pycom10g05900

RNA recognition motif

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr10
OG0004608
Physical Location & Seq
Reverse (-)
6579313 .. 6580651
1339 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom10g05900.2

Sequence Viewer

Length: 894 bp
ATGCTCGGCGGAGATACCAACAGCTGTGGGTTTCCGCAAACCGAAAGACACGACTCTGTCCTTTCCCCGTTTGGCAACGGCGATAACACTCCCCACCAAACAAGAGATAAAAATATCCTCAGCGTAAAACAAACCAAAAACGACGACGTGTATATAATTTATTCGTATGGTGAAATTGTAAAACGCGTAGCCAAACGCGCCGTGCTTGGACCTTTGAACCCTGGTAACCAAACACCATGGAAATGGTTAACCCTGGTCGAGGGTGCCCGAGGCCCTATATTAACGAGGGTTCGGGGCCTGCTGACCCGCGTGCTCTCTTGTTCTGTTGTTCTTTCCCTAAAATTCGAGTCCTTTTTGTCACTAGGGTTACTGGTAGCCATGGCCTCTGCCGAGATCGAGTTCCGTTGCTTCGTCGGAGGGCTCGCCTGGGCCACCGACAATGAGGCGCTGGAGAGGGCCTTTTCCCAGTATGGTGAGATCATCGAATCGAAGATCATCAACGACCGTGAGACTGGGAGGTCCAGGGGCTTCGGCTTCGTCACCTTCGGCAGCGAGCAGGCGATGAGGGACGCGATCGAAGGCATGAACGGCCAGAACCTCGACGGCCGCAACATCACCGTCAACGAGGCTCAGTCTCGCGGATCCGGTGGTGGCGGTGGCGGAGGTGGCTACAGCCGCGGAGGCGGCGGAGGTGGATATGGAGGTGGTGGCGGCTACGGAGGTGGCGGTCGCCGTGAAGGCGGAGGTGGTGGGTACAGCCGTGGAGGCGGTGGCGGTGGATACGGAGGTGGTGGTGGTGGTCGTCGTGAGGGTGGTTATGGAGGCGGTGAGGGTGGCGGTGCTCCCTACTCCAGAGGAGGCGGTGGCTCTGAAGGCGGCAGCTGGAGGAGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03040 map03040
Pfam Domains
Protein Families
RRM_1

Protein Analysis

298

Amino Acids

30.49

Weight (kDa)

8.95

Isoelectric Point (pI)

