Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000176

Orthogroup ID

OG0004608

Physical Location & Seq

Genomic Coordinates Forward (+)

1701699 .. 1702833

Gene Structure 1135 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_176G00431830.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 528 bp

ATGGCCTCTGCCGAGATCGAGTTCCGTTGCTTCGTCGGAGGGCTCGCCTGGGCCACCGACAACGAGGCGCTCGAAAGGGCCTTTGCTCCTTTTGGCGAGATCATCGAATCGAAGATCATCAACGACCGCGAGACCGGAAGGTCAAGGGGTTTCGGATTCGTCACCTTCAGCAACGAGAAGGCCATGAGGGACGCGATCGAAGGCATGAACGGCCAGGATCTCGACGGCCGTAACATCACCGTCAACGAGGCTCAGTCCCGCGGAAGCGGTGGCGGAGGCGGCGGTGGTGGATACGGTGGCAGCCGGGGAGGCGGTGGCTACGGTGGTGGTGGTGGCGGTTACGGTGGTCGTCGTGAGGGTGGAGGCGGTGGCTACGGTAGTGGCGGTGGAGGTTATGGCGGTGGTGGCCGTCGTGAAGGTGGAGGCGGTGGATACAGCCGTGGTGGTGGAAGCTATGGAAGCGGCGGCGGTGGCTATGGAGGTGGCGGCCGGGACCGTGGATCTGACGGCGGCAGCTGGAGGAGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

RRM_1

Protein Analysis

175

Amino Acids

17.06

Weight (kDa)

6.35

Isoelectric Point (pI)

