pycom05g05700

RNA recognition motif

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr5
OG0004608
Physical Location & Seq
Reverse (-)
7080653 .. 7081416
764 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom05g05700.1

Sequence Viewer

Length: 462 bp
ATGAGGCGCTGGAGAGGGCCTTTTCTCAGTATGGTGAGATCGATCGAATCGAAGATCATCAACGACCGTGAGACTGGGAGGTCCAGGGGCTTCGGCTTCGTCACCTTCGGCAACGAGCAGGCTATGAGGGATGCGATCGAAGCCATGAACGGCCAGAACCTCGACGGCCGCAACATCACCGTCAATGAGGCGCAGTCTCGCGGATCTGGGGGTGGCGGTGGCGGAGGAGGCTACAGCCGCGGAGGCGGCGGTGGTGGATACGGAGGTGGCGGATACGGAGGTGGAGGTCGTCGTGAAGGCGGCGGAGGCGGCTACAGCAGCCGTGGAGGTGGAGGCGGCGGTGGATATGGAGGTGGCGGTGGTGGATATGGCGGTGGTCGTCGTGAGGGTGGATATGGAGGTGGCGAGGGTGGCTATTCCAGGGGTGGCGGTGGAGCTGAGGGCGGCAGCTGGAGGAGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03040 map03040
Pfam Domains
Protein Families
RRM_1

Protein Analysis

154

Amino Acids

14.87

Weight (kDa)

10.24

Isoelectric Point (pI)

