Rh6BG130100

RNA recognition motif

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0004608
Physical Location & Seq
Forward (+)
20216706 .. 20217903
1198 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG130100.1

Sequence Viewer

Length: 531 bp
ATGGCCTCTGCCGAGATCGAGTTCCGTTGCTTCGTCGGAGGGCTCGCCTGGGCCACCGACAACGAGGCCCTCGAAAGGGCCTTTGCTCCTTTTGGCGAGATCATCGAATCGAAGATCATCAACGACCGCGAGACCGGAAGGTCAAGGGGATTCGGATTCGTCACCTTCAGCAACGAGAAGGCCATGAGGGACGCGATCGAAGGCATGAACGGGCAGGACCTTGACGGCCGTAACATCACCGTCAACGAGGCTCAGTCCCGCGGAAGCGGTGGCGGAGGCGGCGGTGGTGGATACGGTGGCAGCCGGGGAGGCGGTGGCTACGGCTCTGGCGGCGGTGGTTATGGCGGCCGTCGTGAAGGTGGAGGCGGTGGCTACGGAAGTGGCGGTGGAGGCTATGGCGGTGGTGGCCGTCGCGAGGGTGGAGGCGGCGGATACAGCCGTGGAGGTGGAAGCTATGGAAGCGGCGGTGGTGGTGGCTACGGAGGTGGCGGCCGGGACCGTGGATCTGATGGCGGTAGCTGGAGGAGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03040 map03040
Pfam Domains
Protein Families
RRM_1

Protein Analysis

176

Amino Acids

17.14

Weight (kDa)

6.35

Isoelectric Point (pI)

