Prupe.7G178900_v2.0.a1

RNA binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp07
OG0004608
Physical Location & Seq
Reverse (-)
17610770 .. 17611184
415 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.7G178900.1

Sequence Viewer

Length: 207 bp
TTTTTGTTCAATCTCTTCATTCTAAGCTTCGTTGGAGGGCTCGCCTGGGCCACCAACAATGATGCACTGGAGAAGGCCTTTCTCCATTCGATCATCAACGACCGTGAGACTGGGAGGTCCAGGGGCTTCGGCTTCGTCACCTTCAGCAATGAGAACGCCATGAGAGATGCCCGAAGGCATGAACGACCAGAACTTCGACGGTCGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0001558 GO:0003674 GO:0003676 GO:0003723 GO:0003727 GO:0003729 GO:0003730 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005730 GO:0005737 GO:0006139 GO:0006396 GO:0006412 GO:0006417 GO:0006518 GO:0006725 GO:0006807 GO:0006950 GO:0006996 GO:0008150 GO:0008152 GO:0008187 GO:0008266 GO:0009058 GO:0009059 GO:0009266 GO:0009314 GO:0009409 GO:0009411 GO:0009416 GO:0009628 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009894 GO:0009895 GO:0009987 GO:0010033 GO:0010467 GO:0010468 GO:0010494 GO:0010556 GO:0010557 GO:0010558 GO:0010564 GO:0010604 GO:0010605 GO:0010608 GO:0010628 GO:0010629 GO:0014070 GO:0016043 GO:0016070 GO:0016441 GO:0016458 GO:0017148 GO:0019219 GO:0019222 GO:0019538 GO:0019843 GO:0022607 GO:0022613 GO:0022618 GO:0030308 GO:0030371 GO:0030425 GO:0031047 GO:0031050 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0031329 GO:0031330 GO:0031974 GO:0031981 GO:0032268 GO:0032269 GO:0032270 GO:0032991 GO:0033554 GO:0034063 GO:0034248 GO:0034249 GO:0034250 GO:0034622 GO:0034641 GO:0034645 GO:0035194 GO:0035195 GO:0035196 GO:0035770 GO:0036464 GO:0036477 GO:0040008 GO:0040029 GO:0042221 GO:0042995 GO:0043005 GO:0043021 GO:0043023 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043331 GO:0043487 GO:0043488 GO:0043489 GO:0043603 GO:0043604 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044463 GO:0044464 GO:0044877 GO:0045182 GO:0045727 GO:0045926 GO:0045934 GO:0046483 GO:0048255 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051171 GO:0051172 GO:0051173 GO:0051246 GO:0051247 GO:0051248 GO:0051252 GO:0051253 GO:0051716 GO:0051726 GO:0060255 GO:0061013 GO:0065003 GO:0065007 GO:0065008 GO:0070013 GO:0070181 GO:0070417 GO:0070887 GO:0070918 GO:0070925 GO:0071310 GO:0071359 GO:0071407 GO:0071704 GO:0071826 GO:0071840 GO:0080090 GO:0090304 GO:0097159 GO:0097447 GO:0097458 GO:0120025 GO:0120038 GO:1901360 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1901698 GO:1901699 GO:1901987 GO:1902369 GO:1902373 GO:1902806 GO:1903311 GO:1903312 GO:1990904 GO:2000112 GO:2000113
KEGG Pathways
Metabolic & Signaling
ko03013 ko03015 ko03018 map03013 map03015 map03018
Pfam Domains
Protein Families
RRM_1

Protein Analysis

69

Amino Acids

7.87

Weight (kDa)

10.47

Isoelectric Point (pI)