61.5

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	11 - 80	3.1e-22	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004608)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G21660 AT2G21660
fragaria_vesca	FvH4_2g08880 FvH4_2g08880 FvH4_2g08880 FvH4_2g08880
malus_domestica	MD10G1075500.v1.1
prunus_persica	Prupe.1G176300_v2.0.a1 Prupe.2G011900_v2.0.a1 Prupe.3G163600_v2.0.a1 Prupe.5G141500_v2.0.a1 Prupe.7G178900_v2.0.a1 Prupe.8G096400_v2.0.a1 Prupe.8G096400_v2.0.a1 Prupe.8G096400_v2.0.a1 Prupe.8G096400_v2.0.a1 Prupe.8G096400_v2.0.a1 Prupe.8G096400_v2.0.a1 Prupe.8G096400_v2.0.a1
pyrus_communis	pycom05g05700 pycom10g05900
rosa_chinensis	RchiOBHm_Chr6g0264491 RchiOBHm_Chr7g0233551
rosa_multiflora	Rmu_sc0004946.1_g000027
rosa_roxburghii	Rroxscaffold_176G00431830
rosa_rugosa	Rorug06G0013300
rosa_samantha	Rh6AG132700 Rh6BG130100 Rh6CG128400 Rh6DG115500
rosa_wichuraiana	Rw0G020850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	139
AccII	CGCG	3 cut(s)	129, 194, 261
AclWI	GGATC	2 cut(s)	225, 508
AcoI	YGGCCR	4 cut(s)	211, 226, 406, 487
AcuI	CTGAAG	1 cut(s)	151
AjnI	CCWGG	2 cut(s)	47, 213
AluBI	AGCT	2 cut(s)	453, 516
AluI	AGCT	2 cut(s)	453, 516
Alw26I	GTCTC	1 cut(s)	125
AlwI	GGATC	2 cut(s)	225, 508
AoxI	GGCC	8 cut(s)	3, 51, 78, 180, 211, 226, 406, 487
ApeKI	GCWGC	2 cut(s)	300, 513
AspLEI	GCGC	1 cut(s)	70
AspS9I	GGNCC	3 cut(s)	51, 78, 493
AsuC2I	CCSGG	2 cut(s)	305, 491
AsuHPI	GGTGA	2 cut(s)	154, 229
AvaII	GGWCC	1 cut(s)	493
BaeI	ACNNNNGTAYC	2 cut(s)	424, 457
BanII	GRGCYC	1 cut(s)	45
BbvI	GCAGC	1 cut(s)	312
BceAI	ACGGC	6 cut(s)	213, 226, 241, 393, 423, 523
BciT130I	CCWGG	2 cut(s)	49, 215
BciVI	GTATCC	2 cut(s)	284, 425
BcnI	CCSGG	2 cut(s)	305, 491
BcoDI	GTCTC	1 cut(s)	125
BfoI	RGCGCY	1 cut(s)	71
BfuI	GTATCC	2 cut(s)	284, 425
BglI	GCCNNNNNGGC	1 cut(s)	309
BisI	GCNGC	7 cut(s)	280, 301, 463, 466, 487, 511, 514
BlsI	GCNGC	7 cut(s)	281, 302, 464, 467, 488, 512, 515
Bme1390I	CCNGG	4 cut(s)	49, 215, 305, 491
Bme18I	GGWCC	1 cut(s)	493
BmgT120I	GGNCC	3 cut(s)	51, 78, 493
BmiI	GGNNCC	1 cut(s)	494
BmrFI	CCNGG	4 cut(s)	49, 215, 305, 491
BpuMI	CCSGG	2 cut(s)	305, 491
BsaI	GGTCTC	1 cut(s)	125
BsaJI	CCNNGG	5 cut(s)	48, 259, 304, 439, 496
BsaWI	WCCGGW	1 cut(s)	134
BseBI	CCWGG	2 cut(s)	49, 215
BseDI	CCNNGG	5 cut(s)	48, 259, 304, 439, 496
BseMII	CTCAG	1 cut(s)	266
BseX3I	CGGCCG	2 cut(s)	226, 487
BseXI	GCAGC	1 cut(s)	312
Bsh1236I	CGCG	3 cut(s)	129, 194, 261
Bsh1285I	CGRYCG	4 cut(s)	127, 198, 229, 490
BshFI	GGCC	8 cut(s)	5, 53, 80, 182, 213, 228, 408, 489
BsiEI	CGRYCG	4 cut(s)	127, 198, 229, 490
BsiSI	CCGG	3 cut(s)	135, 304, 490
BslFI	GGGAC	3 cut(s)	203, 241, 506
