Prupe.5G141500_v2.0.a1

RNA binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp05
OG0004608
Physical Location & Seq
Forward (+)
13150979 .. 13151962
984 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.5G141500.1

Sequence Viewer

Length: 330 bp
ATGAAATACCTTTATTACCCTTTTAACATAAAATTTGAATTAATCAGCACCATATCAAAACTCATTTCACGACCTCCAGTCTCTCATCTTCATCTTCAACCCCAATTTTCAGTTTTTGTTATTCCACCTCAATTTTTGTTCAACCTCATCATTCTAAGCTTCGTCGGAGGCCTCTCCTGGGCCACCGACGATGATGCGCTGGAGAGAGCCTTTTCTTTGTTGATCATCAATGATCGTGAGATTGGGAGGTCCAGGGACTTCAGCTTCGTCACCTTCAGGGCCGGCCCTTGGTCAGAGCAACTAGGGCCATCGCCCGGGGCCCACAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0001558 GO:0003674 GO:0003676 GO:0003723 GO:0003727 GO:0003729 GO:0003730 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005730 GO:0005737 GO:0006139 GO:0006396 GO:0006412 GO:0006417 GO:0006518 GO:0006725 GO:0006807 GO:0006950 GO:0006996 GO:0008150 GO:0008152 GO:0008187 GO:0008266 GO:0009058 GO:0009059 GO:0009266 GO:0009314 GO:0009409 GO:0009411 GO:0009416 GO:0009628 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009894 GO:0009895 GO:0009987 GO:0010033 GO:0010467 GO:0010468 GO:0010494 GO:0010556 GO:0010557 GO:0010558 GO:0010564 GO:0010604 GO:0010605 GO:0010608 GO:0010628 GO:0010629 GO:0014070 GO:0016043 GO:0016070 GO:0016441 GO:0016458 GO:0017148 GO:0019219 GO:0019222 GO:0019538 GO:0019843 GO:0022607 GO:0022613 GO:0022618 GO:0030308 GO:0030371 GO:0030425 GO:0031047 GO:0031050 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0031329 GO:0031330 GO:0031974 GO:0031981 GO:0032268 GO:0032269 GO:0032270 GO:0032991 GO:0033554 GO:0034063 GO:0034248 GO:0034249 GO:0034250 GO:0034622 GO:0034641 GO:0034645 GO:0035194 GO:0035195 GO:0035196 GO:0035770 GO:0036464 GO:0036477 GO:0040008 GO:0040029 GO:0042221 GO:0042995 GO:0043005 GO:0043021 GO:0043023 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043331 GO:0043487 GO:0043488 GO:0043489 GO:0043603 GO:0043604 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044463 GO:0044464 GO:0044877 GO:0045182 GO:0045727 GO:0045926 GO:0045934 GO:0046483 GO:0048255 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051171 GO:0051172 GO:0051173 GO:0051246 GO:0051247 GO:0051248 GO:0051252 GO:0051253 GO:0051716 GO:0051726 GO:0060255 GO:0061013 GO:0065003 GO:0065007 GO:0065008 GO:0070013 GO:0070181 GO:0070417 GO:0070887 GO:0070918 GO:0070925 GO:0071310 GO:0071359 GO:0071407 GO:0071704 GO:0071826 GO:0071840 GO:0080090 GO:0090304 GO:0097159 GO:0097447 GO:0097458 GO:0120025 GO:0120038 GO:1901360 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1901698 GO:1901699 GO:1901987 GO:1902369 GO:1902373 GO:1902806 GO:1903311 GO:1903312 GO:1990904 GO:2000112 GO:2000113
KEGG Pathways
Metabolic & Signaling
ko03013 ko03015 ko03018 map03013 map03015 map03018
Pfam Domains
Protein Families
RRM_1

Protein Analysis

110

Amino Acids

12.44

Weight (kDa)

6.82

Isoelectric Point (pI)

