Rw0G020850

RNA recognition motif

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Contig00957
OG0004608
Physical Location & Seq
Reverse (-)
40334 .. 41146
813 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw0G020850.1

Sequence Viewer

Length: 528 bp
ATGGCCTCTGCCGAGATCGAGTTCCGTTGCTTCGTCGGAGGGCTCGCCTGGGCCACCGACAACGAGGCCCTCGAAAGGGCCTTTGCTCCTTTTGGCGAGATCATCGAATCGAAGATCATCAACGACCGCGAGACCGGAAGGTCAAGGGGATTCGGATTCGTCACCTTCAGCAACGAGAAGGCCATGAGGGACGCGATCGAAGGCATGAACGGCCAGGACCTTGACGGCCGTAACATCACCGTCAACGAGGCTCAGTCCCGCGGAAGCGGTGGCGGAGGCGGCGGTGGTGGATACGGTGGCAGCCGGGGAGGCGGTGGCTACGGTGGTGGTGGCGGTTACGGTGGCCGTCGTGAAGGTGGAGGCGGTGGCTACGGAAGTGGCGGTGGAGGTTATGGCGGTGGTGGCCGTCGCGAGGGTGGAGGCGGTGGATACAGCCGTGGAGGTGGAAGCTATGGAAGCGGTGGTGGAGGTGGCTACGGAGGTGGTGGCCGGGACCGTGGATCTGATGGCGGTAGCTGGAGGAGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03040 map03040
Pfam Domains
Protein Families
RRM_1

Protein Analysis

175

Amino Acids

17.06

Weight (kDa)

6.35

Isoelectric Point (pI)

