Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0004608

Physical Location & Seq

Genomic Coordinates Forward (+)

19677852 .. 19679674

Gene Structure 1823 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ23722

Sequence Viewer

CDS Protein Promoter (2k)

Length: 522 bp

ATGGCCTCTGCCGAGATCGAGTTCCGTTGCTTCGTCGGAGGGCTCGCCTGGGCCACCGACAACGAGGCCCTCGAAAGGGCCTTTGCTCCTTTTGGCGAGATCATCGAATCGAAGATCATCAACGACCGCGAGACCGGAAGGTCTAGGGGATTCGGATTCGTCACCTTCAGCAACGAGAAGGCCATGAGGGACGCGATCGAAGGCATGAACGGCCAGGACCTTGACGGCCGTAACATCACCGTCAACGAGGCTCAGTCCCGCGGAAGCGGTGGCGGAGGCGGCGGTGGTGGATACGGTGGCAGCCGGGGAGGCGGTGGCTACGGTTCTGGCGGCGGCGGTTACGGTGGCCGTCGTGAAGGCGGAGGCGGTGGCTACGGAAGTGGCGGTGGAGCTATGGAAGCGGTGGTGGAGGTGGCTACGGAGGTGGCGGCCGGGACCGTGGATCTGATGGCGGCAGCTGGAGGAGTTAGATCTGTTAGGGTTTGGTTAGTGGGGTCTGGATCTCGTTGGTTATGGTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

RRM_1

Protein Analysis

173

Amino Acids

17.53

Weight (kDa)

4.96

Isoelectric Point (pI)