48.85

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 32
AcuI CTGAAG 2 cut(s) 244, 259
AfiI CCNNNNNNNGG 3 cut(s) 178, 288, 314
AgsI TTSAA 3 cut(s) 38, 98, 142
AhdI GACNNNNNGTC 1 cut(s) 77
AjnI CCWGG 2 cut(s) 176, 251
AluBI AGCT 2 cut(s) 159, 264
AluI AGCT 2 cut(s) 159, 264
Alw26I GTCTC 1 cut(s) 85
Ama87I CYCGRG 1 cut(s) 314
AoxI GGCC 6 cut(s) 169, 180, 279, 283, 305, 318
ApaI GGGCCC 1 cut(s) 322
ApoI RAATTY 1 cut(s) 32
ArsI GACNNNNNNTTYG 2 cut(s) 248, 280
AseI ATTAAT 1 cut(s) 41
AspLEI GCGC 1 cut(s) 199
AspS9I GGNCC 7 cut(s) 180, 249, 279, 284, 305, 318, 319
AsuC2I CCSGG 2 cut(s) 315, 316
AsuHPI GGTGA 1 cut(s) 262
AvaI CYCGRG 1 cut(s) 314
AvaII GGWCC 1 cut(s) 249
BaeGI GKGCMC 1 cut(s) 322
BanII GRGCYC 1 cut(s) 322
BccI CCATC 1 cut(s) 316
BcgI CGANNNNNNTGC 2 cut(s) 176, 210
BciT130I CCWGG 2 cut(s) 178, 253
BclI TGATCA 1 cut(s) 222
BcnI CCSGG 2 cut(s) 315, 316
BcoDI GTCTC 1 cut(s) 85
BfaI CTAG 1 cut(s) 302
Bme1390I CCNGG 4 cut(s) 178, 253, 315, 316
Bme18I GGWCC 1 cut(s) 249
BmeRI GACNNNNNGTC 1 cut(s) 77
BmeT110I CYCGRG 1 cut(s) 314
BmgT120I GGNCC 7 cut(s) 180, 249, 279, 284, 305, 318, 319
BmiI GGNNCC 2 cut(s) 319, 320
BmrFI CCNGG 4 cut(s) 178, 253, 315, 316
BmsI GCATC 1 cut(s) 184
BpmI CTGGAG 2 cut(s) 60, 221
BpuMI CCSGG 2 cut(s) 315, 316
BsaJI CCNNGG 5 cut(s) 177, 252, 287, 314, 315
Bsc4I CCNNNNNNNGG 3 cut(s) 178, 288, 314
Bse118I RCCGGY 1 cut(s) 281
Bse1I ACTGG 1 cut(s) 77
BseBI CCWGG 2 cut(s) 178, 253
BseDI CCNNGG 5 cut(s) 177, 252, 287, 314, 315
BseLI CCNNNNNNNGG 3 cut(s) 178, 288, 314
BseNI ACTGG 1 cut(s) 77
BseSI GKGCMC 1 cut(s) 322
BshFI GGCC 6 cut(s) 171, 182, 281, 285, 307, 320
BsiHKCI CYCGRG 1 cut(s) 314
BsiSI CCGG 2 cut(s) 282, 315
BslFI GGGAC 1 cut(s) 269
BslI CCNNNNNNNGG 3 cut(s) 178, 288, 314
BsmAI GTCTC 1 cut(s) 85
BsmFI GGGAC 1 cut(s) 269
BsnI GGCC 6 cut(s) 171, 182, 281, 285, 307, 320
BsoBI CYCGRG 1 cut(s) 314
Bsp120I GGGCCC 1 cut(s) 318
Bsp1286I GDGCHC 1 cut(s) 322
Bsp143I GATC 2 cut(s) 222, 232
BspANI GGCC 6 cut(s) 171, 182, 281, 285, 307, 320