76.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_1 PF00076 16 - 60 1.7e-12 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 79
AccII CGCG 2 cut(s) 201, 240
AclWI GGATC 1 cut(s) 211
AcoI YGGCCR 2 cut(s) 151, 166
AjnI CCWGG 2 cut(s) 83, 419
AluBI AGCT 2 cut(s) 437, 450
AluI AGCT 2 cut(s) 437, 450
Alw26I GTCTC 2 cut(s) 65, 201
AlwI GGATC 1 cut(s) 211
AoxI GGCC 3 cut(s) 17, 151, 166
ApeKI GCWGC 2 cut(s) 318, 447
AspLEI GCGC 2 cut(s) 9, 193
AspS9I GGNCC 2 cut(s) 17, 81
AsuHPI GGTGA 3 cut(s) 46, 94, 169
AvaII GGWCC 1 cut(s) 81
BaeI ACNNNNGTAYC 4 cut(s) 250, 265, 283, 298
BbvCI CCTCAGC 1 cut(s) 438
BbvI GCAGC 1 cut(s) 330
BceAI ACGGC 3 cut(s) 166, 181, 306
BciT130I CCWGG 2 cut(s) 85, 421
BciVI GTATCC 2 cut(s) 251, 266
BcoDI GTCTC 2 cut(s) 65, 201
BfmI CTRYAG 2 cut(s) 232, 313
BfoI RGCGCY 1 cut(s) 10
BfuI GTATCC 2 cut(s) 251, 266
BglI GCCNNNNNGGC 1 cut(s) 243
BisI GCNGC 9 cut(s) 169, 238, 247, 301, 310, 319, 337, 445, 448
BlsI GCNGC 9 cut(s) 170, 239, 248, 302, 311, 320, 338, 446, 449
Bme1390I CCNGG 2 cut(s) 85, 421
Bme18I GGWCC 1 cut(s) 81
BmgT120I GGNCC 2 cut(s) 17, 81
BmrFI CCNGG 2 cut(s) 85, 421
BmrI ACTGGG 1 cut(s) 84
BmsI GCATC 1 cut(s) 121
BmuI ACTGGG 1 cut(s) 84
BpmI CTGGAG 1 cut(s) 31
Bpu10I CCTNAGC 1 cut(s) 438
Bsa29I ATCGAT 1 cut(s) 41
BsaJI CCNNGG 4 cut(s) 84, 238, 322, 420
Bse1I ACTGG 1 cut(s) 79
BseBI CCWGG 2 cut(s) 85, 421
BseCI ATCGAT 1 cut(s) 41
BseDI CCNNGG 4 cut(s) 84, 238, 322, 420
BseGI GGATG 1 cut(s) 136
BseMII CTCAG 2 cut(s) 40, 429
BseNI ACTGG 1 cut(s) 79
BseRI GAGGAG 1 cut(s) 240
BseX3I CGGCCG 1 cut(s) 166
BseXI GCAGC 1 cut(s) 330
Bsh1236I CGCG 2 cut(s) 201, 240
Bsh1285I CGRYCG 4 cut(s) 45, 67, 138, 169
BshFI GGCC 3 cut(s) 19, 153, 168
BshVI ATCGAT 1 cut(s) 41
BsiEI CGRYCG 4 cut(s) 45, 67, 138, 169
BsmAI GTCTC 2 cut(s) 65, 201
BsnI GGCC 3 cut(s) 19, 153, 168
Bsp143I GATC 5 cut(s) 38, 42, 54, 135, 203
BspANI GGCC 3 cut(s) 19, 153, 168
BspCNI CTCAG 2 cut(s) 39, 430
BspDI ATCGAT 1 cut(s) 41
BspFNI CGCG 2 cut(s) 201, 240
BspPI GGATC 1 cut(s) 211
BsrI ACTGG 1 cut(s) 79
BssECI CCNNGG 4 cut(s) 84, 238, 322, 420
BssMI GATC 5 cut(s) 38, 42, 54, 135, 203
Bst2UI CCWGG 2 cut(s) 85, 421
Bst4CI ACNGT 2 cut(s) 68, 181
BstC8I GCNNGC 1 cut(s) 120
BstDEI CTNAG 2 cut(s) 26, 438
BstDSI CCRYGG 2 cut(s) 238, 322
BstF5I GGATG 1 cut(s) 136
BstFNI CGCG 2 cut(s) 201, 240
BstH2I RGCGCY 1 cut(s) 10
BstHHI GCGC 2 cut(s) 9, 193
BstKTI GATC 5 cut(s) 41, 45, 57, 138, 206
BstMAI GTCTC 2 cut(s) 65, 201
BstMBI GATC 5 cut(s) 38, 42, 54, 135, 203
BstMCI CGRYCG 4 cut(s) 45, 67, 138, 169
BstNI CCWGG 2 cut(s) 85, 421
BstSCI CCNGG 2 cut(s) 83, 419
BstSFI CTRYAG 2 cut(s) 232, 313
BstUI CGCG 2 cut(s) 201, 240
BstV1I GCAGC 1 cut(s) 330
BstX2I RGATCY 1 cut(s) 203
BstYI RGATCY 1 cut(s) 203
BstZI CGGCCG 1 cut(s) 166
Bsu15I ATCGAT 1 cut(s) 41
BsuI GTATCC 2 cut(s) 251, 266
BsuRI GGCC 3 cut(s) 19, 153, 168
BsuTUI ATCGAT 1 cut(s) 41
BtgI CCRYGG 2 cut(s) 238, 322
BtsCI GGATG 1 cut(s) 136
Cac8I GCNNGC 1 cut(s) 120
CfoI GCGC 2 cut(s) 9, 193
