Rh6CG128400

RNA recognition motif

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0004608
Physical Location & Seq
Forward (+)
15352614 .. 15353811
1198 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG128400.1

Sequence Viewer

Length: 531 bp
ATGGCCTCTGCCGAGATCGAGTTCCGTTGCTTCGTCGGAGGGCTCGCCTGGGCCACCGACAACGAGGCCCTCGAAAGGGCCTTTGCTCCTTTTGGCGAGATCATCGAATCGAAGATCATCAACGACCGCGAGACCGGAAGGTCAAGGGGATTCGGATTCGTCACCTTCAGCAACGAGAAGGCCATGAGGGACGCGATCGAAGGCATGAACGGGCAGGACCTTGACGGCCGTAACATCACCGTCAACGAGGCTCAGTCCCGCGGAAGCGGTGGCGGAGGCGGCGGTGGTGGATACGGTGGCAGCCGGGGAGGCGGTGGCTACGGCTCTGGCGGCGGTGGTTATGGCGGCCGTCGTGAAGGTGGAGGCGGTGGCTACGGAAGTGGCGGTGGAGGCTATGGCGGTGGTGGCCGTCGCGAGGGTGGAGGCGGCGGATACAGCCGTGGAGGTGGAAGCTATGGAAGCGGCGGTGGTGGTGGCTACGGAGGTGGCGGCCGGGACCGTGGATCTGATGGCGGTAGCTGGAGGAGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03040 map03040
Pfam Domains
Protein Families
RRM_1

Protein Analysis

176

Amino Acids

17.14

Weight (kDa)

6.35

Isoelectric Point (pI)