60.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_1 PF00076 11 - 80 3.2e-22 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 139
AccII CGCG 4 cut(s) 129, 194, 261, 414
AclWI GGATC 1 cut(s) 511
AcoI YGGCCR 4 cut(s) 226, 346, 406, 490
AcuI CTGAAG 1 cut(s) 151
AfiI CCNNNNNNNGG 3 cut(s) 75, 76, 415
AjnI CCWGG 1 cut(s) 47
AluBI AGCT 2 cut(s) 453, 519
AluI AGCT 2 cut(s) 453, 519
Alw26I GTCTC 1 cut(s) 125
AlwI GGATC 1 cut(s) 511
AoxI GGCC 9 cut(s) 3, 51, 66, 78, 180, 226, 346, 406, 490
ApeKI GCWGC 1 cut(s) 300
AspS9I GGNCC 5 cut(s) 51, 67, 78, 217, 496
AsuC2I CCSGG 2 cut(s) 305, 494
AsuHPI GGTGA 2 cut(s) 154, 229
AvaII GGWCC 2 cut(s) 217, 496
BaeI ACNNNNGTAYC 2 cut(s) 424, 457
BanII GRGCYC 1 cut(s) 45
BbvI GCAGC 1 cut(s) 312
BccI CCATC 1 cut(s) 503
BceAI ACGGC 6 cut(s) 213, 241, 333, 337, 393, 423
BciT130I CCWGG 1 cut(s) 49
BciVI GTATCC 2 cut(s) 284, 425
BcnI CCSGG 2 cut(s) 305, 494
BcoDI GTCTC 1 cut(s) 125
BfuI GTATCC 2 cut(s) 284, 425
BglI GCCNNNNNGGC 1 cut(s) 309
BisI GCNGC 7 cut(s) 280, 301, 331, 346, 427, 463, 490
BlsI GCNGC 7 cut(s) 281, 302, 332, 347, 428, 464, 491
Bme1390I CCNGG 3 cut(s) 49, 305, 494
Bme18I GGWCC 2 cut(s) 217, 496
BmgT120I GGNCC 5 cut(s) 51, 67, 78, 217, 496
BmiI GGNNCC 1 cut(s) 497
BmrFI CCNGG 3 cut(s) 49, 305, 494
BpuMI CCSGG 2 cut(s) 305, 494
BsaI GGTCTC 1 cut(s) 125
BsaJI CCNNGG 5 cut(s) 48, 259, 304, 439, 499
BsaWI WCCGGW 1 cut(s) 134
Bsc4I CCNNNNNNNGG 3 cut(s) 75, 76, 415
BseBI CCWGG 1 cut(s) 49
BseDI CCNNGG 5 cut(s) 48, 259, 304, 439, 499
BseLI CCNNNNNNNGG 3 cut(s) 75, 76, 415
BseMII CTCAG 1 cut(s) 266
BseX3I CGGCCG 3 cut(s) 226, 346, 490
BseXI GCAGC 1 cut(s) 312
Bsh1236I CGCG 4 cut(s) 129, 194, 261, 414
Bsh1285I CGRYCG 5 cut(s) 127, 198, 229, 349, 493
BshFI GGCC 9 cut(s) 5, 53, 68, 80, 182, 228, 348, 408, 492
BsiEI CGRYCG 5 cut(s) 127, 198, 229, 349, 493
BsiSI CCGG 3 cut(s) 135, 304, 493
BslFI GGGAC 3 cut(s) 203, 241, 509
BslI CCNNNNNNNGG 3 cut(s) 75, 76, 415
BsmAI GTCTC 1 cut(s) 125
BsmFI GGGAC 3 cut(s) 203, 241, 509
BsnI GGCC 9 cut(s) 5, 53, 68, 80, 182, 228, 348, 408, 492
Bso31I GGTCTC 1 cut(s) 125
Bsp1286I GDGCHC 1 cut(s) 45
Bsp143I GATC 5 cut(s) 15, 99, 114, 195, 503
Bsp68I TCGCGA 1 cut(s) 414
BspANI GGCC 9 cut(s) 5, 53, 68, 80, 182, 228, 348, 408, 492
BspCNI CTCAG 1 cut(s) 265
BspFNI CGCG 4 cut(s) 129, 194, 261, 414
BspLI GGNNCC 1 cut(s) 497
BspPI GGATC 1 cut(s) 511
BspTNI GGTCTC 1 cut(s) 125
BssECI CCNNGG 5 cut(s) 48, 259, 304, 439, 499
BssMI GATC 5 cut(s) 15, 99, 114, 195, 503
Bst2UI CCWGG 1 cut(s) 49
Bst4CI ACNGT 3 cut(s) 241, 296, 500
BstC8I GCNNGC 1 cut(s) 45
BstDEI CTNAG 1 cut(s) 252
BstDSI CCRYGG 3 cut(s) 259, 439, 499
BstFNI CGCG 4 cut(s) 129, 194, 261, 414
BstKTI GATC 5 cut(s) 18, 102, 117, 198, 506
BstMAI GTCTC 1 cut(s) 125
BstMBI GATC 5 cut(s) 15, 99, 114, 195, 503
BstMCI CGRYCG 5 cut(s) 127, 198, 229, 349, 493
BstMWI GCNNNNNNNGC 7 cut(s) 279, 309, 330, 390, 405, 435, 459
BstNI CCWGG 1 cut(s) 49
BstSCI CCNGG 3 cut(s) 47, 303, 492
BstUI CGCG 4 cut(s) 129, 194, 261, 414
BstV1I GCAGC 1 cut(s) 312
BstX2I RGATCY 1 cut(s) 503
BstYI RGATCY 1 cut(s) 503
BstZI CGGCCG 3 cut(s) 226, 346, 490
BsuI GTATCC 2 cut(s) 284, 425
BsuRI GGCC 9 cut(s) 5, 53, 68, 80, 182, 228, 348, 408, 492
BtgI CCRYGG 3 cut(s) 259, 439, 499
BtuMI TCGCGA 1 cut(s) 414
Cac8I GCNNGC 1 cut(s) 45
Cfr13I GGNCC 5 cut(s) 51, 67, 78, 217, 496
Cfr42I CCGCGG 1 cut(s) 262
CseI GACGC 1 cut(s) 200
CviAII CATG 2 cut(s) 184, 205
DdeI CTNAG 1 cut(s) 252
DpnI GATC 5 cut(s) 17, 101, 116, 197, 505
DpnII GATC 5 cut(s) 15, 99, 114, 195, 503