55.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	11 - 80	3.1e-22	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0004608)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G21660 AT2G21660
fragaria_vesca	FvH4_2g08880 FvH4_2g08880 FvH4_2g08880 FvH4_2g08880
malus_domestica	MD10G1075500.v1.1
prunus_persica	Prupe.1G176300_v2.0.a1 Prupe.2G011900_v2.0.a1 Prupe.3G163600_v2.0.a1 Prupe.5G141500_v2.0.a1 Prupe.7G178900_v2.0.a1 Prupe.8G096400_v2.0.a1 Prupe.8G096400_v2.0.a1 Prupe.8G096400_v2.0.a1 Prupe.8G096400_v2.0.a1 Prupe.8G096400_v2.0.a1 Prupe.8G096400_v2.0.a1 Prupe.8G096400_v2.0.a1
pyrus_communis	pycom05g05700 pycom10g05900
rosa_chinensis	RchiOBHm_Chr6g0264491 RchiOBHm_Chr7g0233551
rosa_multiflora	Rmu_sc0004946.1_g000027
rosa_roxburghii	Rroxscaffold_176G00431830
rosa_rugosa	Rorug06G0013300
rosa_samantha	Rh6AG132700 Rh6BG130100 Rh6CG128400 Rh6DG115500
rosa_wichuraiana	Rw0G020850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	139
AccII	CGCG	3 cut(s)	129, 194, 261
AclWI	GGATC	2 cut(s)	450, 508
AcoI	YGGCCR	4 cut(s)	211, 226, 346, 429
AcuI	CTGAAG	1 cut(s)	151
AfiI	CCNNNNNNNGG	2 cut(s)	75, 76
AjnI	CCWGG	2 cut(s)	47, 213
AluBI	AGCT	2 cut(s)	392, 458
AluI	AGCT	2 cut(s)	392, 458
Alw26I	GTCTC	1 cut(s)	125
AlwI	GGATC	2 cut(s)	450, 508
AoxI	GGCC	9 cut(s)	3, 51, 66, 78, 180, 211, 226, 346, 429
ApeKI	GCWGC	2 cut(s)	300, 455
AspS9I	GGNCC	5 cut(s)	51, 67, 78, 217, 435
AsuC2I	CCSGG	2 cut(s)	305, 433
AsuHPI	GGTGA	2 cut(s)	154, 229
AvaII	GGWCC	2 cut(s)	217, 435
BanII	GRGCYC	1 cut(s)	45
BbvI	GCAGC	2 cut(s)	312, 467
BccI	CCATC	1 cut(s)	442
BceAI	ACGGC	4 cut(s)	213, 226, 241, 333
BciT130I	CCWGG	2 cut(s)	49, 215
BciVI	GTATCC	1 cut(s)	284
BcnI	CCSGG	2 cut(s)	305, 433
BcoDI	GTCTC	1 cut(s)	125
BfaI	CTAG	1 cut(s)	144
BfuI	GTATCC	1 cut(s)	284
BglI	GCCNNNNNGGC	1 cut(s)	309
BglII	AGATCT	1 cut(s)	470
BisI	GCNGC	7 cut(s)	280, 301, 331, 334, 429, 453, 456
BlsI	GCNGC	7 cut(s)	281, 302, 332, 335, 430, 454, 457
Bme1390I	CCNGG	4 cut(s)	49, 215, 305, 433
Bme18I	GGWCC	2 cut(s)	217, 435
BmgT120I	GGNCC	5 cut(s)	51, 67, 78, 217, 435
BmiI	GGNNCC	1 cut(s)	436
BmrFI	CCNGG	4 cut(s)	49, 215, 305, 433
BpmI	CTGGAG	1 cut(s)	480
BpuMI	CCSGG	2 cut(s)	305, 433
BsaI	GGTCTC	1 cut(s)	125
BsaJI	CCNNGG	4 cut(s)	48, 259, 304, 438
BsaWI	WCCGGW	1 cut(s)	134
Bsc4I	CCNNNNNNNGG	2 cut(s)	75, 76
BseBI	CCWGG	2 cut(s)	49, 215
BseDI	CCNNGG	4 cut(s)	48, 259, 304, 438
BseLI	CCNNNNNNNGG	2 cut(s)	75, 76
BseMII	CTCAG	1 cut(s)	266
BseRI	GAGGAG	1 cut(s)	477
BseX3I	CGGCCG	2 cut(s)	226, 429
BseXI	GCAGC	2 cut(s)	312, 467
Bsh1236I	CGCG	3 cut(s)	129, 194, 261
Bsh1285I	CGRYCG	4 cut(s)	127, 198, 229, 432
BshFI	GGCC	9 cut(s)	5, 53, 68, 80, 182, 213, 228, 348, 431