53.37

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 517
AccB1I GGYRCC 1 cut(s) 263
AccII CGCG 6 cut(s) 186, 198, 309, 572, 639, 678
AclWI GGATC 2 cut(s) 636, 649
AcoI YGGCCR 2 cut(s) 589, 604
AcsI RAATTY 1 cut(s) 341
AcuI CTGAAG 1 cut(s) 891
AfaI GTAC 1 cut(s) 755
AfiI CCNNNNNNNGG 1 cut(s) 259
AflIII ACRYGT 2 cut(s) 147, 184
AgsI TTSAA 1 cut(s) 217
AjiI CACGTC 1 cut(s) 148
AjnI CCWGG 4 cut(s) 220, 252, 425, 521
AluBI AGCT 2 cut(s) 24, 882
AluI AGCT 2 cut(s) 24, 882
Alw21I GWGCWC 2 cut(s) 315, 844
Alw26I GTCTC 2 cut(s) 503, 639
AlwI GGATC 2 cut(s) 636, 649
Ama87I CYCGRG 1 cut(s) 267
AoxI GGCC 7 cut(s) 271, 295, 381, 429, 456, 589, 604
ApeKI GCWGC 2 cut(s) 549, 879
ApoI RAATTY 1 cut(s) 341
AspLEI GCGC 2 cut(s) 200, 448
AspS9I GGNCC 6 cut(s) 209, 272, 295, 429, 456, 519
AsuHPI GGTGA 5 cut(s) 182, 485, 532, 607, 839
AvaI CYCGRG 1 cut(s) 267
AvaII GGWCC 2 cut(s) 209, 519
BaeGI GKGCMC 1 cut(s) 268
BaeI ACNNNNGTAYC 4 cut(s) 745, 772, 778, 805
BamHI GGATCC 1 cut(s) 641
BanI GGYRCC 1 cut(s) 263
BanII GRGCYC 1 cut(s) 423
Bbv12I GWGCWC 2 cut(s) 315, 844
BbvCI CCTCAGC 1 cut(s) 119
BbvI GCAGC 1 cut(s) 561
BceAI ACGGC 6 cut(s) 94, 185, 604, 619, 717, 744
BciT130I CCWGG 4 cut(s) 222, 254, 427, 523
BciVI GTATCC 1 cut(s) 773
BcoDI GTCTC 2 cut(s) 503, 639
BfaI CTAG 1 cut(s) 362
BfmI CTRYAG 1 cut(s) 670
BfoI RGCGCY 1 cut(s) 449
BfuI GTATCC 1 cut(s) 773
BglI GCCNNNNNGGC 3 cut(s) 681, 738, 765
BisI GCNGC 7 cut(s) 550, 607, 676, 685, 712, 877, 880
BlsI GCNGC 7 cut(s) 551, 608, 677, 686, 713, 878, 881
Bme1390I CCNGG 4 cut(s) 222, 254, 427, 523
Bme18I GGWCC 2 cut(s) 209, 519
BmeT110I CYCGRG 1 cut(s) 267
BmgBI CACGTC 1 cut(s) 148
BmgT120I GGNCC 6 cut(s) 209, 272, 295, 429, 456, 519
BmiI GGNNCC 3 cut(s) 265, 296, 643
BmrFI CCNGG 4 cut(s) 222, 254, 427, 523
BmrI ACTGGG 2 cut(s) 460, 522
BmuI ACTGGG 2 cut(s) 460, 522
BpmI CTGGAG 2 cut(s) 470, 835
Bpu10I CCTNAGC 1 cut(s) 119
BsaJI CCNNGG 9 cut(s) 220, 236, 252, 268, 378, 426, 522, 676, 760
BsaWI WCCGGW 1 cut(s) 644
Bsc4I CCNNNNNNNGG 1 cut(s) 259
Bse1I ACTGG 3 cut(s) 375, 466, 517
BseBI CCWGG 4 cut(s) 222, 254, 427, 523
BseDI CCNNGG 9 cut(s) 220, 236, 252, 268, 378, 426, 522, 676, 760
BseLI CCNNNNNNNGG 1 cut(s) 259
BseMII CTCAG 2 cut(s) 133, 644
BseNI ACTGG 3 cut(s) 375, 466, 517
BseRI GAGGAG 1 cut(s) 870
BseSI GKGCMC 1 cut(s) 268
BseX3I CGGCCG 1 cut(s) 604
BseXI GCAGC 1 cut(s) 561
Bsh1236I CGCG 6 cut(s) 186, 198, 309, 572, 639, 678
