Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0004608

Physical Location & Seq

Genomic Coordinates Reverse (-)

12860412 .. 12861587

Gene Structure 1176 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G096400.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 531 bp

ATGGCCTCTGCCGAGATCGAGTTCCGTTGCTTCGTCGGAGGGCTCGCCTGGGCCACCGACAATGATGCGCTGGAGAGGGCCTTTTCTCCGTTCGGTGAGATCATCGAATCGAAGATCATCAACGACCGTGAGACCGGGAGGTCCAGGGGCTTTGGCTTCGTCACCTTCAGCAATGAGAAGGCCATGAGGGACGCGATCGAAGGCATGAACGGCCAGAACCTCGACGGCCGCAACATCACCGTTAACGAGGCTCAGTCTCGTGGAAGCGGCGGTGGTGGTGGCGGTAACGGAGGAGGTTACAGCCGCGGAGGTGGCGGCGGGGGATATGGCGGTGGCTACGGAGGTGGCGGCCGACGTGAAGGTGGCGGTGGTGGCTACAGCCGTGGAGGCGGCGGTGGTGGATATGGCAGTGGAGGTGGTGGATATGGCGGTGGTGGCCGTCGTGAAGGTGGGTATGGAGGTGGTGAGGGCGGCGGCGCTCGCTATTCCAGGGGCAGCGGTGGCTCTGAAGGCGGCAGCTGGAGGAGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

RRM_1

Protein Analysis

177

Amino Acids

17.21

Weight (kDa)

7.84

Isoelectric Point (pI)