60.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_1 PF00076 11 - 80 3.2e-22 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 139
AccII CGCG 4 cut(s) 129, 194, 261, 414
AclWI GGATC 1 cut(s) 511
AcoI YGGCCR 4 cut(s) 226, 346, 406, 490
AcuI CTGAAG 1 cut(s) 151
AfiI CCNNNNNNNGG 3 cut(s) 75, 76, 415
AjnI CCWGG 1 cut(s) 47
AluBI AGCT 2 cut(s) 453, 519
AluI AGCT 2 cut(s) 453, 519
Alw26I GTCTC 1 cut(s) 125
AlwI GGATC 1 cut(s) 511
AoxI GGCC 9 cut(s) 3, 51, 66, 78, 180, 226, 346, 406, 490
ApeKI GCWGC 1 cut(s) 300
AspS9I GGNCC 5 cut(s) 51, 67, 78, 217, 496
AsuC2I CCSGG 2 cut(s) 305, 494
AsuHPI GGTGA 2 cut(s) 154, 229
AvaII GGWCC 2 cut(s) 217, 496
BaeI ACNNNNGTAYC 2 cut(s) 424, 457
BanII GRGCYC 1 cut(s) 45
BbvI GCAGC 1 cut(s) 312
BccI CCATC 1 cut(s) 503
BceAI ACGGC 6 cut(s) 213, 241, 333, 337, 393, 423
BciT130I CCWGG 1 cut(s) 49
BciVI GTATCC 2 cut(s) 284, 425
BcnI CCSGG 2 cut(s) 305, 494
BcoDI GTCTC 1 cut(s) 125
BfuI GTATCC 2 cut(s) 284, 425
BglI GCCNNNNNGGC 1 cut(s) 309
BisI GCNGC 7 cut(s) 280, 301, 331, 346, 427, 463, 490
BlsI GCNGC 7 cut(s) 281, 302, 332, 347, 428, 464, 491
Bme1390I CCNGG 3 cut(s) 49, 305, 494
Bme18I GGWCC 2 cut(s) 217, 496
BmgT120I GGNCC 5 cut(s) 51, 67, 78, 217, 496
BmiI GGNNCC 1 cut(s) 497
BmrFI CCNGG 3 cut(s) 49, 305, 494
BpuMI CCSGG 2 cut(s) 305, 494
BsaI GGTCTC 1 cut(s) 125
BsaJI CCNNGG 5 cut(s) 48, 259, 304, 439, 499
BsaWI WCCGGW 1 cut(s) 134
Bsc4I CCNNNNNNNGG 3 cut(s) 75, 76, 415
BseBI CCWGG 1 cut(s) 49
BseDI CCNNGG 5 cut(s) 48, 259, 304, 439, 499
BseLI CCNNNNNNNGG 3 cut(s) 75, 76, 415
BseMII CTCAG 1 cut(s) 266
BseX3I CGGCCG 3 cut(s) 226, 346, 490
BseXI GCAGC 1 cut(s) 312
Bsh1236I CGCG 4 cut(s) 129, 194, 261, 414
Bsh1285I CGRYCG 5 cut(s) 127, 198, 229, 349, 493
BshFI GGCC 9 cut(s) 5, 53, 68, 80, 182, 228, 348, 408, 492
BsiEI CGRYCG 5 cut(s) 127, 198, 229, 349, 493
BsiSI CCGG 3 cut(s) 135, 304, 493
BslFI GGGAC 3 cut(s) 203, 241, 509
BslI CCNNNNNNNGG 3 cut(s) 75, 76, 415
BsmAI GTCTC 1 cut(s) 125
BsmFI GGGAC 3 cut(s) 203, 241, 509
BsnI GGCC 9 cut(s) 5, 53, 68, 80, 182, 228, 348, 408, 492
Bso31I GGTCTC 1 cut(s) 125
Bsp1286I GDGCHC 1 cut(s) 45
Bsp143I GATC 5 cut(s) 15, 99, 114, 195, 503
Bsp68I TCGCGA 1 cut(s) 414
BspANI GGCC 9 cut(s) 5, 53, 68, 80, 182, 228, 348, 408, 492
BspCNI CTCAG 1 cut(s) 265
BspFNI CGCG 4 cut(s) 129, 194, 261, 414
BspLI GGNNCC 1 cut(s) 497
BspPI GGATC 1 cut(s) 511
BspTNI GGTCTC 1 cut(s) 125
BssECI CCNNGG 5 cut(s) 48, 259, 304, 439, 499
BssMI GATC 5 cut(s) 15, 99, 114, 195, 503
Bst2UI CCWGG 1 cut(s) 49
Bst4CI ACNGT 3 cut(s) 241, 296, 500
BstC8I GCNNGC 1 cut(s) 45
BstDEI CTNAG 1 cut(s) 252
BstDSI CCRYGG 3 cut(s) 259, 439, 499
BstFNI CGCG 4 cut(s) 129, 194, 261, 414
BstKTI GATC 5 cut(s) 18, 102, 117, 198, 506
BstMAI GTCTC 1 cut(s) 125
BstMBI GATC 5 cut(s) 15, 99, 114, 195, 503
BstMCI CGRYCG 5 cut(s) 127, 198, 229, 349, 493
BstMWI GCNNNNNNNGC 7 cut(s) 279, 309, 330, 390, 405, 435, 459
BstNI CCWGG 1 cut(s) 49
BstSCI CCNGG 3 cut(s) 47, 303, 492
BstUI CGCG 4 cut(s) 129, 194, 261, 414
BstV1I GCAGC 1 cut(s) 312
BstX2I RGATCY 1 cut(s) 503
BstYI RGATCY 1 cut(s) 503
BstZI CGGCCG 3 cut(s) 226, 346, 490
BsuI GTATCC 2 cut(s) 284, 425
BsuRI GGCC 9 cut(s) 5, 53, 68, 80, 182, 228, 348, 408, 492
BtgI CCRYGG 3 cut(s) 259, 439, 499
BtuMI TCGCGA 1 cut(s) 414
Cac8I GCNNGC 1 cut(s) 45
Cfr13I GGNCC 5 cut(s) 51, 67, 78, 217, 496
Cfr42I CCGCGG 1 cut(s) 262
CseI GACGC 1 cut(s) 200
CviAII CATG 2 cut(s) 184, 205
DdeI CTNAG 1 cut(s) 252
DpnI GATC 5 cut(s) 17, 101, 116, 197, 505
DpnII GATC 5 cut(s) 15, 99, 114, 195, 503
