FvH4_2g08880

RNA recognition motif

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0004608
Physical Location & Seq
Forward (+)
7763094 .. 7764632
1539 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g08880.t1

Sequence Viewer

Length: 534 bp
ATGGCCTCTGCCGAGATCGAGTTCCGTTGCTTCGTCGGAGGGCTCGCCTGGGCCACCGACAACGATGCGCTCGAAAGGGCCTTCGCTCCCTTTGGCGAGATCATCGAATCGAAGATCATCAACGACCGTGAGACCGGAAGGTCCAGGGGTTTTGGATTCGTCACCTTCAGCAACGAGAAGGCCATGAGGGATGCGATTGAGGGCATGAACGGCCAGGATCTAGACGGCCGTAACATCACCGTCAATGAGGCTCAGTCTCGCGGAAGCGGTGGAGGCGGCGGCGGTGGCGGTTATGGTGGAAGCCGGGGAGGCGGTGGCTATGGAGGCGGAGGAGGATATGGCGGTGGTGCCCGTCGTGAGGGTGGAGGTGGAGGCTACGGAAGTGGCGGAGGAGGATATGGCGGTGGTGGCCGCCGTGAAGGTGGTGGTGGGGGCTACAGCCGGGGAGGTGGTAGCTATGGAAGTGGTGGTGGTGGTGGATATGGAGGTGGTGGCCGTGACCGTGGTTCTGACGGTGGCAGCTGGAGGAGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03040 map03040
Pfam Domains
Protein Families
RRM_1

Protein Analysis

178

Amino Acids

17.17

Weight (kDa)

6.34

Isoelectric Point (pI)