48.34

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 115
AcuI CTGAAG 1 cut(s) 127
AgsI TTSAA 1 cut(s) 10
AjnI CCWGG 2 cut(s) 44, 119
AluBI AGCT 1 cut(s) 27
AluI AGCT 1 cut(s) 27
Alw26I GTCTC 1 cut(s) 101
AoxI GGCC 2 cut(s) 48, 75
ArsI GACNNNNNNTTYG 1 cut(s) 177
AspS9I GGNCC 2 cut(s) 48, 117
AsuHPI GGTGA 1 cut(s) 130
AvaII GGWCC 1 cut(s) 117
BanII GRGCYC 1 cut(s) 42
BciT130I CCWGG 2 cut(s) 46, 121
BcoDI GTCTC 1 cut(s) 101
Bme1390I CCNGG 2 cut(s) 46, 121
Bme18I GGWCC 1 cut(s) 117
BmgT120I GGNCC 2 cut(s) 48, 117
BmrFI CCNGG 2 cut(s) 46, 121
BmrI ACTGGG 1 cut(s) 120
BmsI GCATC 2 cut(s) 52, 157
BmuI ACTGGG 1 cut(s) 120
BpmI CTGGAG 1 cut(s) 89
BsaJI CCNNGG 2 cut(s) 45, 120
Bse1I ACTGG 2 cut(s) 72, 115
Bse3DI GCAATG 1 cut(s) 154
BseBI CCWGG 2 cut(s) 46, 121
BseDI CCNNGG 2 cut(s) 45, 120
BseMI GCAATG 1 cut(s) 154
BseNI ACTGG 2 cut(s) 72, 115
Bsh1285I CGRYCG 2 cut(s) 103, 203
BshFI GGCC 2 cut(s) 50, 77
BsiEI CGRYCG 2 cut(s) 103, 203
BsmAI GTCTC 1 cut(s) 101
BsnI GGCC 2 cut(s) 50, 77
Bsp1286I GDGCHC 1 cut(s) 42
Bsp143I GATC 1 cut(s) 90
BspANI GGCC 2 cut(s) 50, 77
BsrDI GCAATG 1 cut(s) 154
BsrI ACTGG 2 cut(s) 72, 115
BssECI CCNNGG 2 cut(s) 45, 120
BssMI GATC 1 cut(s) 90
Bst2UI CCWGG 2 cut(s) 46, 121
Bst4CI ACNGT 2 cut(s) 104, 201
Bst6I CTCTTC 1 cut(s) 20
BstC8I GCNNGC 1 cut(s) 42
BstDEI CTNAG 1 cut(s) 23
BstKTI GATC 1 cut(s) 93
BstMAI GTCTC 1 cut(s) 101
BstMBI GATC 1 cut(s) 90
BstMCI CGRYCG 2 cut(s) 103, 203
BstNI CCWGG 2 cut(s) 46, 121
BstSCI CCNGG 2 cut(s) 44, 119
BsuRI GGCC 2 cut(s) 50, 77
BtsIMutI CAGTG 1 cut(s) 65
Cac8I GCNNGC 1 cut(s) 42
Cfr13I GGNCC 2 cut(s) 48, 117
CviAII CATG 2 cut(s) 160, 179
CviJI RGCY 6 cut(s) 27, 40, 50, 77, 126, 132
CviKI_1 RGCY 6 cut(s) 27, 40, 50, 77, 126, 132
DdeI CTNAG 1 cut(s) 23
DpnI GATC 1 cut(s) 92
DpnII GATC 1 cut(s) 90
DrdI GACNNNNNNGTC 1 cut(s) 115
DseDI GACNNNNNNGTC 1 cut(s) 115
Eam1104I CTCTTC 1 cut(s) 20
EarI CTCTTC 1 cut(s) 20
Eco147I AGGCCT 1 cut(s) 77
Eco24I GRGCYC 1 cut(s) 42
Eco47I GGWCC 1 cut(s) 117
Eco57I CTGAAG 1 cut(s) 127
EcoRII CCWGG 2 cut(s) 44, 119
EcoT38I GRGCYC 1 cut(s) 42
FaeI CATG 2 cut(s) 163, 182
FaiI YATR 2 cut(s) 161, 180
FatI CATG 2 cut(s) 159, 178
FriOI GRGCYC 1 cut(s) 42
GsuI CTGGAG 1 cut(s) 89
HaeIII GGCC 2 cut(s) 50, 77
Hin1II CATG 2 cut(s) 163, 182
HindIII AAGCTT 1 cut(s) 25
HphI GGTGA 1 cut(s) 130
Hpy99I CGWCG 1 cut(s) 201
HpyAV CCTTC 3 cut(s) 67, 151, 168
HpyCH4III ACNGT 2 cut(s) 104, 201
HpyCH4V TGCA 1 cut(s) 65
HpyF3I CTNAG 1 cut(s) 23
Hsp92II CATG 2 cut(s) 163, 182
Kzo9I GATC 1 cut(s) 90
LpnPI CCDG 7 cut(s) 31, 53, 58, 96, 106, 133, 201
LweI GCATC 2 cut(s) 52, 157
MaeIII GTNAC 1 cut(s) 136
MalI GATC 1 cut(s) 92
MboI GATC 1 cut(s) 90
MboII GAAGA 1 cut(s) 7
MhlI GDGCHC 1 cut(s) 42
MmeI TCCRAC 1 cut(s) 13
MnlI CCTC 2 cut(s) 29, 108
MspR9I CCNGG 2 cut(s) 46, 121
MvaI CCWGG 2 cut(s) 46, 121
NdeII GATC 1 cut(s) 90
NlaIII CATG 2 cut(s) 163, 182
NmuCI GTSAC 1 cut(s) 136
PceI AGGCCT 1 cut(s) 77
Psp6I CCWGG 2 cut(s) 44, 119
PspGI CCWGG 2 cut(s) 44, 119
PspPI GGNCC 2 cut(s) 48, 117
Sau3AI GATC 1 cut(s) 90
Sau96I GGNCC 2 cut(s) 48, 117
ScrFI CCNGG 2 cut(s) 46, 121
SduI GDGCHC 1 cut(s) 42
SetI ASST 3 cut(s) 29, 119, 143
SfaNI GCATC 2 cut(s) 52, 157
SinI GGWCC 1 cut(s) 117
SseBI AGGCCT 1 cut(s) 77
StuI AGGCCT 1 cut(s) 77
StyD4I CCNGG 2 cut(s) 44, 119
TaaI ACNGT 2 cut(s) 104, 201
TaqI TCGA 2 cut(s) 89, 196
TscAI CASTG 1 cut(s) 72
TseFI GTSAC 1 cut(s) 136
Tsp45I GTSAC 1 cut(s) 136
TspDTI ATGAA 2 cut(s) 7, 195
TspRI CASTG 1 cut(s) 72
VpaK11BI GGWCC 1 cut(s) 117
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.