DrdI GACNNNNNNGTC 1 cut(s) 139
DseDI GACNNNNNNGTC 1 cut(s) 139
EaeI YGGCCR 4 cut(s) 226, 346, 406, 490
EagI CGGCCG 3 cut(s) 226, 346, 490
EciI GGCGGA 2 cut(s) 288, 444
EclXI CGGCCG 3 cut(s) 226, 346, 490
Eco24I GRGCYC 1 cut(s) 45
Eco31I GGTCTC 1 cut(s) 125
Eco47I GGWCC 2 cut(s) 217, 496
Eco52I CGGCCG 3 cut(s) 226, 346, 490
Eco57I CTGAAG 1 cut(s) 151
EcoO109I RGGNCCY 3 cut(s) 67, 78, 217
EcoRII CCWGG 1 cut(s) 47
EcoT38I GRGCYC 1 cut(s) 45
FaeI CATG 2 cut(s) 187, 208
FaiI YATR 5 cut(s) 185, 206, 342, 396, 456
FaqI GGGAC 3 cut(s) 203, 241, 509
FatI CATG 2 cut(s) 183, 204
FauI CCCGC 1 cut(s) 266
Fnu4HI GCNGC 7 cut(s) 280, 301, 331, 346, 427, 463, 490
FriOI GRGCYC 1 cut(s) 45
Fsp4HI GCNGC 7 cut(s) 280, 301, 331, 346, 427, 463, 490
GluI GCNGC 7 cut(s) 280, 301, 331, 346, 427, 463, 490
HaeIII GGCC 9 cut(s) 5, 53, 68, 80, 182, 228, 348, 408, 492
HapII CCGG 3 cut(s) 135, 304, 493
HgaI GACGC 1 cut(s) 200
Hin1II CATG 2 cut(s) 187, 208
HincII GTYRAC 1 cut(s) 244
HindII GTYRAC 1 cut(s) 244
HinfI GANTC 3 cut(s) 107, 150, 156
HpaII CCGG 3 cut(s) 135, 304, 493
HphI GGTGA 2 cut(s) 154, 229
Hpy166II GTNNAC 1 cut(s) 244
Hpy188I TCNGA 3 cut(s) 38, 155, 508
Hpy188III TCNNGA 2 cut(s) 353, 413
Hpy8I GTNNAC 1 cut(s) 244
Hpy99I CGWCG 3 cut(s) 38, 354, 414
HpyAV CCTTC 5 cut(s) 132, 172, 175, 194, 350
HpyCH4III ACNGT 3 cut(s) 241, 296, 500
HpyF10VI GCNNNNNNNGC 7 cut(s) 279, 309, 330, 390, 405, 435, 459
HpyF3I CTNAG 1 cut(s) 252
Hsp92II CATG 2 cut(s) 187, 208
KspI CCGCGG 1 cut(s) 262
Kzo9I GATC 5 cut(s) 15, 99, 114, 195, 503
LmnI GCTCC 1 cut(s) 91
LpnPI CCDG 8 cut(s) 34, 61, 148, 200, 312, 317, 505, 506
Lsp1109I GCAGC 1 cut(s) 312
MaeIII GTNAC 2 cut(s) 160, 230
MalI GATC 5 cut(s) 17, 101, 116, 197, 505
MboI GATC 5 cut(s) 15, 99, 114, 195, 503
MboII GAAGA 1 cut(s) 124
MflI RGATCY 1 cut(s) 503
MhlI GDGCHC 1 cut(s) 45
MmeI TCCRAC 1 cut(s) 16
MspA1I CMGCKG 1 cut(s) 261
MspI CCGG 3 cut(s) 135, 304, 493
MspR9I CCNGG 3 cut(s) 49, 305, 494
MvaI CCWGG 1 cut(s) 49
MvnI CGCG 4 cut(s) 129, 194, 261, 414
MwoI GCNNNNNNNGC 7 cut(s) 279, 309, 330, 390, 405, 435, 459
NciI CCSGG 2 cut(s) 305, 494
NdeII GATC 5 cut(s) 15, 99, 114, 195, 503
NlaIII CATG 2 cut(s) 187, 208
NlaIV GGNNCC 1 cut(s) 497
NmeAIII GCCGAG 1 cut(s) 37
NmuCI GTSAC 1 cut(s) 160
NruI TCGCGA 1 cut(s) 414
PcsI WCGNNNNNNNCGW 1 cut(s) 69
PfeI GAWTC 3 cut(s) 107, 150, 156
PkrI GCNGC 7 cut(s) 281, 302, 332, 347, 428, 464, 491
Ple19I CGATCG 1 cut(s) 198
PpuMI RGGWCCY 1 cut(s) 217
Psp5II RGGWCCY 1 cut(s) 217
Psp6I CCWGG 1 cut(s) 47
PspGI CCWGG 1 cut(s) 47
PspN4I GGNNCC 1 cut(s) 497
PspPI GGNCC 5 cut(s) 51, 67, 78, 217, 496
PspPPI RGGWCCY 1 cut(s) 217
PsuI RGATCY 1 cut(s) 503
PvuI CGATCG 1 cut(s) 198
RruI TCGCGA 1 cut(s) 414
SacII CCGCGG 1 cut(s) 262
SatI GCNGC 7 cut(s) 280, 301, 331, 346, 427, 463, 490
Sau3AI GATC 5 cut(s) 15, 99, 114, 195, 503
Sau96I GGNCC 5 cut(s) 51, 67, 78, 217, 496
ScrFI CCNGG 3 cut(s) 49, 305, 494
SduI GDGCHC 1 cut(s) 45
SetI ASST 8 cut(s) 143, 167, 222, 361, 448, 455, 487, 521
Sfr303I CCGCGG 1 cut(s) 262
SgrBI CCGCGG 1 cut(s) 262
SinI GGWCC 2 cut(s) 217, 496
StyD4I CCNGG 3 cut(s) 47, 303, 492
TaaI ACNGT 3 cut(s) 241, 296, 500
TaqI TCGA 5 cut(s) 18, 72, 105, 110, 198
TauI GCSGC 6 cut(s) 282, 333, 348, 429, 465, 492
TfiI GAWTC 3 cut(s) 107, 150, 156
TseFI GTSAC 1 cut(s) 160
TseI GCWGC 1 cut(s) 300
Tsp45I GTSAC 1 cut(s) 160
TspDTI ATGAA 1 cut(s) 221
TspGWI ACGGA 3 cut(s) 14, 390, 495
VpaK11BI GGWCC 2 cut(s) 217, 496
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.