AT2G21660

Glycine-rich RNA-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0004608
Physical Location & Seq
Reverse (-)
9265084 .. 9266557
1474 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G21660.2

Sequence Viewer

Length: 531 bp
ATGGCGTCCGGTGATGTTGAGTATCGGTGCTTCGTTGGAGGTCTAGCATGGGCCACTGATGACAGAGCTCTTGAGACTGCCTTCGCTCAATACGGCGACGTTATTGATTCCAAGATCATTAACGATCGTGAGACTGGAAGATCAAGGGGATTCGGATTCGTCACCTTCAAGGATGAGAAAGCCATGAAGGATGCGATTGAGGGAATGAACGGACAAGATCTCGATGGCCGTAGCATCACTGTTAACGAGGCTCAGTCACGAGGAAGCGGTGGCGGCGGAGGCCACCGTGGAGGTGGTGGCGGTGGATACCGCAGCGGCGGTGGTGGAGGTTACTCCGGTGGAGGTGGTAGCTACGGAGGTGGCGGCGGTAGACGCGAGGGTGGAGGAGGATACAGCGGCGGCGGCGGCGGTTACTCCTCAAGAGGTGGTGGTGGCGGAAGCTACGGTGGTGGAAGACGTGAGGGAGGAGGAGGATACGGTGGTGGTGAAGGAGGAGGTTACGGAGGAAGCGGTGGTGGTGGAGGATGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000375 GO:0000377 GO:0000380 GO:0000398 GO:0001101 GO:0002376 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003697 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005777 GO:0005829 GO:0005911 GO:0006139 GO:0006396 GO:0006397 GO:0006403 GO:0006405 GO:0006406 GO:0006611 GO:0006725 GO:0006807 GO:0006810 GO:0006886 GO:0006913 GO:0006950 GO:0006952 GO:0006955 GO:0006970 GO:0006996 GO:0007275 GO:0007623 GO:0008104 GO:0008150 GO:0008152 GO:0008380 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009506 GO:0009507 GO:0009536 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009735 GO:0009791 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010043 GO:0010119 GO:0010228 GO:0010467 GO:0010501 GO:0015031 GO:0015833 GO:0015931 GO:0016043 GO:0016070 GO:0016071 GO:0022414 GO:0030054 GO:0031503 GO:0032392 GO:0032501 GO:0032502 GO:0032508 GO:0033036 GO:0034613 GO:0034641 GO:0042221 GO:0042579 GO:0042886 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0045087 GO:0045184 GO:0046483 GO:0046686 GO:0046907 GO:0048046 GO:0048511 GO:0048608 GO:0048731 GO:0048856 GO:0050657 GO:0050658 GO:0050789 GO:0050794 GO:0050896 GO:0051028 GO:0051168 GO:0051169 GO:0051179 GO:0051234 GO:0051236 GO:0051276 GO:0051641 GO:0051649 GO:0055044 GO:0061458 GO:0065007 GO:0070727 GO:0071103 GO:0071166 GO:0071426 GO:0071427 GO:0071702 GO:0071704 GO:0071705 GO:0071840 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1901700
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RRM_1

Protein Analysis

176

Amino Acids

16.89

Weight (kDa)

5.86

Isoelectric Point (pI)

