Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0004172

Physical Location & Seq

Genomic Coordinates Reverse (-)

6697099 .. 6700974

Gene Structure 3876 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0083100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1065 bp

ATGAACAAGGGAAGCTTAGGCTCTAAGCTCAAGCTTACTCTTCCTCCTCCTGATGAAGATTCCATCAAGAAGTTCCTGACTCATAGTGGTACCTTTATGGATGGGGATCTGCTGGTGAATAGGGAAGGGGTTCGGATCGTCTCTCATAGAGAAGTTGAAGTTCCAGCCCCTATTCAAGCAGCAGACAATCAGATGATTTTAGCAGATCTCTACGTGGTTAAAGTCATTGGTAAAGGAAATGGTGGGGTTGTGCAGTTGGTTCAGCACAAATGGACTGGCCAGTTTTTTGCATTGAAGGTAATCCAAATGAATATTCAGGAGTCTATTCGCAAGCAGATTGCACAAGAATTGAAAATTAATCAATCATCACAATGTCCCTATATTGTTGTATGTTACCAATCCTTCTATGATAATGGTTGCATTTCAATTATCCTAGAGTACATGGATGGTGGATCTTTAGCAGATCTTCTGAGAAAAGTCAGATCAATTCCAGAGCCATATATTTCTGCTATGTGTAAGCAGGTGCTGCGCGGTTTGTTGTATCTTCATCATGAAAAACACATAATTCACAGGGACTTCAAACCCTCGAACTTGTTAATAAATCATAGAGGAGAAATTAAGATAACTGACTTTGGTGTCAGTGCAATAAAGGCAAACACCTCTGAACAGGCAAATACTTTTGTTGGCACATACAACTATATGTCGCCAGAGAGAATACAAGGTAACAGCTATAGCTACAAAAGTGACATTTGGAGCTTGGGCTTAGTACTACTGGAGTGTGCAACAGGTAAATTCCCATATACACCACCAGATCAAAGTGAAGGATGGGAAAACTTTTTTGAGCTTATGAGTGCTGTTGTTGACTTGCCACCACCTTCTGCACCTTCCGATCAGTTTTCTCCAGAGTTCTGCTCATTTATTTCTGCATGTGTACAGAAAGATCCTAAAAAGAGATTGTCAGCACATGATCTCCTAGTGCATCCTTTTATCAGCATGTACGACGACTTGAATATCGACCTTTCATCTTACTTCACTGAAGCAGGATCTCCACTTGCAACCTTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-B_box

Protein Analysis

354

Amino Acids

39.66

Weight (kDa)

6.07

Isoelectric Point (pI)