61.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_1 PF00076 11 - 80 3.1e-22 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 139
AccII CGCG 4 cut(s) 129, 194, 261, 411
AclWI GGATC 1 cut(s) 508
AcoI YGGCCR 5 cut(s) 211, 226, 343, 403, 487
AcuI CTGAAG 1 cut(s) 151
AfiI CCNNNNNNNGG 3 cut(s) 75, 76, 412
AjnI CCWGG 2 cut(s) 47, 213
AluBI AGCT 2 cut(s) 450, 516
AluI AGCT 2 cut(s) 450, 516
Alw26I GTCTC 1 cut(s) 125
AlwI GGATC 1 cut(s) 508
ApeKI GCWGC 1 cut(s) 300
AspS9I GGNCC 5 cut(s) 51, 67, 78, 217, 493
AsuC2I CCSGG 2 cut(s) 305, 491
AsuHPI GGTGA 2 cut(s) 154, 229
AvaII GGWCC 2 cut(s) 217, 493
BaeI ACNNNNGTAYC 2 cut(s) 421, 454
BanII GRGCYC 1 cut(s) 45
BbvI GCAGC 1 cut(s) 312
BccI CCATC 1 cut(s) 500
BceAI ACGGC 6 cut(s) 213, 226, 241, 330, 390, 420
BciT130I CCWGG 2 cut(s) 49, 215
BciVI GTATCC 2 cut(s) 284, 422
BcnI CCSGG 2 cut(s) 305, 491
BcoDI GTCTC 1 cut(s) 125
BfuI GTATCC 2 cut(s) 284, 422
BglI GCCNNNNNGGC 1 cut(s) 309
BisI GCNGC 2 cut(s) 280, 301
BlsI GCNGC 2 cut(s) 281, 302
Bme1390I CCNGG 4 cut(s) 49, 215, 305, 491
Bme18I GGWCC 2 cut(s) 217, 493
BmgT120I GGNCC 5 cut(s) 51, 67, 78, 217, 493
BmiI GGNNCC 1 cut(s) 494
BmrFI CCNGG 4 cut(s) 49, 215, 305, 491
BpuMI CCSGG 2 cut(s) 305, 491
BsaI GGTCTC 1 cut(s) 125
BsaJI CCNNGG 5 cut(s) 48, 259, 304, 436, 496
BsaWI WCCGGW 1 cut(s) 134
Bsc4I CCNNNNNNNGG 3 cut(s) 75, 76, 412
BseBI CCWGG 2 cut(s) 49, 215
BseDI CCNNGG 5 cut(s) 48, 259, 304, 436, 496
BseLI CCNNNNNNNGG 3 cut(s) 75, 76, 412
BseMII CTCAG 1 cut(s) 266
BseX3I CGGCCG 1 cut(s) 226
BseXI GCAGC 1 cut(s) 312
Bsh1236I CGCG 4 cut(s) 129, 194, 261, 411
Bsh1285I CGRYCG 3 cut(s) 127, 198, 229
BsiEI CGRYCG 3 cut(s) 127, 198, 229
BsiSI CCGG 3 cut(s) 135, 304, 490
BslFI GGGAC 3 cut(s) 203, 241, 506
BslI CCNNNNNNNGG 3 cut(s) 75, 76, 412
BsmAI GTCTC 1 cut(s) 125
BsmFI GGGAC 3 cut(s) 203, 241, 506
Bso31I GGTCTC 1 cut(s) 125
Bsp1286I GDGCHC 1 cut(s) 45
Bsp143I GATC 5 cut(s) 15, 99, 114, 195, 500
Bsp68I TCGCGA 1 cut(s) 411
BspCNI CTCAG 1 cut(s) 265
BspFNI CGCG 4 cut(s) 129, 194, 261, 411
BspLI GGNNCC 1 cut(s) 494
BspPI GGATC 1 cut(s) 508
BspTNI GGTCTC 1 cut(s) 125
BssECI CCNNGG 5 cut(s) 48, 259, 304, 436, 496
BssMI GATC 5 cut(s) 15, 99, 114, 195, 500
Bst2UI CCWGG 2 cut(s) 49, 215
Bst4CI ACNGT 5 cut(s) 241, 296, 323, 341, 497
BstC8I GCNNGC 1 cut(s) 45
BstDEI CTNAG 1 cut(s) 252
BstDSI CCRYGG 3 cut(s) 259, 436, 496
BstFNI CGCG 4 cut(s) 129, 194, 261, 411
BstKTI GATC 5 cut(s) 18, 102, 117, 198, 503
BstMAI GTCTC 1 cut(s) 125
BstMBI GATC 5 cut(s) 15, 99, 114, 195, 500
BstMCI CGRYCG 3 cut(s) 127, 198, 229
BstMWI GCNNNNNNNGC 5 cut(s) 210, 279, 309, 402, 456
BstNI CCWGG 2 cut(s) 49, 215
BstSCI CCNGG 4 cut(s) 47, 213, 303, 489
BstUI CGCG 4 cut(s) 129, 194, 261, 411
BstV1I GCAGC 1 cut(s) 312
BstX2I RGATCY 1 cut(s) 500
BstYI RGATCY 1 cut(s) 500
BstZI CGGCCG 1 cut(s) 226
BsuI GTATCC 2 cut(s) 284, 422
BtgI CCRYGG 3 cut(s) 259, 436, 496
BtuMI TCGCGA 1 cut(s) 411
Cac8I GCNNGC 1 cut(s) 45
Cfr13I GGNCC 5 cut(s) 51, 67, 78, 217, 493
Cfr42I CCGCGG 1 cut(s) 262
CseI GACGC 1 cut(s) 200
CviAII CATG 2 cut(s) 184, 205
DdeI CTNAG 1 cut(s) 252
DpnI GATC 5 cut(s) 17, 101, 116, 197, 502
DpnII GATC 5 cut(s) 15, 99, 114, 195, 500
DrdI GACNNNNNNGTC 1 cut(s) 139
