Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0004172

Physical Location & Seq

Genomic Coordinates Forward (+)

7404009 .. 7405985

Gene Structure 1977 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom02g10660.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 666 bp

ATGAGAACACTTTGTGATTCCTGTGAAGGCGCAGCCGCAATCGTGTTTTGCGCTGCCGACGAGGCTGCTCTTTGCCGCGCCTGCGACGAGAAGGTTCATATGTGCAATAAGCTTGCTAGCCGGCATGTTCGCGTTGGTCTTGCTACTCCAAGTGAAGTTCCCCGCTGTGACATTTGTGAAAATGCACCTGCTTTCTTTTATTGCGAGATAGATGGAAGTTCCCTCTGTTTGCAATGTGATATGATTGTTCATGTTGGAGGCAAAAGAATGCATGGAAGATATCTTGTACTGAGACAAAGAGTTGAGTTTCCAGGAGATAAACCTGGTAATAGTGATGACCCAGCTTCCCAACCCATTGATCCAGCTGAGATCAGAAGAGTACAACAACACCATCCACCTAGAATGACAATAGGAGAGAACCCGCAAAATCACCGGGTGTCTCCTATTCGTGCTTCAGATGCCAATGCCGATGGGCATGTAAAGATGGATAATAATTTGATTGATTTGAACATGAAGCCTCATCGGATGCATGGACAAGCTTCAAACAAAGAGGTACGAGTGCTTTCATTTTTTAGTACGATCGGCTTGATCCTAGCTCTGTTTTTGTTTTACAGGACTAGTATCGGCATATCTGGAATCATCGGCTCGAGCAGATTACGTCGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-B_box

Protein Analysis

222

Amino Acids

24.46

Weight (kDa)

8.32

Isoelectric Point (pI)