BspLI GGNNCC 2 cut(s) 319, 320
BsrFI RCCGGY 1 cut(s) 281
BsrI ACTGG 1 cut(s) 77
BssAI RCCGGY 1 cut(s) 281
BssECI CCNNGG 5 cut(s) 177, 252, 287, 314, 315
BssMI GATC 2 cut(s) 222, 232
BssT1I CCWWGG 1 cut(s) 287
Bst2UI CCWGG 2 cut(s) 178, 253
BstC8I GCNNGC 1 cut(s) 283
BstDEI CTNAG 1 cut(s) 155
BstHHI GCGC 1 cut(s) 199
BstKTI GATC 2 cut(s) 225, 235
BstMAI GTCTC 1 cut(s) 85
BstMBI GATC 2 cut(s) 222, 232
BstMWI GCNNNNNNNGC 1 cut(s) 304
BstNI CCWGG 2 cut(s) 178, 253
BstSCI CCNGG 4 cut(s) 176, 251, 313, 314
BstSLI GKGCMC 1 cut(s) 322
BsuRI GGCC 6 cut(s) 171, 182, 281, 285, 307, 320
BtgZI GCGATG 1 cut(s) 294
Cac8I GCNNGC 1 cut(s) 283
CfoI GCGC 1 cut(s) 199
Cfr10I RCCGGY 1 cut(s) 281
Cfr13I GGNCC 7 cut(s) 180, 249, 279, 284, 305, 318, 319
Cfr9I CCCGGG 1 cut(s) 314
CviJI RGCY 9 cut(s) 159, 171, 182, 209, 264, 281, 285, 307, 320
CviKI_1 RGCY 9 cut(s) 159, 171, 182, 209, 264, 281, 285, 307, 320
DdeI CTNAG 1 cut(s) 155
DpnI GATC 2 cut(s) 224, 234
DpnII GATC 2 cut(s) 222, 232
DriI GACNNNNNGTC 1 cut(s) 77
Eam1105I GACNNNNNGTC 1 cut(s) 77
Eco130I CCWWGG 1 cut(s) 287
Eco147I AGGCCT 1 cut(s) 171
Eco24I GRGCYC 1 cut(s) 322
Eco47I GGWCC 1 cut(s) 249
Eco57I CTGAAG 2 cut(s) 244, 259
Eco88I CYCGRG 1 cut(s) 314
EcoO109I RGGNCCY 1 cut(s) 318
EcoRII CCWGG 2 cut(s) 176, 251
EcoT14I CCWWGG 1 cut(s) 287
EcoT38I GRGCYC 1 cut(s) 322
ErhI CCWWGG 1 cut(s) 287
FaiI YATR 2 cut(s) 29, 53
FaqI GGGAC 1 cut(s) 269
FbaI TGATCA 1 cut(s) 222
FriOI GRGCYC 1 cut(s) 322
FseI GGCCGGCC 1 cut(s) 285
FspBI CTAG 1 cut(s) 302
GlaI GCGC 1 cut(s) 198
GsuI CTGGAG 2 cut(s) 60, 221
HaeIII GGCC 6 cut(s) 171, 182, 281, 285, 307, 320
HapII CCGG 2 cut(s) 282, 315
HhaI GCGC 1 cut(s) 199
Hin6I GCGC 1 cut(s) 197
HinP1I GCGC 1 cut(s) 197
HindIII AAGCTT 1 cut(s) 157
HpaII CCGG 2 cut(s) 282, 315
HphI GGTGA 1 cut(s) 262
Hpy188I TCNGA 2 cut(s) 167, 295
Hpy188III TCNNGA 2 cut(s) 69, 236
Hpy99I CGWCG 2 cut(s) 167, 191
HpyAV CCTTC 1 cut(s) 283
HpyF10VI GCNNNNNNNGC 1 cut(s) 304
HpyF3I CTNAG 1 cut(s) 155
HspAI GCGC 1 cut(s) 197