Bsh1285I CGRYCG 4 cut(s) 505, 576, 607, 730
BshFI GGCC 7 cut(s) 273, 297, 383, 431, 458, 591, 606
BshNI GGYRCC 1 cut(s) 263
BsiEI CGRYCG 4 cut(s) 505, 576, 607, 730
BsiHKAI GWGCWC 2 cut(s) 315, 844
BsiHKCI CYCGRG 1 cut(s) 267
BsiSI CCGG 1 cut(s) 645
BslFI GGGAC 1 cut(s) 581
BslI CCNNNNNNNGG 1 cut(s) 259
BsmAI GTCTC 2 cut(s) 503, 639
BsmFI GGGAC 1 cut(s) 581
BsnI GGCC 7 cut(s) 273, 297, 383, 431, 458, 591, 606
BsoBI CYCGRG 1 cut(s) 267
Bsp1286I GDGCHC 4 cut(s) 268, 315, 423, 844
Bsp143I GATC 5 cut(s) 393, 477, 492, 573, 641
Bsp19I CCATGG 2 cut(s) 236, 378
BspANI GGCC 7 cut(s) 273, 297, 383, 431, 458, 591, 606
BspCNI CTCAG 2 cut(s) 132, 643
BspFNI CGCG 6 cut(s) 186, 198, 309, 572, 639, 678
BspLI GGNNCC 3 cut(s) 265, 296, 643
BspPI GGATC 2 cut(s) 636, 649
BspT107I GGYRCC 1 cut(s) 263
BsrI ACTGG 3 cut(s) 375, 466, 517
BssECI CCNNGG 9 cut(s) 220, 236, 252, 268, 378, 426, 522, 676, 760
BssMI GATC 5 cut(s) 393, 477, 492, 573, 641
BssT1I CCWWGG 2 cut(s) 236, 378
Bst2UI CCWGG 4 cut(s) 222, 254, 427, 523
Bst4CI ACNGT 2 cut(s) 506, 619
BstC8I GCNNGC 5 cut(s) 299, 311, 423, 554, 558
BstDEI CTNAG 2 cut(s) 119, 630
BstDSI CCRYGG 4 cut(s) 236, 378, 676, 760
BstEII GGTNACC 1 cut(s) 224
BstENI CCTNNNNNAGG 1 cut(s) 257
BstFNI CGCG 6 cut(s) 186, 198, 309, 572, 639, 678
BstH2I RGCGCY 1 cut(s) 449
BstHHI GCGC 2 cut(s) 200, 448
BstKTI GATC 5 cut(s) 396, 480, 495, 576, 644
BstMAI GTCTC 2 cut(s) 503, 639
BstMBI GATC 5 cut(s) 393, 477, 492, 573, 641
BstMCI CGRYCG 4 cut(s) 505, 576, 607, 730
BstMWI GCNNNNNNNGC 9 cut(s) 197, 588, 666, 675, 681, 684, 738, 765, 873
BstNI CCWGG 4 cut(s) 222, 254, 427, 523
BstPI GGTNACC 1 cut(s) 224
BstSCI CCNGG 4 cut(s) 220, 252, 425, 521
BstSFI CTRYAG 1 cut(s) 670
BstSLI GKGCMC 1 cut(s) 268
BstUI CGCG 6 cut(s) 186, 198, 309, 572, 639, 678
BstV1I GCAGC 1 cut(s) 561
BstX2I RGATCY 1 cut(s) 641
BstXI CCANNNNNNTGG 1 cut(s) 243
BstYI RGATCY 1 cut(s) 641
BstZI CGGCCG 1 cut(s) 604
BsuI GTATCC 1 cut(s) 773
BsuRI GGCC 7 cut(s) 273, 297, 383, 431, 458, 591, 606
BtgI CCRYGG 4 cut(s) 236, 378, 676, 760
BtgZI GCGATG 1 cut(s) 575
BtrI CACGTC 1 cut(s) 148
Cac8I GCNNGC 5 cut(s) 299, 311, 423, 554, 558
CfoI GCGC 2 cut(s) 200, 448
Cfr13I GGNCC 6 cut(s) 209, 272, 295, 429, 456, 519
Cfr42I CCGCGG 1 cut(s) 679
CseI GACGC 1 cut(s) 578
Csp6I GTAC 1 cut(s) 754
CspCI CAANNNNNGTGG 2 cut(s) 7, 42
CviAII CATG 3 cut(s) 237, 379, 583
CviQI GTAC 1 cut(s) 754
DdeI CTNAG 2 cut(s) 119, 630