45.35

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	72 - 330	4.1e-72	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	73 - 324	3.2e-38	Protein tyrosine and serine/threonine kinase
Kinase-like	PF14531	174 - 281	2.3e-06	Kinase-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004172)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G21320 AT4G38960 AT4G38960 AT4G38960 AT4G38960 AT4G38960 AT4G38960
fragaria_vesca	FvH4_1g12110 FvH4_1g12110 FvH4_1g12110
malus_domestica	MD00G1039900.v1.1 MD02G1110700.v1.1 MD10G1063500.v1.1 MD15G1248300.v1.1
prunus_persica	Prupe.7G165700_v2.0.a1 Prupe.8G085000_v2.0.a1
pyrus_communis	pycom02g10660 pycom05g04650 pycom10g04900 pycom15g21870
rosa_chinensis	RchiOBHm_Chr2g0099771
rosa_laevigata	RLG00000016912
rosa_multiflora	Rmu_sc0008864.1_g000010 Rmu_sc0036064.1_g000001
rosa_roxburghii	Rroxscaffold_2G00142780
rosa_rugosa	Rorug02G0082900 Rorug02G0083000 Rorug02G0083100
rosa_samantha	Rh2AG132600 Rh2BG135400 Rh2CG136700 Rh2DG137200
rosa_wichuraiana	Rw2G010260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	511
AasI	GACNNNNNNGTC	1 cut(s)	635
Acc36I	ACCTGC	1 cut(s)	511
Acc65I	GGTACC	1 cut(s)	89
AccB1I	GGYRCC	1 cut(s)	89
AccII	CGCG	1 cut(s)	531
AciI	CCGC	1 cut(s)	531
AclWI	GGATC	5 cut(s)	114, 143, 460, 935, 1051
AcoI	YGGCCR	1 cut(s)	277
AcsI	RAATTY	1 cut(s)	791
AcuI	CTGAAG	1 cut(s)	1056
AfaI	GTAC	5 cut(s)	91, 440, 768, 933, 998
AgsI	TTSAA	7 cut(s)	158, 176, 295, 352, 426, 580, 1009
AjuI	GAANNNNNNNTTGG	2 cut(s)	297, 329
AluBI	AGCT	7 cut(s)	15, 28, 34, 729, 735, 756, 844
AluI	AGCT	7 cut(s)	15, 28, 34, 729, 735, 756, 844
Alw26I	GTCTC	1 cut(s)	145
AlwI	GGATC	5 cut(s)	114, 143, 460, 935, 1051
AlwNI	CAGNNNCTG	1 cut(s)	526
AoxI	GGCC	1 cut(s)	277
ApeKI	GCWGC	2 cut(s)	179, 526
ApoI	RAATTY	1 cut(s)	791
AseI	ATTAAT	1 cut(s)	357
Asp700I	GAANNNNTTC	1 cut(s)	129
Asp718I	GGTACC	1 cut(s)	89
AspLEI	GCGC	1 cut(s)	531
AsuHPI	GGTGA	1 cut(s)	127
BalI	TGGCCA	1 cut(s)	279
BanI	GGYRCC	1 cut(s)	89
BbvI	GCAGC	2 cut(s)	191, 513
BccI	CCATC	4 cut(s)	71, 95, 440, 819
BcoDI	GTCTC	1 cut(s)	145
BfaI	CTAG	2 cut(s)	434, 974
BfmI	CTRYAG	1 cut(s)	730
BfuAI	ACCTGC	1 cut(s)	511
BglII	AGATCT	2 cut(s)	205, 463
BisI	GCNGC	2 cut(s)	180, 527
BlsI	GCNGC	2 cut(s)	181, 528
BmcAI	AGTACT	1 cut(s)	768
BmiI	GGNNCC	1 cut(s)	91
BmsI	GCATC	1 cut(s)	988
BplI	GAGNNNNNCTC	2 cut(s)	896, 928
BpmI	CTGGAG	2 cut(s)	794, 885
Bpu10I	CCTNAGC	1 cut(s)	16
BpuEI	CTTGAG	1 cut(s)	14
BsaAI	YACGTR	1 cut(s)	214
BsaBI	GATNNNNATC	1 cut(s)	105
BsaXI	ACNNNNNCTCC	4 cut(s)	28, 58, 954, 984
Bse1I	ACTGG	3 cut(s)	280, 280, 777
Bse8I	GATNNNNATC	1 cut(s)	105
BseGI	GGATG	4 cut(s)	106, 451, 830, 979
BseJI	GATNNNNATC	1 cut(s)	105
