Rmu_sc0036064.1_g000001

salt tolerance-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0036064.1
OG0004172
Physical Location & Seq
Reverse (-)
1 .. 1435
1435 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0036064.1_g000001.1.cds

Sequence Viewer

Length: 417 bp
ctggcaactcccagtgcagttccccgctgtgatatttgtgaaaatgcacccgctttcttctattgcgagatagatgggagttccctttgtttgcaatgtgatatggttgttcatgttggaggtaaaagaacacacggaagatatctggtactgagacaaagagttgagtttccaggggataaacctagtagtaacggtgaagacccagcatcccaaccccccattgaccaaggtgagaccagaagagtacaacatcagcaaccaagaatgacaattggagagaatcatcaaaatcacagggcatctcctattcgtctagcagatgccaatgatgatgggcatgtaaagatggataataagttaattgatttgaatatgaagcctaatcggatgcatggacaagcttcaaataaagag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-B_box

Protein Analysis

139

Amino Acids

15.51

Weight (kDa)

6.71

Isoelectric Point (pI)

53.18

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 25, 51
AfaI GTAC 2 cut(s) 150, 249
AgsI TTSAA 2 cut(s) 373, 408
AjnI CCWGG 1 cut(s) 172
AluBI AGCT 1 cut(s) 404
AluI AGCT 1 cut(s) 404
Alw26I GTCTC 2 cut(s) 148, 230
AsuHPI GGTGA 2 cut(s) 209, 245
BbsI GAAGAC 1 cut(s) 207
BccI CCATC 3 cut(s) 68, 329, 343
BciT130I CCWGG 1 cut(s) 174
BcoDI GTCTC 2 cut(s) 148, 230
BfaI CTAG 2 cut(s) 186, 317
Bme1390I CCNGG 1 cut(s) 174
BmrFI CCNGG 1 cut(s) 174
BmrI ACTGGG 1 cut(s) 6
BmsI GCATC 4 cut(s) 218, 311, 313, 381
BmuI ACTGGG 1 cut(s) 6
BpiI GAAGAC 1 cut(s) 207
BsaI GGTCTC 1 cut(s) 230
BsaJI CCNNGG 2 cut(s) 173, 229
Bse1I ACTGG 1 cut(s) 12
Bse3DI GCAATG 1 cut(s) 101
BseBI CCWGG 1 cut(s) 174
BseDI CCNNGG 2 cut(s) 173, 229
BseGI GGATG 2 cut(s) 209, 396
BseMI GCAATG 1 cut(s) 101
BseMII CTCAG 1 cut(s) 143
BseNI ACTGG 1 cut(s) 12
BseYI CCCAGC 1 cut(s) 205
BsgI GTGCAG 1 cut(s) 36
BsmAI GTCTC 2 cut(s) 148, 230
Bso31I GGTCTC 1 cut(s) 230
BspACI CCGC 2 cut(s) 25, 51
BspCNI CTCAG 1 cut(s) 144
BspTNI GGTCTC 1 cut(s) 230
BsrDI GCAATG 1 cut(s) 101
BsrI ACTGG 1 cut(s) 12
BssECI CCNNGG 2 cut(s) 173, 229
BssT1I CCWWGG 1 cut(s) 229
Bst2UI CCWGG 1 cut(s) 174
Bst4CI ACNGT 1 cut(s) 197
Bst6I CTCTTC 1 cut(s) 238
BstDEI CTNAG 1 cut(s) 152
BstF5I GGATG 2 cut(s) 209, 396
BstMAI GTCTC 2 cut(s) 148, 230
BstNI CCWGG 1 cut(s) 174
BstNSI RCATGY 1 cut(s) 344
BstSCI CCNGG 1 cut(s) 172
BstV2I GAAGAC 1 cut(s) 207
BtsCI GGATG 2 cut(s) 209, 396