51.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004172)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G21320 AT4G38960 AT4G38960 AT4G38960 AT4G38960 AT4G38960 AT4G38960
fragaria_vesca	FvH4_1g12110 FvH4_1g12110 FvH4_1g12110
malus_domestica	MD00G1039900.v1.1 MD02G1110700.v1.1 MD10G1063500.v1.1 MD15G1248300.v1.1
prunus_persica	Prupe.7G165700_v2.0.a1 Prupe.8G085000_v2.0.a1
pyrus_communis	pycom02g10660 pycom05g04650 pycom10g04900 pycom15g21870
rosa_chinensis	RchiOBHm_Chr2g0099771
rosa_laevigata	RLG00000016912
rosa_multiflora	Rmu_sc0008864.1_g000010 Rmu_sc0036064.1_g000001
rosa_roxburghii	Rroxscaffold_2G00142780
rosa_rugosa	Rorug02G0082900 Rorug02G0083000 Rorug02G0083100
rosa_samantha	Rh2AG132600 Rh2BG135400 Rh2CG136700 Rh2DG137200
rosa_wichuraiana	Rw2G010260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	196
Acc36I	ACCTGC	1 cut(s)	196
AccII	CGCG	2 cut(s)	78, 132
AciI	CCGC	4 cut(s)	36, 76, 163, 422
AclWI	GGATC	2 cut(s)	353, 583
AcuI	CTGAAG	1 cut(s)	438
AdeI	CACNNNGTG	2 cut(s)	14, 436
AfaI	GTAC	4 cut(s)	288, 381, 555, 577
AgsI	TTSAA	2 cut(s)	508, 543
AhlI	ACTAGT	1 cut(s)	617
AjnI	CCWGG	2 cut(s)	310, 322
AluBI	AGCT	5 cut(s)	112, 344, 365, 539, 596
AluI	AGCT	5 cut(s)	112, 344, 365, 539, 596
Alw26I	GTCTC	2 cut(s)	286, 444
AlwI	GGATC	2 cut(s)	353, 583
Ama87I	CYCGRG	1 cut(s)	646
ApeKI	GCWGC	3 cut(s)	32, 53, 65
AspLEI	GCGC	3 cut(s)	32, 53, 80
AsuC2I	CCSGG	1 cut(s)	434
AsuHPI	GGTGA	1 cut(s)	422
AsuNHI	GCTAGC	1 cut(s)	116
AvaI	CYCGRG	1 cut(s)	646
BbvI	GCAGC	3 cut(s)	40, 44, 52
BccI	CCATC	4 cut(s)	206, 399, 464, 478
BcgI	CGANNNNNNTGC	2 cut(s)	47, 81
BciT130I	CCWGG	2 cut(s)	312, 324
BcnI	CCSGG	1 cut(s)	434
BcoDI	GTCTC	2 cut(s)	286, 444
BcuI	ACTAGT	1 cut(s)	617
BfaI	CTAG	5 cut(s)	117, 399, 593, 618, 664
BfuAI	ACCTGC	1 cut(s)	196
BglI	GCCNNNNNGGC	1 cut(s)	62
BisI	GCNGC	5 cut(s)	33, 36, 54, 66, 76
BlsI	GCNGC	5 cut(s)	34, 37, 55, 67, 77
Bme1390I	CCNGG	3 cut(s)	312, 324, 434
BmeT110I	CYCGRG	1 cut(s)	646
BmrFI	CCNGG	3 cut(s)	312, 324, 434
BmsI	GCATC	2 cut(s)	448, 516
BmtI	GCTAGC	1 cut(s)	120
BpuMI	CCSGG	1 cut(s)	434
Bse118I	RCCGGY	1 cut(s)	120
Bse3DI	GCAATG	1 cut(s)	239
BseBI	CCWGG	2 cut(s)	312, 324
BseGI	GGATG	2 cut(s)	391, 531
BseMI	GCAATG	1 cut(s)	239
BseMII	CTCAG	2 cut(s)	281, 357
BseXI	GCAGC	3 cut(s)	40, 44, 52
BseYI	CCCAGC	1 cut(s)	340
Bsh1236I	CGCG	2 cut(s)	78, 132
Bsh1285I	CGRYCG	1 cut(s)	582
BsiEI	CGRYCG	1 cut(s)	582
BsiHKCI	CYCGRG	1 cut(s)	646
BsiSI	CCGG	2 cut(s)	121, 433
BsmAI	GTCTC	2 cut(s)	286, 444
BsmI	GAATGC	1 cut(s)	273
BsoBI	CYCGRG	1 cut(s)	646