BsmAI	GTCTC	1 cut(s)	125
BsmFI	GGGAC	3 cut(s)	203, 241, 506
BsnI	GGCC	8 cut(s)	5, 53, 80, 182, 213, 228, 408, 489
Bso31I	GGTCTC	1 cut(s)	125
Bsp1286I	GDGCHC	1 cut(s)	45
Bsp143I	GATC	6 cut(s)	15, 99, 114, 195, 217, 500
BspANI	GGCC	8 cut(s)	5, 53, 80, 182, 213, 228, 408, 489
BspCNI	CTCAG	1 cut(s)	265
BspFNI	CGCG	3 cut(s)	129, 194, 261
BspLI	GGNNCC	1 cut(s)	494
BspPI	GGATC	2 cut(s)	225, 508
BspTNI	GGTCTC	1 cut(s)	125
BssECI	CCNNGG	5 cut(s)	48, 259, 304, 439, 496
BssMI	GATC	6 cut(s)	15, 99, 114, 195, 217, 500
Bst2UI	CCWGG	2 cut(s)	49, 215
Bst4CI	ACNGT	6 cut(s)	241, 296, 323, 344, 377, 497
BstC8I	GCNNGC	1 cut(s)	45
BstDEI	CTNAG	1 cut(s)	252
BstDSI	CCRYGG	3 cut(s)	259, 439, 496
BstFNI	CGCG	3 cut(s)	129, 194, 261
BstH2I	RGCGCY	1 cut(s)	71
BstHHI	GCGC	1 cut(s)	70
BstKTI	GATC	6 cut(s)	18, 102, 117, 198, 220, 503
BstMAI	GTCTC	1 cut(s)	125
BstMBI	GATC	6 cut(s)	15, 99, 114, 195, 217, 500
BstMCI	CGRYCG	4 cut(s)	127, 198, 229, 490
BstMWI	GCNNNNNNNGC	6 cut(s)	210, 279, 309, 405, 459, 471
BstNI	CCWGG	2 cut(s)	49, 215
BstSCI	CCNGG	4 cut(s)	47, 213, 303, 489
BstUI	CGCG	3 cut(s)	129, 194, 261
BstV1I	GCAGC	1 cut(s)	312
BstX2I	RGATCY	2 cut(s)	217, 500
BstYI	RGATCY	2 cut(s)	217, 500
BstZI	CGGCCG	2 cut(s)	226, 487
BsuI	GTATCC	2 cut(s)	284, 425
BsuRI	GGCC	8 cut(s)	5, 53, 80, 182, 213, 228, 408, 489
BtgI	CCRYGG	3 cut(s)	259, 439, 496
Cac8I	GCNNGC	1 cut(s)	45
CfoI	GCGC	1 cut(s)	70
Cfr13I	GGNCC	3 cut(s)	51, 78, 493
Cfr42I	CCGCGG	1 cut(s)	262
CseI	GACGC	1 cut(s)	200
CviAII	CATG	2 cut(s)	184, 205
DdeI	CTNAG	1 cut(s)	252
DpnI	GATC	6 cut(s)	17, 101, 116, 197, 219, 502
DpnII	GATC	6 cut(s)	15, 99, 114, 195, 217, 500
DrdI	GACNNNNNNGTC	1 cut(s)	139
DseDI	GACNNNNNNGTC	1 cut(s)	139
EaeI	YGGCCR	4 cut(s)	211, 226, 406, 487
EagI	CGGCCG	2 cut(s)	226, 487
EciI	GGCGGA	1 cut(s)	288
EclXI	CGGCCG	2 cut(s)	226, 487
Eco24I	GRGCYC	1 cut(s)	45
Eco31I	GGTCTC	1 cut(s)	125
Eco47I	GGWCC	1 cut(s)	493
Eco52I	CGGCCG	2 cut(s)	226, 487
Eco57I	CTGAAG	1 cut(s)	151
EcoO109I	RGGNCCY	1 cut(s)	78
EcoRII	CCWGG	2 cut(s)	47, 213
EcoT38I	GRGCYC	1 cut(s)	45
FaeI	CATG	2 cut(s)	187, 208
FaiI	YATR	5 cut(s)	185, 206, 396, 456, 477
FaqI	GGGAC	3 cut(s)	203, 241, 506
FatI	CATG	2 cut(s)	183, 204
FauI	CCCGC	1 cut(s)	266
Fnu4HI	GCNGC	7 cut(s)	280, 301, 463, 466, 487, 511, 514
FriOI	GRGCYC	1 cut(s)	45
Fsp4HI	GCNGC	7 cut(s)	280, 301, 463, 466, 487, 511, 514
GlaI	GCGC	1 cut(s)	69
GluI	GCNGC	7 cut(s)	280, 301, 463, 466, 487, 511, 514
HaeII	RGCGCY	1 cut(s)	71
HaeIII	GGCC	8 cut(s)	5, 53, 80, 182, 213, 228, 408, 489
HapII	CCGG	3 cut(s)	135, 304, 490
HgaI	GACGC	1 cut(s)	200
HhaI	GCGC	1 cut(s)	70
Hin1II	CATG	2 cut(s)	187, 208
Hin6I	GCGC	1 cut(s)	68