BtsIMutI CAGTG 1 cut(s) 19
Csp6I GTAC 2 cut(s) 149, 248
CviAII CATG 3 cut(s) 113, 341, 395
CviJI RGCY 2 cut(s) 382, 404
CviKI_1 RGCY 2 cut(s) 382, 404
CviQI GTAC 2 cut(s) 149, 248
DdeI CTNAG 1 cut(s) 152
Eam1104I CTCTTC 1 cut(s) 238
EarI CTCTTC 1 cut(s) 238
Eco130I CCWWGG 1 cut(s) 229
Eco31I GGTCTC 1 cut(s) 230
Eco32I GATATC 1 cut(s) 143
EcoRII CCWGG 1 cut(s) 172
EcoRV GATATC 1 cut(s) 143
EcoT14I CCWWGG 1 cut(s) 229
EcoT22I ATGCAT 1 cut(s) 396
ErhI CCWWGG 1 cut(s) 229
FaeI CATG 3 cut(s) 116, 344, 398
FaiI YATR 5 cut(s) 104, 114, 342, 377, 396
FatI CATG 3 cut(s) 112, 340, 394
FauI CCCGC 2 cut(s) 32, 58
FokI GGATG 2 cut(s) 196, 403
FspBI CTAG 2 cut(s) 186, 317
GsaI CCCAGC 1 cut(s) 209
Hin1II CATG 3 cut(s) 116, 344, 398
HindIII AAGCTT 1 cut(s) 402
HinfI GANTC 1 cut(s) 283
HphI GGTGA 2 cut(s) 209, 245
Hpy188I TCNGA 1 cut(s) 390
HpyCH4III ACNGT 1 cut(s) 197
HpyCH4V TGCA 4 cut(s) 17, 47, 94, 394
HpyF3I CTNAG 1 cut(s) 152
Hsp92II CATG 3 cut(s) 116, 344, 398
LpnPI CCDG 7 cut(s) 25, 131, 159, 186, 219, 253, 283
LweI GCATC 4 cut(s) 218, 311, 313, 381
MaeI CTAG 2 cut(s) 186, 317
MaeIII GTNAC 1 cut(s) 191
MboII GAAGA 4 cut(s) 49, 150, 212, 255
MfeI CAATTG 1 cut(s) 273
MluCI AATT 2 cut(s) 273, 363
MmeI TCCRAC 1 cut(s) 97
MnlI CCTC 1 cut(s) 113
Mph1103I ATGCAT 1 cut(s) 396
MseI TTAA 1 cut(s) 362
MspA1I CMGCKG 1 cut(s) 27
MspR9I CCNGG 1 cut(s) 174
MunI CAATTG 1 cut(s) 273
MvaI CCWGG 1 cut(s) 174
NlaIII CATG 3 cut(s) 116, 344, 398
NsiI ATGCAT 1 cut(s) 396
NspI RCATGY 1 cut(s) 344
PfeI GAWTC 1 cut(s) 283
Psp6I CCWGG 1 cut(s) 172
PspFI CCCAGC 1 cut(s) 205
PspGI CCWGG 1 cut(s) 172
RsaI GTAC 2 cut(s) 150, 249
RsaNI GTAC 2 cut(s) 149, 248
SaqAI TTAA 1 cut(s) 362
ScrFI CCNGG 1 cut(s) 174
SetI ASST 4 cut(s) 124, 187, 235, 406
SfaNI GCATC 4 cut(s) 218, 311, 313, 381
Sse9I AATT 2 cut(s) 273, 363
SsiI CCGC 2 cut(s) 25, 51
SspMI CTAG 2 cut(s) 186, 317
StyD4I CCNGG 1 cut(s) 172
StyI CCWWGG 1 cut(s) 229
TaaI ACNGT 1 cut(s) 197
TasI AATT 2 cut(s) 273, 363
TatI WGTACW 1 cut(s) 247
TfiI GAWTC 1 cut(s) 283
Tru1I TTAA 1 cut(s) 362
Tru9I TTAA 1 cut(s) 362
TscAI CASTG 1 cut(s) 19
TspDTI ATGAA 2 cut(s) 101, 392
TspGWI ACGGA 1 cut(s) 150
TspRI CASTG 1 cut(s) 19
XceI RCATGY 1 cut(s) 344
XspI CTAG 2 cut(s) 186, 317
Zsp2I ATGCAT 1 cut(s) 396
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.