BsiEI	CGRYCG	4 cut(s)	127, 198, 229, 432
BsiSI	CCGG	3 cut(s)	135, 304, 432
BslFI	GGGAC	3 cut(s)	203, 241, 448
BslI	CCNNNNNNNGG	2 cut(s)	75, 76
BsmAI	GTCTC	1 cut(s)	125
BsmFI	GGGAC	3 cut(s)	203, 241, 448
BsnI	GGCC	9 cut(s)	5, 53, 68, 80, 182, 213, 228, 348, 431
Bso31I	GGTCTC	1 cut(s)	125
Bsp1286I	GDGCHC	1 cut(s)	45
Bsp143I	GATC	7 cut(s)	15, 99, 114, 195, 442, 470, 500
BspANI	GGCC	9 cut(s)	5, 53, 68, 80, 182, 213, 228, 348, 431
BspCNI	CTCAG	1 cut(s)	265
BspFNI	CGCG	3 cut(s)	129, 194, 261
BspLI	GGNNCC	1 cut(s)	436
BspPI	GGATC	2 cut(s)	450, 508
BspTNI	GGTCTC	1 cut(s)	125
BssECI	CCNNGG	4 cut(s)	48, 259, 304, 438
BssMI	GATC	7 cut(s)	15, 99, 114, 195, 442, 470, 500
Bst2UI	CCWGG	2 cut(s)	49, 215
Bst4CI	ACNGT	5 cut(s)	241, 296, 323, 344, 439
BstC8I	GCNNGC	1 cut(s)	45
BstDEI	CTNAG	1 cut(s)	252
BstDSI	CCRYGG	2 cut(s)	259, 438
BstFNI	CGCG	3 cut(s)	129, 194, 261
BstKTI	GATC	7 cut(s)	18, 102, 117, 198, 445, 473, 503
BstMAI	GTCTC	1 cut(s)	125
BstMBI	GATC	7 cut(s)	15, 99, 114, 195, 442, 470, 500
BstMCI	CGRYCG	4 cut(s)	127, 198, 229, 432
BstMWI	GCNNNNNNNGC	4 cut(s)	210, 279, 309, 398
BstNI	CCWGG	2 cut(s)	49, 215
BstSCI	CCNGG	4 cut(s)	47, 213, 303, 431
BstUI	CGCG	3 cut(s)	129, 194, 261
BstV1I	GCAGC	2 cut(s)	312, 467
BstX2I	RGATCY	3 cut(s)	442, 470, 500
BstYI	RGATCY	3 cut(s)	442, 470, 500
BstZI	CGGCCG	2 cut(s)	226, 429
BsuI	GTATCC	1 cut(s)	284
BsuRI	GGCC	9 cut(s)	5, 53, 68, 80, 182, 213, 228, 348, 431
BtgI	CCRYGG	2 cut(s)	259, 438
Cac8I	GCNNGC	1 cut(s)	45
Cfr13I	GGNCC	5 cut(s)	51, 67, 78, 217, 435
Cfr42I	CCGCGG	1 cut(s)	262
CseI	GACGC	1 cut(s)	200
CviAII	CATG	2 cut(s)	184, 205
DdeI	CTNAG	1 cut(s)	252
DpnI	GATC	7 cut(s)	17, 101, 116, 197, 444, 472, 502
DpnII	GATC	7 cut(s)	15, 99, 114, 195, 442, 470, 500
DrdI	GACNNNNNNGTC	1 cut(s)	139
DseDI	GACNNNNNNGTC	1 cut(s)	139
EaeI	YGGCCR	4 cut(s)	211, 226, 346, 429
EagI	CGGCCG	2 cut(s)	226, 429
EciI	GGCGGA	2 cut(s)	288, 375
EclXI	CGGCCG	2 cut(s)	226, 429
Eco24I	GRGCYC	1 cut(s)	45
Eco31I	GGTCTC	1 cut(s)	125
Eco47I	GGWCC	2 cut(s)	217, 435
Eco52I	CGGCCG	2 cut(s)	226, 429
Eco57I	CTGAAG	1 cut(s)	151
EcoO109I	RGGNCCY	3 cut(s)	67, 78, 217
EcoRII	CCWGG	2 cut(s)	47, 213
EcoT38I	GRGCYC	1 cut(s)	45
FaeI	CATG	2 cut(s)	187, 208
FaiI	YATR	4 cut(s)	185, 206, 395, 514
FaqI	GGGAC	3 cut(s)	203, 241, 448
FatI	CATG	2 cut(s)	183, 204
FauI	CCCGC	1 cut(s)	266
Fnu4HI	GCNGC	7 cut(s)	280, 301, 331, 334, 429, 453, 456
FriOI	GRGCYC	1 cut(s)	45
Fsp4HI	GCNGC	7 cut(s)	280, 301, 331, 334, 429, 453, 456
FspBI	CTAG	1 cut(s)	144
GluI	GCNGC	7 cut(s)	280, 301, 331, 334, 429, 453, 456
GsuI	CTGGAG	1 cut(s)	480
HaeIII	GGCC	9 cut(s)	5, 53, 68, 80, 182, 213, 228, 348, 431
HapII	CCGG	3 cut(s)	135, 304, 432
HgaI	GACGC	1 cut(s)	200