61.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_1 PF00076 11 - 80 4.1e-22 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 139
AccB1I GGYRCC 1 cut(s) 347
AccII CGCG 1 cut(s) 261
AclWI GGATC 1 cut(s) 225
AcoI YGGCCR 4 cut(s) 211, 226, 409, 493
AcuI CTGAAG 1 cut(s) 151
AfiI CCNNNNNNNGG 1 cut(s) 358
AjnI CCWGG 3 cut(s) 47, 143, 213
AluBI AGCT 2 cut(s) 456, 522
AluI AGCT 2 cut(s) 456, 522
Alw26I GTCTC 2 cut(s) 125, 261
AlwI GGATC 1 cut(s) 225
AoxI GGCC 8 cut(s) 3, 51, 78, 180, 211, 226, 409, 493
ApeKI GCWGC 1 cut(s) 519
AspLEI GCGC 1 cut(s) 70
AspS9I GGNCC 3 cut(s) 51, 78, 141
AsuC2I CCSGG 2 cut(s) 305, 443
AsuHPI GGTGA 2 cut(s) 154, 229
AvaII GGWCC 1 cut(s) 141
BaeGI GKGCMC 1 cut(s) 352
BanI GGYRCC 1 cut(s) 347
BanII GRGCYC 1 cut(s) 45
BceAI ACGGC 5 cut(s) 213, 226, 241, 399, 480
BcgI CGANNNNNNTGC 2 cut(s) 47, 81
BciT130I CCWGG 3 cut(s) 49, 145, 215
BcnI CCSGG 2 cut(s) 305, 443
BcoDI GTCTC 2 cut(s) 125, 261
BfaI CTAG 1 cut(s) 221
BfmI CTRYAG 1 cut(s) 436
BglI GCCNNNNNGGC 1 cut(s) 309
BisI GCNGC 4 cut(s) 277, 280, 412, 520
BlsI GCNGC 4 cut(s) 278, 281, 413, 521
Bme1390I CCNGG 5 cut(s) 49, 145, 215, 305, 443
Bme18I GGWCC 1 cut(s) 141
BmgT120I GGNCC 3 cut(s) 51, 78, 141
BmiI GGNNCC 1 cut(s) 349
BmrFI CCNGG 5 cut(s) 49, 145, 215, 305, 443
BmsI GCATC 2 cut(s) 55, 181
BpuMI CCSGG 2 cut(s) 305, 443
BsaI GGTCTC 1 cut(s) 125
BsaJI CCNNGG 5 cut(s) 48, 144, 304, 442, 502
BsaWI WCCGGW 1 cut(s) 134
Bsc4I CCNNNNNNNGG 1 cut(s) 358
BseBI CCWGG 3 cut(s) 49, 145, 215
BseDI CCNNGG 5 cut(s) 48, 144, 304, 442, 502
BseGI GGATG 1 cut(s) 196
BseLI CCNNNNNNNGG 1 cut(s) 358
BseMII CTCAG 1 cut(s) 266
BseRI GAGGAG 2 cut(s) 345, 405
BseSI GKGCMC 1 cut(s) 352
BseX3I CGGCCG 1 cut(s) 226
Bsh1236I CGCG 1 cut(s) 261
Bsh1285I CGRYCG 2 cut(s) 127, 229
BshFI GGCC 8 cut(s) 5, 53, 80, 182, 213, 228, 411, 495
BshNI GGYRCC 1 cut(s) 347
BsiEI CGRYCG 2 cut(s) 127, 229
BsiSI CCGG 3 cut(s) 135, 304, 442
BslI CCNNNNNNNGG 1 cut(s) 358
BsmAI GTCTC 2 cut(s) 125, 261
BsnI GGCC 8 cut(s) 5, 53, 80, 182, 213, 228, 411, 495
Bso31I GGTCTC 1 cut(s) 125
Bsp1286I GDGCHC 2 cut(s) 45, 352
Bsp143I GATC 4 cut(s) 15, 99, 114, 217
BspANI GGCC 8 cut(s) 5, 53, 80, 182, 213, 228, 411, 495
BspCNI CTCAG 1 cut(s) 265
BspFNI CGCG 1 cut(s) 261
BspLI GGNNCC 1 cut(s) 349
BspPI GGATC 1 cut(s) 225
BspT107I GGYRCC 1 cut(s) 347
BspTNI GGTCTC 1 cut(s) 125
BssECI CCNNGG 5 cut(s) 48, 144, 304, 442, 502
BssMI GATC 4 cut(s) 15, 99, 114, 217
Bst2UI CCWGG 3 cut(s) 49, 145, 215
Bst4CI ACNGT 4 cut(s) 128, 241, 503, 515
BstC8I GCNNGC 1 cut(s) 45
BstDEI CTNAG 1 cut(s) 252
BstDSI CCRYGG 1 cut(s) 502
BstF5I GGATG 1 cut(s) 196
BstFNI CGCG 1 cut(s) 261
BstHHI GCGC 1 cut(s) 70
BstKTI GATC 4 cut(s) 18, 102, 117, 220
BstMAI GTCTC 2 cut(s) 125, 261
BstMBI GATC 4 cut(s) 15, 99, 114, 217
BstMCI CGRYCG 2 cut(s) 127, 229
BstMWI GCNNNNNNNGC 6 cut(s) 210, 273, 285, 309, 324, 408
BstNI CCWGG 3 cut(s) 49, 145, 215
BstSCI CCNGG 5 cut(s) 47, 143, 213, 303, 441
BstSFI CTRYAG 1 cut(s) 436
BstSLI GKGCMC 1 cut(s) 352
BstUI CGCG 1 cut(s) 261
BstX2I RGATCY 1 cut(s) 217
BstYI RGATCY 1 cut(s) 217
BstZI CGGCCG 1 cut(s) 226
BsuRI GGCC 8 cut(s) 5, 53, 80, 182, 213, 228, 411, 495
BtgI CCRYGG 1 cut(s) 502
BtsCI GGATG 1 cut(s) 196
Cac8I GCNNGC 1 cut(s) 45
CfoI GCGC 1 cut(s) 70
Cfr13I GGNCC 3 cut(s) 51, 78, 141