DpnI GATC 5 cut(s) 395, 479, 494, 575, 643
DpnII GATC 5 cut(s) 393, 477, 492, 573, 641
DrdI GACNNNNNNGTC 1 cut(s) 517
DseDI GACNNNNNNGTC 1 cut(s) 517
EaeI YGGCCR 2 cut(s) 589, 604
EagI CGGCCG 1 cut(s) 604
EciI GGCGGA 4 cut(s) 24, 675, 702, 756
EclXI CGGCCG 1 cut(s) 604
Eco130I CCWWGG 2 cut(s) 236, 378
Eco24I GRGCYC 1 cut(s) 423
Eco47I GGWCC 2 cut(s) 209, 519
Eco52I CGGCCG 1 cut(s) 604
Eco57I CTGAAG 1 cut(s) 891
Eco88I CYCGRG 1 cut(s) 267
Eco91I GGTNACC 1 cut(s) 224
EcoNI CCTNNNNNAGG 1 cut(s) 257
EcoO109I RGGNCCY 3 cut(s) 272, 295, 456
EcoO65I GGTNACC 1 cut(s) 224
EcoRII CCWGG 4 cut(s) 220, 252, 425, 521
EcoT14I CCWWGG 2 cut(s) 236, 378
EcoT38I GRGCYC 1 cut(s) 423
ErhI CCWWGG 2 cut(s) 236, 378
FaeI CATG 3 cut(s) 240, 382, 586
FaqI GGGAC 1 cut(s) 581
FatI CATG 3 cut(s) 236, 378, 582
FauI CCCGC 1 cut(s) 314
Fnu4HI GCNGC 7 cut(s) 550, 607, 676, 685, 712, 877, 880
FriOI GRGCYC 1 cut(s) 423
Fsp4HI GCNGC 7 cut(s) 550, 607, 676, 685, 712, 877, 880
FspBI CTAG 1 cut(s) 362
GlaI GCGC 2 cut(s) 199, 447
GluI GCNGC 7 cut(s) 550, 607, 676, 685, 712, 877, 880
GsuI CTGGAG 2 cut(s) 470, 835
HaeII RGCGCY 1 cut(s) 449
HaeIII GGCC 7 cut(s) 273, 297, 383, 431, 458, 591, 606
HapII CCGG 1 cut(s) 645
HgaI GACGC 1 cut(s) 578
HhaI GCGC 2 cut(s) 200, 448
Hin1II CATG 3 cut(s) 240, 382, 586
Hin6I GCGC 2 cut(s) 198, 446
HinP1I GCGC 2 cut(s) 198, 446
HincII GTYRAC 2 cut(s) 249, 622
HindII GTYRAC 2 cut(s) 249, 622
HinfI GANTC 3 cut(s) 53, 347, 485
HpaI GTTAAC 1 cut(s) 249
HpaII CCGG 1 cut(s) 645
HphI GGTGA 5 cut(s) 182, 485, 532, 607, 839
Hpy166II GTNNAC 2 cut(s) 249, 622
Hpy188I TCNGA 2 cut(s) 416, 871
Hpy188III TCNNGA 2 cut(s) 806, 852
Hpy8I GTNNAC 2 cut(s) 249, 622
Hpy99I CGWCG 5 cut(s) 146, 149, 416, 605, 807
HpyAV CCTTC 4 cut(s) 553, 572, 731, 866
HpyCH4III ACNGT 2 cut(s) 506, 619
HpyCH4IV ACGT 1 cut(s) 147
HpyF10VI GCNNNNNNNGC 9 cut(s) 197, 588, 666, 675, 681, 684, 738, 765, 873
HpyF3I CTNAG 2 cut(s) 119, 630
HpySE526I ACGT 1 cut(s) 147
Hsp92II CATG 3 cut(s) 240, 382, 586
HspAI GCGC 2 cut(s) 198, 446
KspAI GTTAAC 1 cut(s) 249
KspI CCGCGG 1 cut(s) 679
Kzo9I GATC 5 cut(s) 393, 477, 492, 573, 641
LmnI GCTCC 1 cut(s) 847
Lsp1109I GCAGC 1 cut(s) 561
MaeI CTAG 1 cut(s) 362
MaeII ACGT 1 cut(s) 147
MaeIII GTNAC 4 cut(s) 224, 357, 366, 538
MalI GATC 5 cut(s) 395, 479, 494, 575, 643
MboI GATC 5 cut(s) 393, 477, 492, 573, 641
MboII GAAGA 1 cut(s) 502
MflI RGATCY 1 cut(s) 641
MhlI GDGCHC 4 cut(s) 268, 315, 423, 844
