Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0004608

Physical Location & Seq

Genomic Coordinates Forward (+)

58036890 .. 58037295

Gene Structure 406 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ20935

Sequence Viewer

CDS Protein Promoter (2k)

Length: 237 bp

ATGAGGCTTAGTCCCGCGAAAGCGGTGGTGGTGGTCCTCGTAAAGGGGAAGGCAGTAGCTACAGAAGTGGCGGTGGAGGTTATGGCGGCGGTGGCTGTCGTGAGGGTGGAGACAATGGCTACAGCCATGGAGGTGGTAGCTATGGAAGCGAGAGTGGAGGTAGCTATGAAGGTGGTGGTCGAGACCGTAGATCTGATGACAGCAGTTGGAGGAGTTAGATCTATTAGGGTTTTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

78

Amino Acids

8.14

Weight (kDa)

8.19

Isoelectric Point (pI)

22.84

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0004608)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G21660 AT2G21660
fragaria_vesca	FvH4_2g08880 FvH4_2g08880 FvH4_2g08880 FvH4_2g08880
malus_domestica	MD10G1075500.v1.1
prunus_persica	Prupe.1G176300_v2.0.a1 Prupe.2G011900_v2.0.a1 Prupe.3G163600_v2.0.a1 Prupe.5G141500_v2.0.a1 Prupe.7G178900_v2.0.a1 Prupe.8G096400_v2.0.a1 Prupe.8G096400_v2.0.a1 Prupe.8G096400_v2.0.a1 Prupe.8G096400_v2.0.a1 Prupe.8G096400_v2.0.a1 Prupe.8G096400_v2.0.a1 Prupe.8G096400_v2.0.a1
pyrus_communis	pycom05g05700 pycom10g05900
rosa_chinensis	RchiOBHm_Chr6g0264491 RchiOBHm_Chr7g0233551
rosa_multiflora	Rmu_sc0004946.1_g000027
rosa_roxburghii	Rroxscaffold_176G00431830
rosa_rugosa	Rorug06G0013300
rosa_samantha	Rh6AG132700 Rh6BG130100 Rh6CG128400 Rh6DG115500
rosa_wichuraiana	Rw0G020850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	17
AciI	CCGC	5 cut(s)	15, 23, 71, 86, 89
AfiI	CCNNNNNNNGG	1 cut(s)	43
AluBI	AGCT	3 cut(s)	59, 140, 164
AluI	AGCT	3 cut(s)	59, 140, 164
Alw26I	GTCTC	2 cut(s)	104, 176
AspS9I	GGNCC	1 cut(s)	34
AvaII	GGWCC	1 cut(s)	34
BcoDI	GTCTC	2 cut(s)	104, 176
BfmI	CTRYAG	2 cut(s)	60, 120
BglII	AGATCT	2 cut(s)	190, 218
BisI	GCNGC	1 cut(s)	87
BlsI	GCNGC	1 cut(s)	88
Bme18I	GGWCC	1 cut(s)	34
BmgT120I	GGNCC	1 cut(s)	34
BsaI	GGTCTC	1 cut(s)	176
BsaJI	CCNNGG	1 cut(s)	126
Bsc4I	CCNNNNNNNGG	1 cut(s)	43
BseDI	CCNNGG	1 cut(s)	126
BseLI	CCNNNNNNNGG	1 cut(s)	43
BseRI	GAGGAG	1 cut(s)	225
Bsh1236I	CGCG	1 cut(s)	17
BslI	CCNNNNNNNGG	1 cut(s)	43
BsmAI	GTCTC	2 cut(s)	104, 176
Bso31I	GGTCTC	1 cut(s)	176
Bsp143I	GATC	2 cut(s)	190, 218
Bsp19I	CCATGG	1 cut(s)	126
BspACI	CCGC	5 cut(s)	15, 23, 71, 86, 89
BspFNI	CGCG	1 cut(s)	17