DseDI GACNNNNNNGTC 1 cut(s) 139
EaeI YGGCCR 5 cut(s) 211, 226, 343, 403, 487
EagI CGGCCG 1 cut(s) 226
EciI GGCGGA 1 cut(s) 288
EclXI CGGCCG 1 cut(s) 226
Eco24I GRGCYC 1 cut(s) 45
Eco31I GGTCTC 1 cut(s) 125
Eco47I GGWCC 2 cut(s) 217, 493
Eco52I CGGCCG 1 cut(s) 226
Eco57I CTGAAG 1 cut(s) 151
EcoO109I RGGNCCY 3 cut(s) 67, 78, 217
EcoRII CCWGG 2 cut(s) 47, 213
EcoT38I GRGCYC 1 cut(s) 45
FaeI CATG 2 cut(s) 187, 208
FaiI YATR 4 cut(s) 185, 206, 393, 453
FaqI GGGAC 3 cut(s) 203, 241, 506
FatI CATG 2 cut(s) 183, 204
FauI CCCGC 1 cut(s) 266
Fnu4HI GCNGC 2 cut(s) 280, 301
FriOI GRGCYC 1 cut(s) 45
Fsp4HI GCNGC 2 cut(s) 280, 301
GluI GCNGC 2 cut(s) 280, 301
HapII CCGG 3 cut(s) 135, 304, 490
HgaI GACGC 1 cut(s) 200
Hin1II CATG 2 cut(s) 187, 208
HincII GTYRAC 1 cut(s) 244
HindII GTYRAC 1 cut(s) 244
HinfI GANTC 3 cut(s) 107, 150, 156
HpaII CCGG 3 cut(s) 135, 304, 490
HphI GGTGA 2 cut(s) 154, 229
Hpy166II GTNNAC 1 cut(s) 244
Hpy188I TCNGA 3 cut(s) 38, 155, 505
Hpy188III TCNNGA 2 cut(s) 350, 410
Hpy8I GTNNAC 1 cut(s) 244
Hpy99I CGWCG 3 cut(s) 38, 351, 411
HpyAV CCTTC 5 cut(s) 132, 172, 175, 194, 347
HpyCH4III ACNGT 5 cut(s) 241, 296, 323, 341, 497
HpyF10VI GCNNNNNNNGC 5 cut(s) 210, 279, 309, 402, 456
HpyF3I CTNAG 1 cut(s) 252
Hsp92II CATG 2 cut(s) 187, 208
KspI CCGCGG 1 cut(s) 262
Kzo9I GATC 5 cut(s) 15, 99, 114, 195, 500
LmnI GCTCC 1 cut(s) 91
LpnPI CCDG 8 cut(s) 34, 61, 148, 200, 227, 317, 502, 503
Lsp1109I GCAGC 1 cut(s) 312
MaeIII GTNAC 3 cut(s) 160, 230, 335
MalI GATC 5 cut(s) 17, 101, 116, 197, 502
MboI GATC 5 cut(s) 15, 99, 114, 195, 500
MboII GAAGA 1 cut(s) 124
MflI RGATCY 1 cut(s) 500
MhlI GDGCHC 1 cut(s) 45
MmeI TCCRAC 1 cut(s) 16
MspA1I CMGCKG 1 cut(s) 261
MspI CCGG 3 cut(s) 135, 304, 490
MspR9I CCNGG 4 cut(s) 49, 215, 305, 491
MvaI CCWGG 2 cut(s) 49, 215
MvnI CGCG 4 cut(s) 129, 194, 261, 411
MwoI GCNNNNNNNGC 5 cut(s) 210, 279, 309, 402, 456
NciI CCSGG 2 cut(s) 305, 491
NdeII GATC 5 cut(s) 15, 99, 114, 195, 500
NlaIII CATG 2 cut(s) 187, 208
NlaIV GGNNCC 1 cut(s) 494
NmeAIII GCCGAG 1 cut(s) 37
NmuCI GTSAC 1 cut(s) 160
NruI TCGCGA 1 cut(s) 411
PcsI WCGNNNNNNNCGW 1 cut(s) 69
PfeI GAWTC 3 cut(s) 107, 150, 156
PkrI GCNGC 2 cut(s) 281, 302
Ple19I CGATCG 1 cut(s) 198
PpuMI RGGWCCY 1 cut(s) 217
Psp5II RGGWCCY 1 cut(s) 217
Psp6I CCWGG 2 cut(s) 47, 213
PspGI CCWGG 2 cut(s) 47, 213
PspN4I GGNNCC 1 cut(s) 494
PspPI GGNCC 5 cut(s) 51, 67, 78, 217, 493
PspPPI RGGWCCY 1 cut(s) 217
PsuI RGATCY 1 cut(s) 500
PvuI CGATCG 1 cut(s) 198
RruI TCGCGA 1 cut(s) 411
SacII CCGCGG 1 cut(s) 262
SatI GCNGC 2 cut(s) 280, 301
Sau3AI GATC 5 cut(s) 15, 99, 114, 195, 500
Sau96I GGNCC 5 cut(s) 51, 67, 78, 217, 493
ScrFI CCNGG 4 cut(s) 49, 215, 305, 491
SduI GDGCHC 1 cut(s) 45
Sfr303I CCGCGG 1 cut(s) 262
SgrBI CCGCGG 1 cut(s) 262
SinI GGWCC 2 cut(s) 217, 493
StyD4I CCNGG 4 cut(s) 47, 213, 303, 489
TaaI ACNGT 5 cut(s) 241, 296, 323, 341, 497
TaqI TCGA 5 cut(s) 18, 72, 105, 110, 198
TauI GCSGC 1 cut(s) 282
TfiI GAWTC 3 cut(s) 107, 150, 156
TseFI GTSAC 1 cut(s) 160
TseI GCWGC 1 cut(s) 300
Tsp45I GTSAC 1 cut(s) 160
TspDTI ATGAA 1 cut(s) 221
TspGWI ACGGA 3 cut(s) 14, 387, 492
VpaK11BI GGWCC 2 cut(s) 217, 493
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.