFI RCCGGY 1 cut(s) 120
BssAI RCCGGY 1 cut(s) 120
BssMI GATC 2 cut(s) 358, 369
Bst2UI CCWGG 2 cut(s) 312, 324
Bst6I CTCTTC 1 cut(s) 370
BstC8I GCNNGC 4 cut(s) 82, 114, 118, 122
BstDEI CTNAG 2 cut(s) 290, 366
BstF5I GGATG 2 cut(s) 391, 531
BstFNI CGCG 2 cut(s) 78, 132
BstHHI GCGC 3 cut(s) 32, 53, 80
BstKTI GATC 2 cut(s) 361, 372
BstMAI GTCTC 1 cut(s) 286
BstMBI GATC 2 cut(s) 358, 369
BstMWI GCNNNNNNNGC 3 cut(s) 62, 81, 458
BstNI CCWGG 2 cut(s) 312, 324
BstNSI RCATGY 2 cut(s) 128, 479
BstSCI CCNGG 3 cut(s) 310, 322, 432
BstUI CGCG 2 cut(s) 78, 132
BstV1I GCAGC 3 cut(s) 40, 44, 52
BtsCI GGATG 2 cut(s) 391, 531
BveI ACCTGC 1 cut(s) 196
Cac8I GCNNGC 4 cut(s) 82, 114, 118, 122
CfoI GCGC 3 cut(s) 32, 53, 80
Cfr10I RCCGGY 1 cut(s) 120
CsiI ACCWGGT 1 cut(s) 322
Csp6I GTAC 2 cut(s) 287, 380
CviAII CATG 6 cut(s) 125, 251, 272, 476, 511, 530
CviJI RGCY 8 cut(s) 35, 65, 112, 120, 344, 365, 517, 539
CviKI_1 RGCY 8 cut(s) 35, 65, 112, 120, 344, 365, 517, 539
CviQI GTAC 2 cut(s) 287, 380
DdeI CTNAG 2 cut(s) 290, 366
DpnI GATC 2 cut(s) 360, 371
DpnII GATC 2 cut(s) 358, 369
DraIII CACNNNGTG 2 cut(s) 14, 436
Eam1104I CTCTTC 1 cut(s) 370
EarI CTCTTC 1 cut(s) 370
Eco32I GATATC 1 cut(s) 281
Eco57I CTGAAG 1 cut(s) 438
EcoRII CCWGG 2 cut(s) 310, 322
EcoRV GATATC 1 cut(s) 281
EcoT22I ATGCAT 2 cut(s) 273, 531
FaeI CATG 6 cut(s) 128, 254, 275, 479, 514, 533
FaiI YATR 9 cut(s) 99, 101, 126, 242, 252, 273, 477, 512, 531
FaqI GGGAC 1 cut(s) 424
FatI CATG 6 cut(s) 124, 250, 271, 475, 510, 529
FauI CCCGC 2 cut(s) 170, 429
FauNDI CATATG 1 cut(s) 99
Fnu4HI GCNGC 5 cut(s) 33, 36, 54, 66, 76
FokI GGATG 2 cut(s) 378, 538
Fsp4HI GCNGC 5 cut(s) 33, 36, 54, 66, 76
FspBI CTAG 3 cut(s) 117, 399, 556
GlaI GCGC 3 cut(s) 31, 52, 79
GluI GCNGC 5 cut(s) 33, 36, 54, 66, 76
GsaI CCCAGC 1 cut(s) 344
HapII CCGG 2 cut(s) 121, 433
HhaI GCGC 3 cut(s) 32, 53, 80
Hin1II CATG 6 cut(s) 128, 254, 275, 479, 514, 533
Hin6I GCGC 3 cut(s) 30, 51, 78
HinP1I GCGC 3 cut(s) 30, 51, 78
HindIII AAGCTT 2 cut(s) 110, 537
HinfI GANTC 1 cut(s) 17
HpaII CCGG 2 cut(s) 121, 433
HphI GGTGA 1 cut(s) 422
Hpy188I TCNGA 3 cut(s) 374, 457, 525
Hpy99I CGWCG 2 cut(s) 62, 89
HpyAV CCTTC 1 cut(s) 85
HpyCH4V TGCA 5 cut(s) 105, 143, 232, 271, 529
