Prupe.3G163600_v2.0.a1

RNA binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
OG0004608
Physical Location & Seq
Forward (+)
18305532 .. 18308313
2782 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G163600.1

Sequence Viewer

Length: 324 bp
ATGGGCCGATCGGGACCCGCCCGCCCATCGAAAAAAAGCCCAGCCCGTGAGATCATTGAATCGAAGATCATCAATGACCGTGAGACCGAGAGGTCTAAGGGCTTCGTCTTCGTCACTTTCAATAATGAGAAGGCCATGAGGGACGCGATTGAAGGCATAAACGGCCAGAACCTCGACGGTCGTAACATCACCATCAACGAGGCCCAGTCTCGTGGAAGCGGGGTGGTGGTGGCAGTAACGAAGGTTACAGCCGAGGAGGATATGGCAGTGTTGGCTACGAAGGTGGCGGTCATCGTGAAGGCAGTGGGGATAGCGTCTCGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0001558 GO:0003674 GO:0003676 GO:0003723 GO:0003727 GO:0003729 GO:0003730 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005730 GO:0005737 GO:0006139 GO:0006396 GO:0006412 GO:0006417 GO:0006518 GO:0006725 GO:0006807 GO:0006950 GO:0006996 GO:0008150 GO:0008152 GO:0008187 GO:0008266 GO:0009058 GO:0009059 GO:0009266 GO:0009314 GO:0009409 GO:0009411 GO:0009416 GO:0009628 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009894 GO:0009895 GO:0009987 GO:0010033 GO:0010467 GO:0010468 GO:0010494 GO:0010556 GO:0010557 GO:0010558 GO:0010564 GO:0010604 GO:0010605 GO:0010608 GO:0010628 GO:0010629 GO:0014070 GO:0016043 GO:0016070 GO:0016441 GO:0016458 GO:0017148 GO:0019219 GO:0019222 GO:0019538 GO:0019843 GO:0022607 GO:0022613 GO:0022618 GO:0030308 GO:0030371 GO:0030425 GO:0031047 GO:0031050 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0031329 GO:0031330 GO:0031974 GO:0031981 GO:0032268 GO:0032269 GO:0032270 GO:0032991 GO:0033554 GO:0034063 GO:0034248 GO:0034249 GO:0034250 GO:0034622 GO:0034641 GO:0034645 GO:0035194 GO:0035195 GO:0035196 GO:0035770 GO:0036464 GO:0036477 GO:0040008 GO:0040029 GO:0042221 GO:0042995 GO:0043005 GO:0043021 GO:0043023 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043331 GO:0043487 GO:0043488 GO:0043489 GO:0043603 GO:0043604 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044463 GO:0044464 GO:0044877 GO:0045182 GO:0045727 GO:0045926 GO:0045934 GO:0046483 GO:0048255 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051171 GO:0051172 GO:0051173 GO:0051246 GO:0051247 GO:0051248 GO:0051252 GO:0051253 GO:0051716 GO:0051726 GO:0060255 GO:0061013 GO:0065003 GO:0065007 GO:0065008 GO:0070013 GO:0070181 GO:0070417 GO:0070887 GO:0070918 GO:0070925 GO:0071310 GO:0071359 GO:0071407 GO:0071704 GO:0071826 GO:0071840 GO:0080090 GO:0090304 GO:0097159 GO:0097447 GO:0097458 GO:0120025 GO:0120038 GO:1901360 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1901698 GO:1901699 GO:1901987 GO:1902369 GO:1902373 GO:1902806 GO:1903311 GO:1903312 GO:1990904 GO:2000112 GO:2000113
KEGG Pathways
Metabolic & Signaling
ko03013 ko03015 ko03018 map03013 map03015 map03018
Pfam Domains
Protein Families
RRM_1

Protein Analysis

108

Amino Acids

11.47

Weight (kDa)

9.77

Isoelectric Point (pI)