CviAII CATG 2 cut(s) 184, 205
DdeI CTNAG 1 cut(s) 252
DpnI GATC 4 cut(s) 17, 101, 116, 219
DpnII GATC 4 cut(s) 15, 99, 114, 217
DrdI GACNNNNNNGTC 1 cut(s) 139
DseDI GACNNNNNNGTC 1 cut(s) 139
EaeI YGGCCR 4 cut(s) 211, 226, 409, 493
EagI CGGCCG 1 cut(s) 226
EciI GGCGGA 2 cut(s) 342, 402
EclXI CGGCCG 1 cut(s) 226
Eco24I GRGCYC 1 cut(s) 45
Eco31I GGTCTC 1 cut(s) 125
Eco47I GGWCC 1 cut(s) 141
Eco52I CGGCCG 1 cut(s) 226
Eco57I CTGAAG 1 cut(s) 151
EcoO109I RGGNCCY 1 cut(s) 78
EcoRII CCWGG 3 cut(s) 47, 143, 213
EcoT38I GRGCYC 1 cut(s) 45
FaeI CATG 2 cut(s) 187, 208
FaiI YATR 8 cut(s) 185, 206, 294, 321, 339, 399, 459, 483
FatI CATG 2 cut(s) 183, 204
Fnu4HI GCNGC 4 cut(s) 277, 280, 412, 520
FokI GGATG 1 cut(s) 203
FriOI GRGCYC 1 cut(s) 45
Fsp4HI GCNGC 4 cut(s) 277, 280, 412, 520
FspBI CTAG 1 cut(s) 221
GlaI GCGC 1 cut(s) 69
GluI GCNGC 4 cut(s) 277, 280, 412, 520
HaeIII GGCC 8 cut(s) 5, 53, 80, 182, 213, 228, 411, 495
HapII CCGG 3 cut(s) 135, 304, 442
HhaI GCGC 1 cut(s) 70
Hin1II CATG 2 cut(s) 187, 208
Hin6I GCGC 1 cut(s) 68
HinP1I GCGC 1 cut(s) 68
HinfI GANTC 2 cut(s) 107, 156
HpaII CCGG 3 cut(s) 135, 304, 442
HphI GGTGA 2 cut(s) 154, 229
Hpy188I TCNGA 2 cut(s) 38, 511
Hpy188III TCNNGA 2 cut(s) 221, 356
Hpy99I CGWCG 2 cut(s) 38, 357
HpyAV CCTTC 5 cut(s) 91, 132, 172, 175, 413
HpyCH4III ACNGT 4 cut(s) 128, 241, 503, 515
HpyF10VI GCNNNNNNNGC 6 cut(s) 210, 273, 285, 309, 324, 408
HpyF3I CTNAG 1 cut(s) 252
Hsp92II CATG 2 cut(s) 187, 208
HspAI GCGC 1 cut(s) 68
Kzo9I GATC 4 cut(s) 15, 99, 114, 217
LmnI GCTCC 1 cut(s) 91
LweI GCATC 2 cut(s) 55, 181
MaeI CTAG 1 cut(s) 221
MaeIII GTNAC 3 cut(s) 160, 230, 497
MalI GATC 4 cut(s) 17, 101, 116, 219
MboI GATC 4 cut(s) 15, 99, 114, 217
MboII GAAGA 1 cut(s) 124
MflI RGATCY 1 cut(s) 217
MhlI GDGCHC 2 cut(s) 45, 352
MmeI TCCRAC 1 cut(s) 16
MspA1I CMGCKG 1 cut(s) 522
MspI CCGG 3 cut(s) 135, 304, 442
MspR9I CCNGG 5 cut(s) 49, 145, 215, 305, 443
MvaI CCWGG 3 cut(s) 49, 145, 215
MvnI CGCG 1 cut(s) 261
MwoI GCNNNNNNNGC 6 cut(s) 210, 273, 285, 309, 324, 408
NciI CCSGG 2 cut(s) 305, 443
NdeII GATC 4 cut(s) 15, 99, 114, 217
NlaIII CATG 2 cut(s) 187, 208
NlaIV GGNNCC 1 cut(s) 349
NmeAIII GCCGAG 1 cut(s) 37
NmuCI GTSAC 2 cut(s) 160, 497
PcsI WCGNNNNNNNCGW 1 cut(s) 69
PfeI GAWTC 2 cut(s) 107, 156
PkrI GCNGC 4 cut(s) 278, 281, 413, 521
Psp6I CCWGG 3 cut(s) 47, 143, 213
PspGI CCWGG 3 cut(s) 47, 143, 213
PspN4I GGNNCC 1 cut(s) 349
PspPI GGNCC 3 cut(s) 51, 78, 141
PsuI RGATCY 1 cut(s) 217
PvuII CAGCTG 1 cut(s) 522
SatI GCNGC 4 cut(s) 277, 280, 412, 520
Sau3AI GATC 4 cut(s) 15, 99, 114, 217
Sau96I GGNCC 3 cut(s) 51, 78, 141
ScrFI CCNGG 5 cut(s) 49, 145, 215, 305, 443
SduI GDGCHC 2 cut(s) 45, 352
SetI ASST 8 cut(s) 143, 167, 370, 424, 451, 458, 490, 524
SfaNI GCATC 2 cut(s) 55, 181
SfcI CTRYAG 1 cut(s) 436
SinI GGWCC 1 cut(s) 141
SspMI CTAG 1 cut(s) 221
StyD4I CCNGG 5 cut(s) 47, 143, 213, 303, 441
TaaI ACNGT 4 cut(s) 128, 241, 503, 515
TaqI TCGA 4 cut(s) 18, 72, 105, 110
TauI GCSGC 3 cut(s) 279, 282, 414
TfiI GAWTC 2 cut(s) 107, 156
TseFI GTSAC 2 cut(s) 160, 497
TseI GCWGC 1 cut(s) 519
Tsp45I GTSAC 2 cut(s) 160, 497
TspDTI ATGAA 1 cut(s) 221
TspGWI ACGGA 2 cut(s) 14, 393
VpaK11BI GGWCC 1 cut(s) 141
XbaI TCTAGA 1 cut(s) 220
XspI CTAG 1 cut(s) 221
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.