HpyF10VI GCNNNNNNNGC 3 cut(s) 62, 81, 458
HpyF3I CTNAG 2 cut(s) 290, 366
Hsp92II CATG 6 cut(s) 128, 254, 275, 479, 514, 533
HspAI GCGC 3 cut(s) 30, 51, 78
KroI GCCGGC 1 cut(s) 120
KroNI GCCGGC 1 cut(s) 122
Kzo9I GATC 2 cut(s) 358, 369
Lsp1109I GCAGC 3 cut(s) 40, 44, 52
LweI GCATC 2 cut(s) 448, 516
MabI ACCWGGT 1 cut(s) 322
MaeI CTAG 3 cut(s) 117, 399, 556
MaeIII GTNAC 1 cut(s) 167
MalI GATC 2 cut(s) 360, 371
MboI GATC 2 cut(s) 358, 369
MboII GAAGA 2 cut(s) 288, 387
MmeI TCCRAC 1 cut(s) 235
MnlI CCTC 6 cut(s) 55, 148, 233, 251, 528, 544
Mph1103I ATGCAT 2 cut(s) 273, 531
MroNI GCCGGC 1 cut(s) 120
MspA1I CMGCKG 2 cut(s) 165, 365
MspI CCGG 2 cut(s) 121, 433
MspR9I CCNGG 3 cut(s) 312, 324, 434
Mva1269I GAATGC 1 cut(s) 273
MvaI CCWGG 2 cut(s) 312, 324
MvnI CGCG 2 cut(s) 78, 132
MwoI GCNNNNNNNGC 3 cut(s) 62, 81, 458
NaeI GCCGGC 1 cut(s) 122
NciI CCSGG 1 cut(s) 434
NdeI CATATG 1 cut(s) 99
NdeII GATC 2 cut(s) 358, 369
NgoMIV GCCGGC 1 cut(s) 120
NheI GCTAGC 1 cut(s) 116
NlaIII CATG 6 cut(s) 128, 254, 275, 479, 514, 533
NlaIV GGNNCC 1 cut(s) 159
NmuCI GTSAC 1 cut(s) 167
NsiI ATGCAT 2 cut(s) 273, 531
NspI RCATGY 2 cut(s) 128, 479
PaqCI CACCTGC 1 cut(s) 196
PctI GAATGC 1 cut(s) 273
PdiI GCCGGC 1 cut(s) 122
PfeI GAWTC 1 cut(s) 17
PfoI TCCNGGA 1 cut(s) 310
PkrI GCNGC 5 cut(s) 34, 37, 55, 67, 77
Psp6I CCWGG 2 cut(s) 310, 322
PspFI CCCAGC 1 cut(s) 340
PspGI CCWGG 2 cut(s) 310, 322
PspN4I GGNNCC 1 cut(s) 159
PvuII CAGCTG 1 cut(s) 365
RsaI GTAC 2 cut(s) 288, 381
RsaNI GTAC 2 cut(s) 287, 380
SatI GCNGC 5 cut(s) 33, 36, 54, 66, 76
Sau3AI GATC 2 cut(s) 358, 369
ScrFI CCNGG 3 cut(s) 312, 324, 434
SetI ASST 9 cut(s) 96, 114, 159, 190, 325, 346, 367, 400, 541
SexAI ACCWGGT 1 cut(s) 322
SfaNI GCATC 2 cut(s) 448, 516
SsiI CCGC 4 cut(s) 36, 76, 163, 422
SspMI CTAG 3 cut(s) 117, 399, 556
StyD4I CCNGG 3 cut(s) 310, 322, 432
TatI WGTACW 2 cut(s) 286, 379
TauI GCSGC 2 cut(s) 38, 78
TfiI GAWTC 1 cut(s) 17
TseFI GTSAC 1 cut(s) 167
TseI GCWGC 3 cut(s) 32, 53, 65
Tsp45I GTSAC 1 cut(s) 167
TspDTI ATGAA 3 cut(s) 86, 239, 527
XceI RCATGY 2 cut(s) 128, 479
XspI CTAG 3 cut(s) 117, 399, 556
Zsp2I ATGCAT 2 cut(s) 273, 531
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.