50.55

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 91
AccII CGCG 1 cut(s) 146
AciI CCGC 4 cut(s) 18, 22, 219, 287
AcoI YGGCCR 1 cut(s) 163
AgsI TTSAA 3 cut(s) 59, 121, 152
Alw26I GTCTC 2 cut(s) 77, 213
AoxI GGCC 4 cut(s) 4, 132, 163, 201
AspS9I GGNCC 3 cut(s) 4, 14, 202
AsuHPI GGTGA 1 cut(s) 181
AvaII GGWCC 1 cut(s) 14
BauI CACGAG 1 cut(s) 210
BbsI GAAGAC 1 cut(s) 100
BccI CCATC 2 cut(s) 34, 200
BceAI ACGGC 1 cut(s) 178
BcoDI GTCTC 2 cut(s) 77, 213
Bme18I GGWCC 1 cut(s) 14
BmgT120I GGNCC 3 cut(s) 4, 14, 202
BmiI GGNNCC 2 cut(s) 15, 16
BmrI ACTGGG 1 cut(s) 199
BmuI ACTGGG 1 cut(s) 199
BpiI GAAGAC 1 cut(s) 100
BsaI GGTCTC 1 cut(s) 77
BsaJI CCNNGG 1 cut(s) 252
Bse1I ACTGG 1 cut(s) 205
BseDI CCNNGG 1 cut(s) 252
BseNI ACTGG 1 cut(s) 205
BseRI GAGGAG 1 cut(s) 269
BseYI CCCAGC 1 cut(s) 40
Bsh1236I CGCG 1 cut(s) 146
Bsh1285I CGRYCG 2 cut(s) 11, 181
BshFI GGCC 4 cut(s) 6, 134, 165, 203
BsiEI CGRYCG 2 cut(s) 11, 181
BslFI GGGAC 2 cut(s) 27, 155
BsmAI GTCTC 2 cut(s) 77, 213
BsmFI GGGAC 2 cut(s) 27, 155
BsnI GGCC 4 cut(s) 6, 134, 165, 203
Bso31I GGTCTC 1 cut(s) 77
Bsp143I GATC 3 cut(s) 8, 51, 66
BspACI CCGC 4 cut(s) 18, 22, 219, 287
BspANI GGCC 4 cut(s) 6, 134, 165, 203
BspFNI CGCG 1 cut(s) 146
BspLI GGNNCC 2 cut(s) 15, 16
BspTNI GGTCTC 1 cut(s) 77
BsrI ACTGG 1 cut(s) 205
BssECI CCNNGG 1 cut(s) 252
BssMI GATC 3 cut(s) 8, 51, 66
BssSI CACGAG 1 cut(s) 210
Bst2BI CACGAG 1 cut(s) 210
Bst4CI ACNGT 2 cut(s) 80, 179
BstC8I GCNNGC 1 cut(s) 22
BstDEI CTNAG 1 cut(s) 96
BstFNI CGCG 1 cut(s) 146
BstKTI GATC 3 cut(s) 11, 54, 69
BstMAI GTCTC 2 cut(s) 77, 213
BstMBI GATC 3 cut(s) 8, 51, 66
BstMCI CGRYCG 2 cut(s) 11, 181
BstMWI GCNNNNNNNGC 2 cut(s) 162, 272
BstUI CGCG 1 cut(s) 146
BstV2I GAAGAC 1 cut(s) 100
BstXI CCANNNNNNTGG 1 cut(s) 212
BsuRI GGCC 4 cut(s) 6, 134, 165, 203
BtsI GCAGTG 2 cut(s) 273, 309
BtsIMutI CAGTG 2 cut(s) 273, 309
Cac8I GCNNGC 1 cut(s) 22
Cfr13I GGNCC 3 cut(s) 4, 14, 202
CseI GACGC 2 cut(s) 152, 303
CviAII CATG 1 cut(s) 136
CviJI RGCY 9 cut(s) 6, 39, 44, 102, 134, 165, 203, 251, 275