Bsp143I	GATC	4 cut(s)	358, 369, 579, 588
BspACI	CCGC	4 cut(s)	36, 76, 163, 422
BspCNI	CTCAG	2 cut(s)	282, 358
BspFNI	CGCG	2 cut(s)	78, 132
BspMI	ACCTGC	1 cut(s)	196
BspOI	GCTAGC	1 cut(s)	120
BspPI	GGATC	2 cut(s)	353, 583
BsrDI	GCAATG	1 cut(s)	239
BsrFI	RCCGGY	1 cut(s)	120
BssAI	RCCGGY	1 cut(s)	120
BssMI	GATC	4 cut(s)	358, 369, 579, 588
Bst2UI	CCWGG	2 cut(s)	312, 324
Bst6I	CTCTTC	1 cut(s)	370
BstC8I	GCNNGC	4 cut(s)	82, 114, 118, 122
BstDEI	CTNAG	2 cut(s)	290, 366
BstF5I	GGATG	2 cut(s)	391, 531
BstFNI	CGCG	2 cut(s)	78, 132
BstHHI	GCGC	3 cut(s)	32, 53, 80
BstKTI	GATC	4 cut(s)	361, 372, 582, 591
BstMAI	GTCTC	2 cut(s)	286, 444
BstMBI	GATC	4 cut(s)	358, 369, 579, 588
BstMCI	CGRYCG	1 cut(s)	582
BstMWI	GCNNNNNNNGC	3 cut(s)	62, 81, 458
BstNI	CCWGG	2 cut(s)	312, 324
BstNSI	RCATGY	2 cut(s)	128, 479
BstSCI	CCNGG	3 cut(s)	310, 322, 432
BstUI	CGCG	2 cut(s)	78, 132
BstV1I	GCAGC	3 cut(s)	40, 44, 52
BtsCI	GGATG	2 cut(s)	391, 531
BveI	ACCTGC	1 cut(s)	196
Cac8I	GCNNGC	4 cut(s)	82, 114, 118, 122
CfoI	GCGC	3 cut(s)	32, 53, 80
Cfr10I	RCCGGY	1 cut(s)	120
CsiI	ACCWGGT	1 cut(s)	322
Csp6I	GTAC	4 cut(s)	287, 380, 554, 576
CviAII	CATG	6 cut(s)	125, 251, 272, 476, 511, 530
CviQI	GTAC	4 cut(s)	287, 380, 554, 576
DdeI	CTNAG	2 cut(s)	290, 366
DpnI	GATC	4 cut(s)	360, 371, 581, 590
DpnII	GATC	4 cut(s)	358, 369, 579, 588
DraIII	CACNNNGTG	2 cut(s)	14, 436
Eam1104I	CTCTTC	1 cut(s)	370
EarI	CTCTTC	1 cut(s)	370
Eco32I	GATATC	1 cut(s)	281
Eco57I	CTGAAG	1 cut(s)	438
Eco88I	CYCGRG	1 cut(s)	646
EcoRII	CCWGG	2 cut(s)	310, 322
EcoRV	GATATC	1 cut(s)	281
EcoT22I	ATGCAT	2 cut(s)	273, 531
FaeI	CATG	6 cut(s)	128, 254, 275, 479, 514, 533
FatI	CATG	6 cut(s)	124, 250, 271, 475, 510, 529
FauI	CCCGC	2 cut(s)	170, 429
FauNDI	CATATG	1 cut(s)	99
Fnu4HI	GCNGC	5 cut(s)	33, 36, 54, 66, 76
FokI	GGATG	2 cut(s)	378, 538
Fsp4HI	GCNGC	5 cut(s)	33, 36, 54, 66, 76
FspBI	CTAG	5 cut(s)	117, 399, 593, 618, 664
GlaI	GCGC	3 cut(s)	31, 52, 79
GluI	GCNGC	5 cut(s)	33, 36, 54, 66, 76
GsaI	CCCAGC	1 cut(s)	344
HapII	CCGG	2 cut(s)	121, 433
HhaI	GCGC	3 cut(s)	32, 53, 80
Hin1II	CATG	6 cut(s)	128, 254, 275, 479, 514, 533
Hin6I	GCGC	3 cut(s)	30, 51, 78
HinP1I	GCGC	3 cut(s)	30, 51, 78
HindIII	AAGCTT	2 cut(s)	110, 537
HinfI	GANTC	2 cut(s)	17, 636
HpaII	CCGG	2 cut(s)	121, 433
HphI	GGTGA	1 cut(s)	422
Hpy188I	TCNGA	3 cut(s)	374, 457, 525
Hpy188III	TCNNGA	1 cut(s)	633
Hpy99I	CGWCG	3 cut(s)	62, 89, 663
HpyAV	CCTTC	2 cut(s)	20, 85
HpyCH4IV	ACGT	1 cut(s)	658
HpyCH4V	TGCA	5 cut(s)	105, 185, 232, 271, 529
HpyF10VI	GCNNNNNNNGC	3 cut(s)	62, 81, 458
HpyF3I	CTNAG	2 cut(s)	290, 366