54.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_1 PF00076 11 - 79 6.4e-22 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 370
AccII CGCG 1 cut(s) 375
AcoI YGGCCR 1 cut(s) 226
AcyI GRCGYC 1 cut(s) 5
AgsI TTSAA 1 cut(s) 169
AjiI CACGTC 1 cut(s) 458
AluBI AGCT 3 cut(s) 68, 351, 441
AluI AGCT 3 cut(s) 68, 351, 441
Alw21I GWGCWC 1 cut(s) 70
Alw26I GTCTC 2 cut(s) 68, 125
AoxI GGCC 3 cut(s) 51, 226, 280
ApeKI GCWGC 1 cut(s) 312
AspS9I GGNCC 1 cut(s) 51
AsuHPI GGTGA 3 cut(s) 23, 154, 497
BaeI ACNNNNGTAYC 2 cut(s) 466, 499
BanII GRGCYC 1 cut(s) 70
BarI GAAGNNNNNNTAC 2 cut(s) 14, 46
BauI CACGAG 1 cut(s) 258
BbsI GAAGAC 1 cut(s) 460
Bbv12I GWGCWC 1 cut(s) 70
BbvI GCAGC 1 cut(s) 324
BccI CCATC 2 cut(s) 218, 519
BceAI ACGGC 2 cut(s) 109, 213
BciVI GTATCC 3 cut(s) 299, 383, 467
BcoDI GTCTC 2 cut(s) 68, 125
BfaI CTAG 1 cut(s) 44
BfuI GTATCC 3 cut(s) 299, 383, 467
BglII AGATCT 1 cut(s) 217
BisI GCNGC 8 cut(s) 274, 313, 316, 364, 397, 400, 403, 406
BlsI GCNGC 8 cut(s) 275, 314, 317, 365, 398, 401, 404, 407
BmgBI CACGTC 1 cut(s) 458
BmgT120I GGNCC 1 cut(s) 51
BmsI GCATC 2 cut(s) 181, 243
BpiI GAAGAC 1 cut(s) 460
BpuEI CTTGAG 2 cut(s) 92, 403
BsaHI GRCGYC 1 cut(s) 5
BsaJI CCNNGG 1 cut(s) 286
BsaWI WCCGGW 2 cut(s) 8, 335
Bse1I ACTGG 1 cut(s) 139
BseDI CCNNGG 1 cut(s) 286
BseGI GGATG 3 cut(s) 178, 196, 530
BseMII CTCAG 1 cut(s) 266
BseNI ACTGG 1 cut(s) 139
BseRI GAGGAG 5 cut(s) 399, 406, 480, 483, 507
BseXI GCAGC 1 cut(s) 324
Bsh1236I CGCG 1 cut(s) 375
Bsh1285I CGRYCG 1 cut(s) 127
BshFI GGCC 3 cut(s) 53, 228, 282
BsiEI CGRYCG 1 cut(s) 127
BsiHKAI GWGCWC 1 cut(s) 70
BsiSI CCGG 2 cut(s) 9, 336
BsmAI GTCTC 2 cut(s) 68, 125
BsnI GGCC 3 cut(s) 53, 228, 282
Bsp1286I GDGCHC 1 cut(s) 70
Bsp143I GATC 4 cut(s) 114, 124, 140, 217
BspANI GGCC 3 cut(s) 53, 228, 282
BspCNI CTCAG 1 cut(s) 265
BspFNI CGCG 1 cut(s) 375
BsrI ACTGG 1 cut(s) 139
BssECI CCNNGG 1 cut(s) 286
BssMI GATC 4 cut(s) 114, 124, 140, 217
BssNI GRCGYC 1 cut(s) 5
BssSI CACGAG 1 cut(s) 258
Bst2BI CACGAG 1 cut(s) 258
Bst4CI ACNGT 4 cut(s) 241, 287, 446, 479
BstACI GRCGYC 1 cut(s) 5
BstDEI CTNAG 1 cut(s) 252
BstDSI CCRYGG 1 cut(s) 286
BstF5I GGATG 3 cut(s) 178, 196, 530
BstFNI CGCG 1 cut(s) 375
BstKTI GATC 4 cut(s) 117, 127, 143, 220
BstMAI GTCTC 2 cut(s) 68, 125
BstMBI GATC 4 cut(s) 114, 124, 140, 217
BstMCI CGRYCG 1 cut(s) 127
BstMWI GCNNNNNNNGC 5 cut(s) 273, 279, 372, 402, 405
BstUI CGCG 1 cut(s) 375
BstV1I GCAGC 1 cut(s) 324
BstV2I GAAGAC 1 cut(s) 460
BstX2I RGATCY 1 cut(s) 217
BstYI RGATCY 1 cut(s) 217
BsuI GTATCC 3 cut(s) 299, 383, 467
BsuRI GGCC 3 cut(s) 53, 228, 282
BtgI CCRYGG 1 cut(s) 286
BtrI CACGTC 1 cut(s) 458
BtsCI GGATG 3 cut(s) 178, 196, 530
BtsIMutI CAGTG 2 cut(s) 54, 237
Cfr13I GGNCC 1 cut(s) 51
CseI GACGC 1 cut(s) 381
CviAII CATG 2 cut(s) 48, 184
CviJI RGCY 8 cut(s) 53, 68, 182, 228, 251, 282, 351, 441
CviKI_1 RGCY 8 cut(s) 53, 68, 182, 228, 251, 282, 351, 441
DdeI CTNAG 1 cut(s) 252
DpnI GATC 4 cut(s) 116, 126, 142, 219
DpnII GATC 4 cut(s) 114, 124, 140, 217
EaeI YGGCCR 1 cut(s) 226
EciI GGCGGA 2 cut(s) 291, 450
Ecl136II GAGCTC 1 cut(s) 68