DrdI GACNNNNNNGTC 1 cut(s) 139
DseDI GACNNNNNNGTC 1 cut(s) 139
EaeI YGGCCR 4 cut(s) 226, 346, 406, 490
EagI CGGCCG 3 cut(s) 226, 346, 490
EciI GGCGGA 2 cut(s) 288, 444
EclXI CGGCCG 3 cut(s) 226, 346, 490
Eco24I GRGCYC 1 cut(s) 45
Eco31I GGTCTC 1 cut(s) 125
Eco47I GGWCC 2 cut(s) 217, 496
Eco52I CGGCCG 3 cut(s) 226, 346, 490
Eco57I CTGAAG 1 cut(s) 151
EcoO109I RGGNCCY 3 cut(s) 67, 78, 217
EcoRII CCWGG 1 cut(s) 47
EcoT38I GRGCYC 1 cut(s) 45
FaeI CATG 2 cut(s) 187, 208
FaiI YATR 5 cut(s) 185, 206, 342, 396, 456
FaqI GGGAC 3 cut(s) 203, 241, 509
FatI CATG 2 cut(s) 183, 204
FauI CCCGC 1 cut(s) 266
Fnu4HI GCNGC 7 cut(s) 280, 301, 331, 346, 427, 463, 490
FriOI GRGCYC 1 cut(s) 45
Fsp4HI GCNGC 7 cut(s) 280, 301, 331, 346, 427, 463, 490
GluI GCNGC 7 cut(s) 280, 301, 331, 346, 427, 463, 490
HaeIII GGCC 9 cut(s) 5, 53, 68, 80, 182, 228, 348, 408, 492
HapII CCGG 3 cut(s) 135, 304, 493
HgaI GACGC 1 cut(s) 200
Hin1II CATG 2 cut(s) 187, 208
HincII GTYRAC 1 cut(s) 244
HindII GTYRAC 1 cut(s) 244
HinfI GANTC 3 cut(s) 107, 150, 156
HpaII CCGG 3 cut(s) 135, 304, 493
HphI GGTGA 2 cut(s) 154, 229
Hpy166II GTNNAC 1 cut(s) 244
Hpy188I TCNGA 3 cut(s) 38, 155, 508
Hpy188III TCNNGA 2 cut(s) 353, 413
Hpy8I GTNNAC 1 cut(s) 244
Hpy99I CGWCG 3 cut(s) 38, 354, 414
HpyAV CCTTC 5 cut(s) 132, 172, 175, 194, 350
HpyCH4III ACNGT 3 cut(s) 241, 296, 500
HpyF10VI GCNNNNNNNGC 7 cut(s) 279, 309, 330, 390, 405, 435, 459
HpyF3I CTNAG 1 cut(s) 252
Hsp92II CATG 2 cut(s) 187, 208
KspI CCGCGG 1 cut(s) 262
Kzo9I GATC 5 cut(s) 15, 99, 114, 195, 503
LmnI GCTCC 1 cut(s) 91
LpnPI CCDG 8 cut(s) 34, 61, 148, 200, 312, 317, 505, 506
Lsp1109I GCAGC 1 cut(s) 312
MaeIII GTNAC 2 cut(s) 160, 230
MalI GATC 5 cut(s) 17, 101, 116, 197, 505
MboI GATC 5 cut(s) 15, 99, 114, 195, 503
MboII GAAGA 1 cut(s) 124
MflI RGATCY 1 cut(s) 503
MhlI GDGCHC 1 cut(s) 45
MmeI TCCRAC 1 cut(s) 16
MspA1I CMGCKG 1 cut(s) 261
MspI CCGG 3 cut(s) 135, 304, 493
MspR9I CCNGG 3 cut(s) 49, 305, 494
MvaI CCWGG 1 cut(s) 49
MvnI CGCG 4 cut(s) 129, 194, 261, 414
MwoI GCNNNNNNNGC 7 cut(s) 279, 309, 330, 390, 405, 435, 459
NciI CCSGG 2 cut(s) 305, 494
NdeII GATC 5 cut(s) 15, 99, 114, 195, 503
NlaIII CATG 2 cut(s) 187, 208
NlaIV GGNNCC 1 cut(s) 497
NmeAIII GCCGAG 1 cut(s) 37
NmuCI GTSAC 1 cut(s) 160
NruI TCGCGA 1 cut(s) 414
PcsI WCGNNNNNNNCGW 1 cut(s) 69
PfeI GAWTC 3 cut(s) 107, 150, 156
PkrI GCNGC 7 cut(s) 281, 302, 332, 347, 428, 464, 491
Ple19I CGATCG 1 cut(s) 198
PpuMI RGGWCCY 1 cut(s) 217
Psp5II RGGWCCY 1 cut(s) 217
Psp6I CCWGG 1 cut(s) 47
PspGI CCWGG 1 cut(s) 47
PspN4I GGNNCC 1 cut(s) 497
PspPI GGNCC 5 cut(s) 51, 67, 78, 217, 496
PspPPI RGGWCCY 1 cut(s) 217
PsuI RGATCY 1 cut(s) 503
PvuI CGATCG 1 cut(s) 198
RruI TCGCGA 1 cut(s) 414
SacII CCGCGG 1 cut(s) 262
SatI GCNGC 7 cut(s) 280, 301, 331, 346, 427, 463, 490
Sau3AI GATC 5 cut(s) 15, 99, 114, 195, 503
Sau96I GGNCC 5 cut(s) 51, 67, 78, 217, 496
ScrFI CCNGG 3 cut(s) 49, 305, 494
SduI GDGCHC 1 cut(s) 45
SetI ASST 8 cut(s) 143, 167, 222, 361, 448, 455, 487, 521
Sfr303I CCGCGG 1 cut(s) 262
SgrBI CCGCGG 1 cut(s) 262
SinI GGWCC 2 cut(s) 217, 496
StyD4I CCNGG 3 cut(s) 47, 303, 492
TaaI ACNGT 3 cut(s) 241, 296, 500
TaqI TCGA 5 cut(s) 18, 72, 105, 110, 198
TauI GCSGC 6 cut(s) 282, 333, 348, 429, 465, 492
TfiI GAWTC 3 cut(s) 107, 150, 156
TseFI GTSAC 1 cut(s) 160
TseI GCWGC 1 cut(s) 300
Tsp45I GTSAC 1 cut(s) 160
TspDTI ATGAA 1 cut(s) 221
TspGWI ACGGA 3 cut(s) 14, 390, 495
VpaK11BI GGWCC 2 cut(s) 217, 496
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.