HpySE526I	ACGT	1 cut(s)	658
Hsp92II	CATG	6 cut(s)	128, 254, 275, 479, 514, 533
HspAI	GCGC	3 cut(s)	30, 51, 78
KroI	GCCGGC	1 cut(s)	120
KroNI	GCCGGC	1 cut(s)	122
Kzo9I	GATC	4 cut(s)	358, 369, 579, 588
Lsp1109I	GCAGC	3 cut(s)	40, 44, 52
LweI	GCATC	2 cut(s)	448, 516
MabI	ACCWGGT	1 cut(s)	322
MaeI	CTAG	5 cut(s)	117, 399, 593, 618, 664
MaeII	ACGT	1 cut(s)	658
MaeIII	GTNAC	1 cut(s)	167
MalI	GATC	4 cut(s)	360, 371, 581, 590
MboI	GATC	4 cut(s)	358, 369, 579, 588
MboII	GAAGA	2 cut(s)	288, 387
MluCI	AATT	1 cut(s)	493
MmeI	TCCRAC	1 cut(s)	235
MnlI	CCTC	5 cut(s)	55, 233, 251, 528, 544
Mph1103I	ATGCAT	2 cut(s)	273, 531
MroNI	GCCGGC	1 cut(s)	120
MspA1I	CMGCKG	2 cut(s)	165, 365
MspI	CCGG	2 cut(s)	121, 433
MspR9I	CCNGG	3 cut(s)	312, 324, 434
Mva1269I	GAATGC	1 cut(s)	273
MvaI	CCWGG	2 cut(s)	312, 324
MvnI	CGCG	2 cut(s)	78, 132
MwoI	GCNNNNNNNGC	3 cut(s)	62, 81, 458
NaeI	GCCGGC	1 cut(s)	122
NciI	CCSGG	1 cut(s)	434
NdeI	CATATG	1 cut(s)	99
NdeII	GATC	4 cut(s)	358, 369, 579, 588
NgoMIV	GCCGGC	1 cut(s)	120
NheI	GCTAGC	1 cut(s)	116
NlaIII	CATG	6 cut(s)	128, 254, 275, 479, 514, 533
NmuCI	GTSAC	1 cut(s)	167
NsiI	ATGCAT	2 cut(s)	273, 531
NspI	RCATGY	2 cut(s)	128, 479
PaeR7I	CTCGAG	1 cut(s)	646
PaqCI	CACCTGC	1 cut(s)	196
PctI	GAATGC	1 cut(s)	273
PdiI	GCCGGC	1 cut(s)	122
PfeI	GAWTC	2 cut(s)	17, 636
PfoI	TCCNGGA	1 cut(s)	310
PkrI	GCNGC	5 cut(s)	34, 37, 55, 67, 77
Ple19I	CGATCG	1 cut(s)	582
Psp6I	CCWGG	2 cut(s)	310, 322
PspFI	CCCAGC	1 cut(s)	340
PspGI	CCWGG	2 cut(s)	310, 322
PspXI	VCTCGAGB	1 cut(s)	646
PvuI	CGATCG	1 cut(s)	582
PvuII	CAGCTG	1 cut(s)	365
RsaI	GTAC	4 cut(s)	288, 381, 555, 577
RsaNI	GTAC	4 cut(s)	287, 380, 554, 576
SatI	GCNGC	5 cut(s)	33, 36, 54, 66, 76
Sau3AI	GATC	4 cut(s)	358, 369, 579, 588
ScrFI	CCNGG	3 cut(s)	312, 324, 434
SexAI	ACCWGGT	1 cut(s)	322
SfaNI	GCATC	2 cut(s)	448, 516
Sfr274I	CTCGAG	1 cut(s)	646
SlaI	CTCGAG	1 cut(s)	646
SmlI	CTYRAG	1 cut(s)	646
SmoI	CTYRAG	1 cut(s)	646
SpeI	ACTAGT	1 cut(s)	617
Sse9I	AATT	1 cut(s)	493
SsiI	CCGC	4 cut(s)	36, 76, 163, 422
SspMI	CTAG	5 cut(s)	117, 399, 593, 618, 664
StyD4I	CCNGG	3 cut(s)	310, 322, 432
TaiI	ACGT	1 cut(s)	661
TaqI	TCGA	1 cut(s)	647
TasI	AATT	1 cut(s)	493
TatI	WGTACW	2 cut(s)	286, 379
TauI	GCSGC	2 cut(s)	38, 78
TfiI	GAWTC	2 cut(s)	17, 636
TseFI	GTSAC	1 cut(s)	167
TseI	GCWGC	3 cut(s)	32, 53, 65
Tsp45I	GTSAC	1 cut(s)	167
TspDTI	ATGAA	4 cut(s)	86, 239, 527, 555
XceI	RCATGY	2 cut(s)	128, 479
XhoI	CTCGAG	1 cut(s)	646
XspI	CTAG	5 cut(s)	117, 399, 593, 618, 664
Zsp2I	ATGCAT	2 cut(s)	273, 531

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.