KroI GCCGGC 1 cut(s) 281
KroNI GCCGGC 1 cut(s) 283
Ksp22I TGATCA 1 cut(s) 222
Kzo9I GATC 2 cut(s) 222, 232
LpnPI CCDG 8 cut(s) 90, 163, 185, 190, 238, 262, 265, 295
LweI GCATC 1 cut(s) 184
MaeI CTAG 1 cut(s) 302
MaeIII GTNAC 1 cut(s) 268
MalI GATC 2 cut(s) 224, 234
MboI GATC 2 cut(s) 222, 232
MboII GAAGA 2 cut(s) 80, 86
MfeI CAATTG 1 cut(s) 325
MhlI GDGCHC 1 cut(s) 322
MluCI AATT 5 cut(s) 32, 38, 104, 131, 325
MmeI TCCRAC 1 cut(s) 145
MnlI CCTC 6 cut(s) 84, 138, 155, 161, 182, 240
MroNI GCCGGC 1 cut(s) 281
MseI TTAA 2 cut(s) 24, 41
MspI CCGG 2 cut(s) 282, 315
MspR9I CCNGG 4 cut(s) 178, 253, 315, 316
MunI CAATTG 1 cut(s) 325
MvaI CCWGG 2 cut(s) 178, 253
MwoI GCNNNNNNNGC 1 cut(s) 304
NaeI GCCGGC 1 cut(s) 283
NciI CCSGG 2 cut(s) 315, 316
NdeII GATC 2 cut(s) 222, 232
NgoMIV GCCGGC 1 cut(s) 281
NlaIV GGNNCC 2 cut(s) 319, 320
NmuCI GTSAC 1 cut(s) 268
PceI AGGCCT 1 cut(s) 171
PdiI GCCGGC 1 cut(s) 283
PshBI ATTAAT 1 cut(s) 41
Psp6I CCWGG 2 cut(s) 176, 251
PspGI CCWGG 2 cut(s) 176, 251
PspN4I GGNNCC 2 cut(s) 319, 320
PspOMI GGGCCC 1 cut(s) 318
PspPI GGNCC 7 cut(s) 180, 249, 279, 284, 305, 318, 319
RigI GGCCGGCC 1 cut(s) 285
SaqAI TTAA 2 cut(s) 24, 41
Sau3AI GATC 2 cut(s) 222, 232
Sau96I GGNCC 7 cut(s) 180, 249, 279, 284, 305, 318, 319
ScrFI CCNGG 4 cut(s) 178, 253, 315, 316
SduI GDGCHC 1 cut(s) 322
SetI ASST 8 cut(s) 12, 76, 130, 147, 161, 251, 266, 275
SfaNI GCATC 1 cut(s) 184
SinI GGWCC 1 cut(s) 249
SmaI CCCGGG 1 cut(s) 316
Sse9I AATT 5 cut(s) 32, 38, 104, 131, 325
SseBI AGGCCT 1 cut(s) 171
SspMI CTAG 1 cut(s) 302
StuI AGGCCT 1 cut(s) 171
StyD4I CCNGG 4 cut(s) 176, 251, 313, 314
StyI CCWWGG 1 cut(s) 287
TasI AATT 5 cut(s) 32, 38, 104, 131, 325
Tru1I TTAA 2 cut(s) 24, 41
Tru9I TTAA 2 cut(s) 24, 41
TseFI GTSAC 1 cut(s) 268
Tsp45I GTSAC 1 cut(s) 268
TspDTI ATGAA 2 cut(s) 17, 80
TspMI CCCGGG 1 cut(s) 314
VpaK11BI GGWCC 1 cut(s) 249
VspI ATTAAT 1 cut(s) 41
XapI RAATTY 1 cut(s) 32
XmaI CCCGGG 1 cut(s) 314
XspI CTAG 1 cut(s) 302
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.