HinP1I	GCGC	1 cut(s)	68
HincII	GTYRAC	1 cut(s)	244
HindII	GTYRAC	1 cut(s)	244
HinfI	GANTC	2 cut(s)	107, 156
HpaII	CCGG	3 cut(s)	135, 304, 490
HphI	GGTGA	2 cut(s)	154, 229
Hpy166II	GTNNAC	1 cut(s)	244
Hpy188I	TCNGA	3 cut(s)	38, 155, 505
Hpy188III	TCNNGA	3 cut(s)	221, 353, 413
Hpy8I	GTNNAC	1 cut(s)	244
Hpy99I	CGWCG	4 cut(s)	38, 227, 354, 414
HpyAV	CCTTC	5 cut(s)	132, 172, 175, 194, 410
HpyCH4III	ACNGT	6 cut(s)	241, 296, 323, 344, 377, 497
HpyF10VI	GCNNNNNNNGC	6 cut(s)	210, 279, 309, 405, 459, 471
HpyF3I	CTNAG	1 cut(s)	252
Hsp92II	CATG	2 cut(s)	187, 208
HspAI	GCGC	1 cut(s)	68
KspI	CCGCGG	1 cut(s)	262
Kzo9I	GATC	6 cut(s)	15, 99, 114, 195, 217, 500
LmnI	GCTCC	1 cut(s)	91
LpnPI	CCDG	8 cut(s)	34, 61, 148, 200, 227, 317, 502, 503
Lsp1109I	GCAGC	1 cut(s)	312
MaeIII	GTNAC	3 cut(s)	160, 230, 338
MalI	GATC	6 cut(s)	17, 101, 116, 197, 219, 502
MboI	GATC	6 cut(s)	15, 99, 114, 195, 217, 500
MboII	GAAGA	1 cut(s)	124
MflI	RGATCY	2 cut(s)	217, 500
MhlI	GDGCHC	1 cut(s)	45
MmeI	TCCRAC	1 cut(s)	16
MseI	TTAA	1 cut(s)	526
MspA1I	CMGCKG	2 cut(s)	261, 516
MspI	CCGG	3 cut(s)	135, 304, 490
MspR9I	CCNGG	4 cut(s)	49, 215, 305, 491
MvaI	CCWGG	2 cut(s)	49, 215
MvnI	CGCG	3 cut(s)	129, 194, 261
MwoI	GCNNNNNNNGC	6 cut(s)	210, 279, 309, 405, 459, 471
NciI	CCSGG	2 cut(s)	305, 491
NdeII	GATC	6 cut(s)	15, 99, 114, 195, 217, 500
NlaIII	CATG	2 cut(s)	187, 208
NlaIV	GGNNCC	1 cut(s)	494
NmeAIII	GCCGAG	1 cut(s)	37
NmuCI	GTSAC	1 cut(s)	160
PcsI	WCGNNNNNNNCGW	1 cut(s)	69
PfeI	GAWTC	2 cut(s)	107, 156
PkrI	GCNGC	7 cut(s)	281, 302, 464, 467, 488, 512, 515
Ple19I	CGATCG	1 cut(s)	198
Psp6I	CCWGG	2 cut(s)	47, 213
PspGI	CCWGG	2 cut(s)	47, 213
PspN4I	GGNNCC	1 cut(s)	494
PspPI	GGNCC	3 cut(s)	51, 78, 493
PsuI	RGATCY	2 cut(s)	217, 500
PvuI	CGATCG	1 cut(s)	198
PvuII	CAGCTG	1 cut(s)	516
SacII	CCGCGG	1 cut(s)	262
SaqAI	TTAA	1 cut(s)	526
SatI	GCNGC	7 cut(s)	280, 301, 463, 466, 487, 511, 514
Sau3AI	GATC	6 cut(s)	15, 99, 114, 195, 217, 500
Sau96I	GGNCC	3 cut(s)	51, 78, 493
ScrFI	CCNGG	4 cut(s)	49, 215, 305, 491
SduI	GDGCHC	1 cut(s)	45
SetI	ASST	7 cut(s)	143, 167, 394, 421, 455, 484, 518
Sfr303I	CCGCGG	1 cut(s)	262
SgrBI	CCGCGG	1 cut(s)	262
SinI	GGWCC	1 cut(s)	493
StyD4I	CCNGG	4 cut(s)	47, 213, 303, 489
TaaI	ACNGT	6 cut(s)	241, 296, 323, 344, 377, 497
TaqI	TCGA	6 cut(s)	18, 72, 105, 110, 198, 222
TauI	GCSGC	5 cut(s)	282, 465, 468, 489, 513
TfiI	GAWTC	2 cut(s)	107, 156
Tru1I	TTAA	1 cut(s)	526
Tru9I	TTAA	1 cut(s)	526
TseFI	GTSAC	1 cut(s)	160
TseI	GCWGC	2 cut(s)	300, 513
Tsp45I	GTSAC	1 cut(s)	160
TspDTI	ATGAA	1 cut(s)	221
TspGWI	ACGGA	1 cut(s)	14
VpaK11BI	GGWCC	1 cut(s)	493

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.