Eco24I GRGCYC 1 cut(s) 70
Eco53kI GAGCTC 1 cut(s) 68
EcoICRI GAGCTC 1 cut(s) 68
EcoT38I GRGCYC 1 cut(s) 70
FaeI CATG 2 cut(s) 51, 187
FaiI YATR 2 cut(s) 49, 185
FatI CATG 2 cut(s) 47, 183
FblI GTMKAC 1 cut(s) 370
Fnu4HI GCNGC 8 cut(s) 274, 313, 316, 364, 397, 400, 403, 406
FokI GGATG 2 cut(s) 185, 203
FriOI GRGCYC 1 cut(s) 70
Fsp4HI GCNGC 8 cut(s) 274, 313, 316, 364, 397, 400, 403, 406
FspBI CTAG 1 cut(s) 44
GluI GCNGC 8 cut(s) 274, 313, 316, 364, 397, 400, 403, 406
HaeIII GGCC 3 cut(s) 53, 228, 282
HapII CCGG 2 cut(s) 9, 336
HgaI GACGC 1 cut(s) 381
Hin1I GRCGYC 1 cut(s) 5
Hin1II CATG 2 cut(s) 51, 187
HincII GTYRAC 1 cut(s) 244
HindII GTYRAC 1 cut(s) 244
HinfI GANTC 3 cut(s) 107, 150, 156
HpaI GTTAAC 1 cut(s) 244
HpaII CCGG 2 cut(s) 9, 336
HphI GGTGA 3 cut(s) 23, 154, 497
Hpy166II GTNNAC 2 cut(s) 244, 371
Hpy188I TCNGA 1 cut(s) 155
Hpy188III TCNNGA 5 cut(s) 71, 128, 221, 258, 420
Hpy8I GTNNAC 2 cut(s) 244, 371
Hpy99I CGWCG 1 cut(s) 101
HpyAV CCTTC 4 cut(s) 91, 175, 181, 482
HpyCH4III ACNGT 4 cut(s) 241, 287, 446, 479
HpyCH4IV ACGT 2 cut(s) 99, 457
HpyF10VI GCNNNNNNNGC 5 cut(s) 273, 279, 372, 402, 405
HpyF3I CTNAG 1 cut(s) 252
HpySE526I ACGT 2 cut(s) 99, 457
Hsp92I GRCGYC 1 cut(s) 5
Hsp92II CATG 2 cut(s) 51, 187
KspAI GTTAAC 1 cut(s) 244
Kzo9I GATC 4 cut(s) 114, 124, 140, 217
LpnPI CCDG 3 cut(s) 22, 120, 349
Lsp1109I GCAGC 1 cut(s) 324
LweI GCATC 2 cut(s) 181, 243
MaeI CTAG 1 cut(s) 44
MaeII ACGT 2 cut(s) 99, 457
MaeIII GTNAC 5 cut(s) 160, 255, 329, 410, 497
MalI GATC 4 cut(s) 116, 126, 142, 219
MboI GATC 4 cut(s) 114, 124, 140, 217
MboII GAAGA 2 cut(s) 150, 465
MflI RGATCY 1 cut(s) 217
MhlI GDGCHC 1 cut(s) 70
MmeI TCCRAC 1 cut(s) 16
MseI TTAA 2 cut(s) 120, 243
MspA1I CMGCKG 2 cut(s) 315, 396
MspI CCGG 2 cut(s) 9, 336
MvnI CGCG 1 cut(s) 375
MwoI GCNNNNNNNGC 5 cut(s) 273, 279, 372, 402, 405
NdeII GATC 4 cut(s) 114, 124, 140, 217
NlaIII CATG 2 cut(s) 51, 187
NmuCI GTSAC 2 cut(s) 160, 255
PfeI GAWTC 3 cut(s) 107, 150, 156
PkrI GCNGC 8 cut(s) 275, 314, 317, 365, 398, 401, 404, 407
Ple19I CGATCG 1 cut(s) 127
Psp124BI GAGCTC 1 cut(s) 70
PspPI GGNCC 1 cut(s) 51
PsuI RGATCY 1 cut(s) 217
PvuI CGATCG 1 cut(s) 127
SacI GAGCTC 1 cut(s) 70
SaqAI TTAA 2 cut(s) 120, 243
SatI GCNGC 8 cut(s) 274, 313, 316, 364, 397, 400, 403, 406
Sau3AI GATC 4 cut(s) 114, 124, 140, 217
Sau96I GGNCC 1 cut(s) 51
SduI GDGCHC 1 cut(s) 70
SfaNI GCATC 2 cut(s) 181, 243
SmlI CTYRAG 2 cut(s) 71, 418
SmoI CTYRAG 2 cut(s) 71, 418
SspMI CTAG 1 cut(s) 44
SstI GAGCTC 1 cut(s) 70
TaaI ACNGT 4 cut(s) 241, 287, 446, 479
TaiI ACGT 2 cut(s) 102, 460
TaqI TCGA 1 cut(s) 222
TauI GCSGC 7 cut(s) 276, 318, 366, 399, 402, 405, 408
TfiI GAWTC 3 cut(s) 107, 150, 156
Tru1I TTAA 2 cut(s) 120, 243
Tru9I TTAA 2 cut(s) 120, 243
TscAI CASTG 2 cut(s) 61, 244
TseFI GTSAC 2 cut(s) 160, 255
TseI GCWGC 1 cut(s) 312
Tsp45I GTSAC 2 cut(s) 160, 255
TspDTI ATGAA 2 cut(s) 200, 221
TspGWI ACGGA 3 cut(s) 225, 369, 516
TspRI CASTG 2 cut(s) 61, 244
XcmI CCANNNNNNNNNTGG 1 cut(s) 290
XmiI GTMKAC 1 cut(s) 370
XspI CTAG 1 cut(s) 44
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.