BspTNI	GGTCTC	1 cut(s)	176
BssECI	CCNNGG	1 cut(s)	126
BssMI	GATC	2 cut(s)	190, 218
BssT1I	CCWWGG	1 cut(s)	126
Bst4CI	ACNGT	1 cut(s)	187
BstDEI	CTNAG	1 cut(s)	8
BstDSI	CCRYGG	1 cut(s)	126
BstENI	CCTNNNNNAGG	1 cut(s)	41
BstFNI	CGCG	1 cut(s)	17
BstKTI	GATC	2 cut(s)	193, 221
BstMAI	GTCTC	2 cut(s)	104, 176
BstMBI	GATC	2 cut(s)	190, 218
BstMWI	GCNNNNNNNGC	2 cut(s)	92, 146
BstSFI	CTRYAG	2 cut(s)	60, 120
BstUI	CGCG	1 cut(s)	17
BstX2I	RGATCY	2 cut(s)	190, 218
BstXI	CCANNNNNNTGG	1 cut(s)	133
BstYI	RGATCY	2 cut(s)	190, 218
BtgI	CCRYGG	1 cut(s)	126
Cfr13I	GGNCC	1 cut(s)	34
CviAII	CATG	1 cut(s)	127
CviJI	RGCY	7 cut(s)	7, 59, 95, 119, 125, 140, 164
CviKI_1	RGCY	7 cut(s)	7, 59, 95, 119, 125, 140, 164
DdeI	CTNAG	1 cut(s)	8
DpnI	GATC	2 cut(s)	192, 220
DpnII	GATC	2 cut(s)	190, 218
Eco130I	CCWWGG	1 cut(s)	126
Eco31I	GGTCTC	1 cut(s)	176
Eco47I	GGWCC	1 cut(s)	34
EcoNI	CCTNNNNNAGG	1 cut(s)	41
EcoT14I	CCWWGG	1 cut(s)	126
ErhI	CCWWGG	1 cut(s)	126
FaeI	CATG	1 cut(s)	130
FaiI	YATR	4 cut(s)	83, 128, 143, 167
FatI	CATG	1 cut(s)	126
FauI	CCCGC	1 cut(s)	22
Fnu4HI	GCNGC	1 cut(s)	87
Fsp4HI	GCNGC	1 cut(s)	87
GluI	GCNGC	1 cut(s)	87
Hin1II	CATG	1 cut(s)	130
Hpy188I	TCNGA	1 cut(s)	195
Hpy188III	TCNNGA	2 cut(s)	100, 181
HpyAV	CCTTC	2 cut(s)	43, 163
HpyCH4III	ACNGT	1 cut(s)	187
HpyF10VI	GCNNNNNNNGC	2 cut(s)	92, 146
HpyF3I	CTNAG	1 cut(s)	8
Hsp92II	CATG	1 cut(s)	130
Kzo9I	GATC	2 cut(s)	190, 218
MalI	GATC	2 cut(s)	192, 220
MboI	GATC	2 cut(s)	190, 218
MflI	RGATCY	2 cut(s)	190, 218
MmeI	TCCRAC	1 cut(s)	187
MnlI	CCTC	6 cut(s)	47, 70, 96, 124, 151, 203
MslI	CAYNNNNRTG	1 cut(s)	131
MvnI	CGCG	1 cut(s)	17
MwoI	GCNNNNNNNGC	2 cut(s)	92, 146
NcoI	CCATGG	1 cut(s)	126
NdeII	GATC	2 cut(s)	190, 218
NlaIII	CATG	1 cut(s)	130
PkrI	GCNGC	1 cut(s)	88
PspPI	GGNCC	1 cut(s)	34
PsuI	RGATCY	2 cut(s)	190, 218
RseI	CAYNNNNRTG	1 cut(s)	131
SatI	GCNGC	1 cut(s)	87
Sau3AI	GATC	2 cut(s)	190, 218
Sau96I	GGNCC	1 cut(s)	34
SetI	ASST	7 cut(s)	61, 81, 135, 142, 162, 166, 174
SfcI	CTRYAG	2 cut(s)	60, 120
SgeI	CNNG	7 cut(s)	26, 28, 50, 112, 139, 162, 193
SinI	GGWCC	1 cut(s)	34
SmiMI	CAYNNNNRTG	1 cut(s)	131
SsiI	CCGC	5 cut(s)	15, 23, 71, 86, 89
StyI	CCWWGG	1 cut(s)	126
TaaI	ACNGT	1 cut(s)	187
TaqI	TCGA	1 cut(s)	180
TauI	GCSGC	1 cut(s)	89
TspDTI	ATGAA	1 cut(s)	182
VpaK11BI	GGWCC	1 cut(s)	34
XagI	CCTNNNNNAGG	1 cut(s)	41

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.