MluCI AATT 3 cut(s) 156, 174, 341
MluI ACGCGT 1 cut(s) 184
MlyI GAGTC 2 cut(s) 47, 356
MmeI TCCRAC 1 cut(s) 394
MseI TTAA 2 cut(s) 248, 281
MslI CAYNNNNRTG 1 cut(s) 241
MspA1I CMGCKG 3 cut(s) 24, 678, 882
MspI CCGG 1 cut(s) 645
MspR9I CCNGG 4 cut(s) 222, 254, 427, 523
MvaI CCWGG 4 cut(s) 222, 254, 427, 523
MvnI CGCG 6 cut(s) 186, 198, 309, 572, 639, 678
MwoI GCNNNNNNNGC 9 cut(s) 197, 588, 666, 675, 681, 684, 738, 765, 873
NcoI CCATGG 2 cut(s) 236, 378
NdeII GATC 5 cut(s) 393, 477, 492, 573, 641
NlaIII CATG 3 cut(s) 240, 382, 586
NlaIV GGNNCC 3 cut(s) 265, 296, 643
NmeAIII GCCGAG 1 cut(s) 415
NmuCI GTSAC 2 cut(s) 357, 538
PfeI GAWTC 1 cut(s) 485
PflFI GACNNNGTC 1 cut(s) 56
PkrI GCNGC 7 cut(s) 551, 608, 677, 686, 713, 878, 881
Ple19I CGATCG 1 cut(s) 576
PleI GAGTC 2 cut(s) 47, 355
PpsI GAGTC 2 cut(s) 47, 355
Psp6I CCWGG 4 cut(s) 220, 252, 425, 521
PspEI GGTNACC 1 cut(s) 224
PspGI CCWGG 4 cut(s) 220, 252, 425, 521
PspN4I GGNNCC 3 cut(s) 265, 296, 643
PspPI GGNCC 6 cut(s) 209, 272, 295, 429, 456, 519
PsuI RGATCY 1 cut(s) 641
PsyI GACNNNGTC 1 cut(s) 56
PvuI CGATCG 1 cut(s) 576
PvuII CAGCTG 2 cut(s) 24, 882
RsaI GTAC 1 cut(s) 755
RsaNI GTAC 1 cut(s) 754
RseI CAYNNNNRTG 1 cut(s) 241
SacII CCGCGG 1 cut(s) 679
SaqAI TTAA 2 cut(s) 248, 281
SatI GCNGC 7 cut(s) 550, 607, 676, 685, 712, 877, 880
Sau3AI GATC 5 cut(s) 393, 477, 492, 573, 641
Sau96I GGNCC 6 cut(s) 209, 272, 295, 429, 456, 519
SchI GAGTC 2 cut(s) 47, 356
ScrFI CCNGG 4 cut(s) 222, 254, 427, 523
SduI GDGCHC 4 cut(s) 268, 315, 423, 844
SfcI CTRYAG 1 cut(s) 670
Sfr303I CCGCGG 1 cut(s) 679
SgrBI CCGCGG 1 cut(s) 679
SinI GGWCC 2 cut(s) 209, 519
SmiMI CAYNNNNRTG 1 cut(s) 241
Sse9I AATT 3 cut(s) 156, 174, 341
SspMI CTAG 1 cut(s) 362
StyD4I CCNGG 4 cut(s) 220, 252, 425, 521
StyI CCWWGG 2 cut(s) 236, 378
TaaI ACNGT 2 cut(s) 506, 619
TaiI ACGT 1 cut(s) 150
TaqI TCGA 7 cut(s) 258, 345, 396, 483, 488, 576, 600
TasI AATT 3 cut(s) 156, 174, 341
TauI GCSGC 5 cut(s) 609, 678, 687, 714, 879
TfiI GAWTC 1 cut(s) 485
Tru1I TTAA 2 cut(s) 248, 281
Tru9I TTAA 2 cut(s) 248, 281
TseFI GTSAC 2 cut(s) 357, 538
TseI GCWGC 2 cut(s) 549, 879
Tsp45I GTSAC 2 cut(s) 357, 538
TspDTI ATGAA 1 cut(s) 599
TspGWI ACGGA 3 cut(s) 392, 732, 798
Tth111I GACNNNGTC 1 cut(s) 56
VpaK11BI GGWCC 2 cut(s) 209, 519
XagI CCTNNNNNAGG 1 cut(s) 257
XapI RAATTY 1 cut(s) 341
XspI CTAG 1 cut(s) 362
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.