CviKI_1 RGCY 9 cut(s) 6, 39, 44, 102, 134, 165, 203, 251, 275
DdeI CTNAG 1 cut(s) 96
DpnI GATC 3 cut(s) 10, 53, 68
DpnII GATC 3 cut(s) 8, 51, 66
DrdI GACNNNNNNGTC 1 cut(s) 91
DseDI GACNNNNNNGTC 1 cut(s) 91
EaeI YGGCCR 1 cut(s) 163
Eco31I GGTCTC 1 cut(s) 77
Eco47I GGWCC 1 cut(s) 14
EcoO109I RGGNCCY 1 cut(s) 14
FaeI CATG 1 cut(s) 139
FaiI YATR 3 cut(s) 137, 158, 263
FaqI GGGAC 2 cut(s) 27, 155
FatI CATG 1 cut(s) 135
FauI CCCGC 3 cut(s) 25, 29, 212
GsaI CCCAGC 1 cut(s) 44
HaeIII GGCC 4 cut(s) 6, 134, 165, 203
HgaI GACGC 2 cut(s) 152, 303
Hin1II CATG 1 cut(s) 139
HinfI GANTC 1 cut(s) 59
HphI GGTGA 1 cut(s) 181
Hpy188III TCNNGA 3 cut(s) 12, 295, 318
Hpy99I CGWCG 1 cut(s) 179
HpyAV CCTTC 5 cut(s) 124, 146, 235, 274, 292
HpyCH4III ACNGT 2 cut(s) 80, 179
HpyF10VI GCNNNNNNNGC 2 cut(s) 162, 272
HpyF3I CTNAG 1 cut(s) 96
Hsp92II CATG 1 cut(s) 139
KflI GGGWCCC 1 cut(s) 14
Kzo9I GATC 3 cut(s) 8, 51, 66
LpnPI CCDG 3 cut(s) 54, 179, 218
MaeIII GTNAC 4 cut(s) 112, 182, 235, 244
MalI GATC 3 cut(s) 10, 53, 68
MboI GATC 3 cut(s) 8, 51, 66
MboII GAAGA 2 cut(s) 76, 100
MnlI CCTC 6 cut(s) 84, 132, 182, 193, 247, 250
MvnI CGCG 1 cut(s) 146
MwoI GCNNNNNNNGC 2 cut(s) 162, 272
NdeII GATC 3 cut(s) 8, 51, 66
NlaIII CATG 1 cut(s) 139
NlaIV GGNNCC 2 cut(s) 15, 16
NmeAIII GCCGAG 1 cut(s) 277
NmuCI GTSAC 1 cut(s) 112
PfeI GAWTC 1 cut(s) 59
Ple19I CGATCG 1 cut(s) 11
PpuMI RGGWCCY 1 cut(s) 14
Psp5II RGGWCCY 1 cut(s) 14
PspFI CCCAGC 1 cut(s) 40
PspN4I GGNNCC 2 cut(s) 15, 16
PspPI GGNCC 3 cut(s) 4, 14, 202
PspPPI RGGWCCY 1 cut(s) 14
PvuI CGATCG 1 cut(s) 11
Sau3AI GATC 3 cut(s) 8, 51, 66
Sau96I GGNCC 3 cut(s) 4, 14, 202
SetI ASST 4 cut(s) 95, 174, 246, 285
SinI GGWCC 1 cut(s) 14
SsiI CCGC 4 cut(s) 18, 22, 219, 287
TaaI ACNGT 2 cut(s) 80, 179
TaqI TCGA 4 cut(s) 29, 62, 174, 319
TaqII GACCGA 1 cut(s) 101
TfiI GAWTC 1 cut(s) 59
TscAI CASTG 2 cut(s) 273, 309
TseFI GTSAC 1 cut(s) 112
Tsp45I GTSAC 1 cut(s) 112
TspRI CASTG 2 cut(s) 273, 309
VpaK11BI GGWCC 1 cut(s) 14
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.