BseMII	CTCAG	1 cut(s)	461
BseNI	ACTGG	3 cut(s)	280, 280, 777
BseRI	GAGGAG	2 cut(s)	36, 624
BseXI	GCAGC	2 cut(s)	191, 513
BsgI	GTGCAG	2 cut(s)	272, 864
Bsh1236I	CGCG	1 cut(s)	531
BshFI	GGCC	1 cut(s)	279
BshNI	GGYRCC	1 cut(s)	89
BslFI	GGGAC	2 cut(s)	360, 587
BsmAI	GTCTC	1 cut(s)	145
BsmBI	CGTCTC	1 cut(s)	145
BsmFI	GGGAC	2 cut(s)	360, 587
BsnI	GGCC	1 cut(s)	279
Bsp1407I	TGTACA	1 cut(s)	931
BspACI	CCGC	1 cut(s)	531
BspANI	GGCC	1 cut(s)	279
BspCNI	CTCAG	1 cut(s)	462
BspFNI	CGCG	1 cut(s)	531
BspHI	TCATGA	1 cut(s)	550
BspLI	GGNNCC	1 cut(s)	91
BspMI	ACCTGC	1 cut(s)	511
BspPI	GGATC	5 cut(s)	114, 143, 460, 935, 1051
BspT107I	GGYRCC	1 cut(s)	89
BsrGI	TGTACA	1 cut(s)	931
BsrI	ACTGG	3 cut(s)	280, 280, 777
Bst6I	CTCTTC	1 cut(s)	45
BstAPI	GCANNNNNTGC	1 cut(s)	526
BstAUI	TGTACA	1 cut(s)	931
BstBAI	YACGTR	1 cut(s)	214
BstC8I	GCNNGC	1 cut(s)	332
BstDEI	CTNAG	4 cut(s)	16, 24, 470, 763
BstF5I	GGATG	4 cut(s)	106, 451, 830, 979
BstFNI	CGCG	1 cut(s)	531
BstHHI	GCGC	1 cut(s)	531
BstMAI	GTCTC	1 cut(s)	145
BstMWI	GCNNNNNNNGC	2 cut(s)	526, 650
BstNSI	RCATGY	2 cut(s)	930, 997
BstSFI	CTRYAG	1 cut(s)	730
BstUI	CGCG	1 cut(s)	531
BstV1I	GCAGC	2 cut(s)	191, 513
BstX2I	RGATCY	6 cut(s)	106, 205, 452, 463, 940, 1043
BstYI	RGATCY	6 cut(s)	106, 205, 452, 463, 940, 1043
BsuRI	GGCC	1 cut(s)	279
BtsCI	GGATG	4 cut(s)	106, 451, 830, 979
BtsIMutI	CAGTG	2 cut(s)	646, 1032
BveI	ACCTGC	1 cut(s)	511
Cac8I	GCNNGC	1 cut(s)	332
CaiI	CAGNNNCTG	1 cut(s)	526
CciI	TCATGA	1 cut(s)	550
CfoI	GCGC	1 cut(s)	531
Csp6I	GTAC	5 cut(s)	90, 439, 767, 932, 997
CviAII	CATG	5 cut(s)	442, 551, 927, 965, 994
CviQI	GTAC	5 cut(s)	90, 439, 767, 932, 997
DdeI	CTNAG	4 cut(s)	16, 24, 470, 763
DrdI	GACNNNNNNGTC	1 cut(s)	635
DseDI	GACNNNNNNGTC	1 cut(s)	635
EaeI	YGGCCR	1 cut(s)	277
Eam1104I	CTCTTC	1 cut(s)	45
EarI	CTCTTC	1 cut(s)	45
Eco57I	CTGAAG	1 cut(s)	1056
Esp3I	CGTCTC	1 cut(s)	145
FaeI	CATG	5 cut(s)	445, 554, 930, 968, 997
FalI	AAGNNNNNCTT	1 cut(s)	31
FaqI	GGGAC	2 cut(s)	360, 587
FatI	CATG	5 cut(s)	441, 550, 926, 964, 993
Fnu4HI	GCNGC	2 cut(s)	180, 527
FokI	GGATG	4 cut(s)	113, 458, 837, 966
Fsp4HI	GCNGC	2 cut(s)	180, 527
FspBI	CTAG	2 cut(s)	434, 974
GlaI	GCGC	1 cut(s)	530
GluI	GCNGC	2 cut(s)	180, 527
GsuI	CTGGAG	2 cut(s)	794, 885
HaeIII	GGCC	1 cut(s)	279
HhaI	GCGC	1 cut(s)	531
Hin1II	CATG	5 cut(s)	445, 554, 930, 968, 997
Hin6I	GCGC	1 cut(s)	529
HinP1I	GCGC	1 cut(s)	529
HincII	GTYRAC	1 cut(s)	862
HindII	GTYRAC	1 cut(s)	862
HindIII	AAGCTT	2 cut(s)	13, 32
HinfI	GANTC	3 cut(s)	59, 79, 320
HphI	GGTGA	1 cut(s)	127
Hpy166II	GTNNAC	2 cut(s)	862, 932
Hpy188I	TCNGA	6 cut(s)	135, 192, 471, 482, 664, 889
Hpy188III	TCNNGA	7 cut(s)	50, 67, 76, 317, 491, 551, 902