Cfr13I GGNCC 2 cut(s) 17, 81
Cfr42I CCGCGG 1 cut(s) 241
ClaI ATCGAT 1 cut(s) 41
CviAII CATG 1 cut(s) 145
DdeI CTNAG 2 cut(s) 26, 438
DpnI GATC 5 cut(s) 40, 44, 56, 137, 205
DpnII GATC 5 cut(s) 38, 42, 54, 135, 203
DrdI GACNNNNNNGTC 1 cut(s) 79
DseDI GACNNNNNNGTC 1 cut(s) 79
EaeI YGGCCR 2 cut(s) 151, 166
EagI CGGCCG 1 cut(s) 166
EciI GGCGGA 3 cut(s) 237, 285, 318
EclXI CGGCCG 1 cut(s) 166
Eco47I GGWCC 1 cut(s) 81
Eco52I CGGCCG 1 cut(s) 166
EcoO109I RGGNCCY 1 cut(s) 17
EcoRII CCWGG 2 cut(s) 83, 419
FaeI CATG 1 cut(s) 148
FaiI YATR 6 cut(s) 32, 125, 146, 348, 369, 396
FatI CATG 1 cut(s) 144
Fnu4HI GCNGC 9 cut(s) 169, 238, 247, 301, 310, 319, 337, 445, 448
FokI GGATG 1 cut(s) 143
Fsp4HI GCNGC 9 cut(s) 169, 238, 247, 301, 310, 319, 337, 445, 448
GlaI GCGC 2 cut(s) 8, 192
GluI GCNGC 9 cut(s) 169, 238, 247, 301, 310, 319, 337, 445, 448
GsuI CTGGAG 1 cut(s) 31
HaeII RGCGCY 1 cut(s) 10
HaeIII GGCC 3 cut(s) 19, 153, 168
HhaI GCGC 2 cut(s) 9, 193
Hin1II CATG 1 cut(s) 148
Hin6I GCGC 2 cut(s) 7, 191
HinP1I GCGC 2 cut(s) 7, 191
HinfI GANTC 1 cut(s) 47
HphI GGTGA 3 cut(s) 46, 94, 169
Hpy188III TCNNGA 2 cut(s) 293, 383
Hpy99I CGWCG 3 cut(s) 167, 294, 384
HpyAV CCTTC 2 cut(s) 115, 290
HpyCH4III ACNGT 2 cut(s) 68, 181
HpyF3I CTNAG 2 cut(s) 26, 438
Hsp92II CATG 1 cut(s) 148
HspAI GCGC 2 cut(s) 7, 191
KspI CCGCGG 1 cut(s) 241
Kzo9I GATC 5 cut(s) 38, 42, 54, 135, 203
LmnI GCTCC 1 cut(s) 434
LpnPI CCDG 9 cut(s) 60, 70, 97, 104, 167, 192, 406, 433, 436
Lsp1109I GCAGC 1 cut(s) 330
LweI GCATC 1 cut(s) 121
MaeIII GTNAC 1 cut(s) 100
MalI GATC 5 cut(s) 40, 44, 56, 137, 205
MboI GATC 5 cut(s) 38, 42, 54, 135, 203
MboII GAAGA 1 cut(s) 64
MflI RGATCY 1 cut(s) 203
MseI TTAA 1 cut(s) 460
MspA1I CMGCKG 2 cut(s) 240, 450
MspR9I CCNGG 2 cut(s) 85, 421
MvaI CCWGG 2 cut(s) 85, 421
MvnI CGCG 2 cut(s) 201, 240
NdeII GATC 5 cut(s) 38, 42, 54, 135, 203
NlaIII CATG 1 cut(s) 148
NmuCI GTSAC 1 cut(s) 100
PcsI WCGNNNNNNNCGW 1 cut(s) 47
PfeI GAWTC 1 cut(s) 47
PkrI GCNGC 9 cut(s) 170, 239, 248, 302, 311, 320, 338, 446, 449
Ple19I CGATCG 2 cut(s) 45, 138
Psp6I CCWGG 2 cut(s) 83, 419
PspGI CCWGG 2 cut(s) 83, 419
PspPI GGNCC 2 cut(s) 17, 81
PsuI RGATCY 1 cut(s) 203
PvuI CGATCG 2 cut(s) 45, 138
PvuII CAGCTG 1 cut(s) 450
SacII CCGCGG 1 cut(s) 241
SaqAI TTAA 1 cut(s) 460
SatI GCNGC 9 cut(s) 169, 238, 247, 301, 310, 319, 337, 445, 448
Sau3AI GATC 5 cut(s) 38, 42, 54, 135, 203
Sau96I GGNCC 2 cut(s) 17, 81
ScrFI CCNGG 2 cut(s) 85, 421
SfaNI GCATC 1 cut(s) 121
SfcI CTRYAG 2 cut(s) 232, 313
Sfr303I CCGCGG 1 cut(s) 241
SgrBI CCGCGG 1 cut(s) 241
SinI GGWCC 1 cut(s) 81
StyD4I CCNGG 2 cut(s) 83, 419
TaaI ACNGT 2 cut(s) 68, 181
TaqI TCGA 5 cut(s) 41, 45, 50, 138, 162
TauI GCSGC 7 cut(s) 171, 240, 249, 303, 312, 339, 447
TfiI GAWTC 1 cut(s) 47
Tru1I TTAA 1 cut(s) 460
Tru9I TTAA 1 cut(s) 460
TseFI GTSAC 1 cut(s) 100
TseI GCWGC 2 cut(s) 318, 447
Tsp45I GTSAC 1 cut(s) 100
TspDTI ATGAA 1 cut(s) 161
TspGWI ACGGA 2 cut(s) 276, 291
VpaK11BI GGWCC 1 cut(s) 81
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.