Hin1II	CATG	2 cut(s)	187, 208
HincII	GTYRAC	1 cut(s)	244
HindII	GTYRAC	1 cut(s)	244
HinfI	GANTC	3 cut(s)	107, 150, 156
HpaII	CCGG	3 cut(s)	135, 304, 432
HphI	GGTGA	2 cut(s)	154, 229
Hpy166II	GTNNAC	1 cut(s)	244
Hpy188I	TCNGA	3 cut(s)	38, 155, 447
Hpy188III	TCNNGA	2 cut(s)	353, 498
Hpy8I	GTNNAC	1 cut(s)	244
Hpy99I	CGWCG	2 cut(s)	38, 354
HpyAV	CCTTC	5 cut(s)	132, 172, 175, 194, 350
HpyCH4III	ACNGT	5 cut(s)	241, 296, 323, 344, 439
HpyF10VI	GCNNNNNNNGC	4 cut(s)	210, 279, 309, 398
HpyF3I	CTNAG	1 cut(s)	252
Hsp92II	CATG	2 cut(s)	187, 208
KspI	CCGCGG	1 cut(s)	262
Kzo9I	GATC	7 cut(s)	15, 99, 114, 195, 442, 470, 500
LmnI	GCTCC	2 cut(s)	91, 389
Lsp1109I	GCAGC	2 cut(s)	312, 467
MaeI	CTAG	1 cut(s)	144
MaeIII	GTNAC	3 cut(s)	160, 230, 338
MalI	GATC	7 cut(s)	17, 101, 116, 197, 444, 472, 502
MboI	GATC	7 cut(s)	15, 99, 114, 195, 442, 470, 500
MboII	GAAGA	1 cut(s)	124
MflI	RGATCY	3 cut(s)	442, 470, 500
MhlI	GDGCHC	1 cut(s)	45
MmeI	TCCRAC	1 cut(s)	16
MspA1I	CMGCKG	2 cut(s)	261, 458
MspI	CCGG	3 cut(s)	135, 304, 432
MspR9I	CCNGG	4 cut(s)	49, 215, 305, 433
MvaI	CCWGG	2 cut(s)	49, 215
MvnI	CGCG	3 cut(s)	129, 194, 261
MwoI	GCNNNNNNNGC	4 cut(s)	210, 279, 309, 398
NciI	CCSGG	2 cut(s)	305, 433
NdeII	GATC	7 cut(s)	15, 99, 114, 195, 442, 470, 500
NlaIII	CATG	2 cut(s)	187, 208
NlaIV	GGNNCC	1 cut(s)	436
NmeAIII	GCCGAG	1 cut(s)	37
NmuCI	GTSAC	1 cut(s)	160
PcsI	WCGNNNNNNNCGW	1 cut(s)	69
PfeI	GAWTC	3 cut(s)	107, 150, 156
PkrI	GCNGC	7 cut(s)	281, 302, 332, 335, 430, 454, 457
Ple19I	CGATCG	1 cut(s)	198
PpuMI	RGGWCCY	1 cut(s)	217
Psp5II	RGGWCCY	1 cut(s)	217
Psp6I	CCWGG	2 cut(s)	47, 213
PspGI	CCWGG	2 cut(s)	47, 213
PspN4I	GGNNCC	1 cut(s)	436
PspPI	GGNCC	5 cut(s)	51, 67, 78, 217, 435
PspPPI	RGGWCCY	1 cut(s)	217
PsuI	RGATCY	3 cut(s)	442, 470, 500
PvuI	CGATCG	1 cut(s)	198
PvuII	CAGCTG	1 cut(s)	458
SacII	CCGCGG	1 cut(s)	262
SatI	GCNGC	7 cut(s)	280, 301, 331, 334, 429, 453, 456
Sau3AI	GATC	7 cut(s)	15, 99, 114, 195, 442, 470, 500
Sau96I	GGNCC	5 cut(s)	51, 67, 78, 217, 435
ScrFI	CCNGG	4 cut(s)	49, 215, 305, 433
SduI	GDGCHC	1 cut(s)	45
SetI	ASST	7 cut(s)	143, 167, 222, 394, 414, 426, 460
Sfr303I	CCGCGG	1 cut(s)	262
SgrBI	CCGCGG	1 cut(s)	262
SinI	GGWCC	2 cut(s)	217, 435
SspMI	CTAG	1 cut(s)	144
StyD4I	CCNGG	4 cut(s)	47, 213, 303, 431
TaaI	ACNGT	5 cut(s)	241, 296, 323, 344, 439
TaqI	TCGA	5 cut(s)	18, 72, 105, 110, 198
TauI	GCSGC	5 cut(s)	282, 333, 336, 431, 455
TfiI	GAWTC	3 cut(s)	107, 150, 156
TseFI	GTSAC	1 cut(s)	160
TseI	GCWGC	2 cut(s)	300, 455
Tsp45I	GTSAC	1 cut(s)	160
TspDTI	ATGAA	1 cut(s)	221
TspGWI	ACGGA	3 cut(s)	14, 390, 434
VpaK11BI	GGWCC	2 cut(s)	217, 435
XspI	CTAG	1 cut(s)	144

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.