Hpy8I	GTNNAC	2 cut(s)	862, 932
Hpy99I	CGWCG	1 cut(s)	1004
HpyAV	CCTTC	6 cut(s)	119, 289, 412, 815, 885, 894
HpyCH4IV	ACGT	1 cut(s)	213
HpyF10VI	GCNNNNNNNGC	2 cut(s)	526, 650
HpyF3I	CTNAG	4 cut(s)	16, 24, 470, 763
HpySE526I	ACGT	1 cut(s)	213
Hsp92II	CATG	5 cut(s)	445, 554, 930, 968, 997
HspAI	GCGC	1 cut(s)	529
KpnI	GGTACC	1 cut(s)	93
LmnI	GCTCC	1 cut(s)	753
Lsp1109I	GCAGC	2 cut(s)	191, 513
LweI	GCATC	1 cut(s)	988
MaeI	CTAG	2 cut(s)	434, 974
MaeII	ACGT	1 cut(s)	213
MaeIII	GTNAC	3 cut(s)	392, 722, 743
MboII	GAAGA	4 cut(s)	32, 68, 458, 536
MflI	RGATCY	6 cut(s)	106, 205, 452, 463, 940, 1043
MlsI	TGGCCA	1 cut(s)	279
MluCI	AATT	7 cut(s)	347, 354, 426, 486, 564, 615, 791
MluNI	TGGCCA	1 cut(s)	279
MlyI	GAGTC	2 cut(s)	73, 329
MnlI	CCTC	5 cut(s)	54, 57, 595, 602, 670
Mox20I	TGGCCA	1 cut(s)	279
MroXI	GAANNNNTTC	1 cut(s)	129
MscI	TGGCCA	1 cut(s)	279
MseI	TTAA	5 cut(s)	219, 357, 596, 618, 1063
MslI	CAYNNNNRTG	1 cut(s)	370
Msp20I	TGGCCA	1 cut(s)	279
MvnI	CGCG	1 cut(s)	531
MwoI	GCNNNNNNNGC	2 cut(s)	526, 650
NlaIII	CATG	5 cut(s)	445, 554, 930, 968, 997
NlaIV	GGNNCC	1 cut(s)	91
NmuCI	GTSAC	1 cut(s)	743
NspI	RCATGY	2 cut(s)	930, 997
PagI	TCATGA	1 cut(s)	550
PaqCI	CACCTGC	1 cut(s)	511
PdmI	GAANNNNTTC	1 cut(s)	129
PfeI	GAWTC	1 cut(s)	59
PkrI	GCNGC	2 cut(s)	181, 528
PleI	GAGTC	2 cut(s)	73, 328
PpsI	GAGTC	2 cut(s)	73, 328
Ppu21I	YACGTR	1 cut(s)	214
PshBI	ATTAAT	1 cut(s)	357
PspN4I	GGNNCC	1 cut(s)	91
PstNI	CAGNNNCTG	1 cut(s)	526
PsuI	RGATCY	6 cut(s)	106, 205, 452, 463, 940, 1043
RsaI	GTAC	5 cut(s)	91, 440, 768, 933, 998
RsaNI	GTAC	5 cut(s)	90, 439, 767, 932, 997
RseI	CAYNNNNRTG	1 cut(s)	370
SaqAI	TTAA	5 cut(s)	219, 357, 596, 618, 1063
SatI	GCNGC	2 cut(s)	180, 527
ScaI	AGTACT	1 cut(s)	768
SchI	GAGTC	2 cut(s)	73, 329
SfaNI	GCATC	1 cut(s)	988
SfcI	CTRYAG	1 cut(s)	730
SmiMI	CAYNNNNRTG	1 cut(s)	370
SmlI	CTYRAG	1 cut(s)	29
SmoI	CTYRAG	1 cut(s)	29
Sse9I	AATT	7 cut(s)	347, 354, 426, 486, 564, 615, 791
SsiI	CCGC	1 cut(s)	531
SspI	AATATT	1 cut(s)	313
SspMI	CTAG	2 cut(s)	434, 974
TaiI	ACGT	1 cut(s)	216
TaqI	TCGA	2 cut(s)	587, 1014
TasI	AATT	7 cut(s)	347, 354, 426, 486, 564, 615, 791
TatI	WGTACW	3 cut(s)	438, 766, 931
TfiI	GAWTC	1 cut(s)	59
Tru1I	TTAA	5 cut(s)	219, 357, 596, 618, 1063
Tru9I	TTAA	5 cut(s)	219, 357, 596, 618, 1063
TscAI	CASTG	2 cut(s)	646, 1039
TseFI	GTSAC	1 cut(s)	743
TseI	GCWGC	2 cut(s)	179, 526
Tsp45I	GTSAC	1 cut(s)	743
TspDTI	ATGAA	6 cut(s)	17, 69, 323, 536, 567, 1011
TspRI	CASTG	2 cut(s)	646, 1039
VspI	ATTAAT	1 cut(s)	357
XapI	RAATTY	1 cut(s)	791
XceI	RCATGY	2 cut(s)	930, 997
XmnI	GAANNNNTTC	1 cut(s)	129
XspI	CTAG	2 cut(s)	434, 974
ZrmI	AGTACT	1 cut(s)	768

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.