61.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004608)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G21660 AT2G21660
fragaria_vesca	FvH4_2g08880 FvH4_2g08880 FvH4_2g08880 FvH4_2g08880
malus_domestica	MD10G1075500.v1.1
prunus_persica	Prupe.1G176300_v2.0.a1 Prupe.2G011900_v2.0.a1 Prupe.3G163600_v2.0.a1 Prupe.5G141500_v2.0.a1 Prupe.7G178900_v2.0.a1 Prupe.8G096400_v2.0.a1 Prupe.8G096400_v2.0.a1 Prupe.8G096400_v2.0.a1 Prupe.8G096400_v2.0.a1 Prupe.8G096400_v2.0.a1 Prupe.8G096400_v2.0.a1 Prupe.8G096400_v2.0.a1
pyrus_communis	pycom05g05700 pycom10g05900
rosa_chinensis	RchiOBHm_Chr6g0264491 RchiOBHm_Chr7g0233551
rosa_multiflora	Rmu_sc0004946.1_g000027
rosa_roxburghii	Rroxscaffold_176G00431830
rosa_rugosa	Rorug06G0013300
rosa_samantha	Rh6AG132700 Rh6BG130100 Rh6CG128400 Rh6DG115500
rosa_wichuraiana	Rw0G020850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	139
AccII	CGCG	2 cut(s)	194, 306
AcoI	YGGCCR	4 cut(s)	211, 226, 349, 436
AcuI	CTGAAG	2 cut(s)	151, 528
AjiI	CACGTC	1 cut(s)	356
AjnI	CCWGG	3 cut(s)	47, 143, 488
AluBI	AGCT	1 cut(s)	519
AluI	AGCT	1 cut(s)	519
Alw26I	GTCTC	2 cut(s)	125, 261
AoxI	GGCC	8 cut(s)	3, 51, 78, 180, 211, 226, 349, 436
ApeKI	GCWGC	2 cut(s)	495, 516
AspLEI	GCGC	2 cut(s)	70, 479
AspS9I	GGNCC	3 cut(s)	51, 78, 141
AsuC2I	CCSGG	1 cut(s)	136
AsuHPI	GGTGA	4 cut(s)	107, 154, 229, 476
AvaII	GGWCC	1 cut(s)	141
BanII	GRGCYC	1 cut(s)	45
BauI	CACGAG	1 cut(s)	258
BbvI	GCAGC	1 cut(s)	507
BceAI	ACGGC	4 cut(s)	226, 241, 366, 423
BcgI	CGANNNNNNTGC	2 cut(s)	47, 81
BciT130I	CCWGG	3 cut(s)	49, 145, 490
BcnI	CCSGG	1 cut(s)	136
BcoDI	GTCTC	2 cut(s)	125, 261
BfmI	CTRYAG	1 cut(s)	376
BfoI	RGCGCY	1 cut(s)	480
BglI	GCCNNNNNGGC	1 cut(s)	387
Bme1390I	CCNGG	4 cut(s)	49, 136, 145, 490
Bme18I	GGWCC	1 cut(s)	141
BmgBI	CACGTC	1 cut(s)	356
BmgT120I	GGNCC	3 cut(s)	51, 78, 141
BmrFI	CCNGG	4 cut(s)	49, 136, 145, 490
BmsI	GCATC	1 cut(s)	55
BpmI	CTGGAG	1 cut(s)	92
BpuMI	CCSGG	1 cut(s)	136
BsaI	GGTCTC	1 cut(s)	125
BsaJI	CCNNGG	5 cut(s)	48, 144, 304, 382, 489
Bse3DI	GCAATG	1 cut(s)	178
BseBI	CCWGG	3 cut(s)	49, 145, 490
BseDI	CCNNGG	5 cut(s)	48, 144, 304, 382, 489
BseMI	GCAATG	1 cut(s)	178
BseMII	CTCAG	1 cut(s)	266
BseRI	GAGGAG	1 cut(s)	306
BseX3I	CGGCCG	2 cut(s)	226, 349
BseXI	GCAGC	1 cut(s)	507
Bsh1236I	CGCG	2 cut(s)	194, 306
Bsh1285I	CGRYCG	4 cut(s)	127, 198, 229, 352
BshFI	GGCC	8 cut(s)	5, 53, 80, 182, 213, 228, 351, 438
BsiEI	CGRYCG	4 cut(s)	127, 198, 229, 352
BsiSI	CCGG	1 cut(s)	135
BslFI	GGGAC	1 cut(s)	203
BsmAI	GTCTC	2 cut(s)	125, 261
BsmFI	GGGAC	1 cut(s)	203
BsnI	GGCC	8 cut(s)	5, 53, 80, 182, 213, 228, 351, 438
Bso31I	GGTCTC	1 cut(s)	125
Bsp1286I	GDGCHC	1 cut(s)	45
Bsp143I	GATC	4 cut(s)	15, 99, 114, 195
BspANI	GGCC	8 cut(s)	5, 53, 80, 182, 213, 228, 351, 438
BspCNI	CTCAG	1 cut(s)	265
BspFNI	CGCG	2 cut(s)	194, 306
BspTNI	GGTCTC	1 cut(s)	125
BsrDI	GCAATG	1 cut(s)	178
BssECI	CCNNGG	5 cut(s)	48, 144, 304, 382, 489
BssMI	GATC	4 cut(s)	15, 99, 114, 195
BssSI	CACGAG	1 cut(s)	258
Bst2BI	CACGAG	1 cut(s)	258
Bst2UI	CCWGG	3 cut(s)	49, 145, 490
Bst4CI	ACNGT	2 cut(s)	128, 241
BstC8I	GCNNGC	2 cut(s)	45, 481
BstDEI	CTNAG	1 cut(s)	252
BstDSI	CCRYGG	2 cut(s)	304, 382
BstFNI	CGCG	2 cut(s)	194, 306
BstH2I	RGCGCY	1 cut(s)	480
BstHHI	GCGC	2 cut(s)	70, 479
BstKTI	GATC	4 cut(s)	18, 102, 117, 198
BstMAI	GTCTC	2 cut(s)	125, 261
BstMBI	GATC	4 cut(s)	15, 99, 114, 195
BstMCI	CGRYCG	4 cut(s)	127, 198, 229, 352
BstMWI	GCNNNNNNNGC	8 cut(s)	210, 312, 372, 387, 435, 480, 501, 510
BstNI	CCWGG	3 cut(s)	49, 145, 490
BstSCI	CCNGG	4 cut(s)	47, 134, 143, 488
BstSFI	CTRYAG	1 cut(s)	376
BstUI	CGCG	2 cut(s)	194, 306
BstV1I	GCAGC	1 cut(s)	507
BstZI	CGGCCG	2 cut(s)	226, 349
BsuRI	GGCC	8 cut(s)	5, 53, 80, 182, 213, 228, 351, 438
BtgI	CCRYGG	2 cut(s)	304, 382
BtrI	CACGTC	1 cut(s)	356
BtsI	GCAGTG	1 cut(s)	415
BtsIMutI	CAGTG	1 cut(s)	415
Cac8I	GCNNGC	2 cut(s)	45, 481
CfoI	GCGC	2 cut(s)	70, 479
Cfr13I	GGNCC	3 cut(s)	51, 78, 141
Cfr42I	CCGCGG	1 cut(s)	307
CseI	GACGC	1 cut(s)	200
CviAII	CATG	2 cut(s)	184, 205
DdeI	CTNAG	1 cut(s)	252
DpnI	GATC	4 cut(s)	17, 101, 116, 197
DpnII	GATC	4 cut(s)	15, 99, 114, 195
DrdI	GACNNNNNNGTC	1 cut(s)	139
DseDI	GACNNNNNNGTC	1 cut(s)	139
EaeI	YGGCCR	4 cut(s)	211, 226, 349, 436
EagI	CGGCCG	2 cut(s)	226, 349
EclXI	CGGCCG	2 cut(s)	226, 349
Eco24I	GRGCYC	1 cut(s)	45
Eco31I	GGTCTC	1 cut(s)	125
Eco47I	GGWCC	1 cut(s)	141
Eco52I	CGGCCG	2 cut(s)	226, 349
Eco57I	CTGAAG	2 cut(s)	151, 528
EcoO109I	RGGNCCY	1 cut(s)	78
EcoRII	CCWGG	3 cut(s)	47, 143, 488
EcoT38I	GRGCYC	1 cut(s)	45
FaeI	CATG	2 cut(s)	187, 208
FaiI	YATR	6 cut(s)	185, 206, 327, 405, 426, 456
FaqI	GGGAC	1 cut(s)	203
FatI	CATG	2 cut(s)	183, 204
FauI	CCCGC	1 cut(s)	311
FriOI	GRGCYC	1 cut(s)	45
GlaI	GCGC	2 cut(s)	69, 478
GsuI	CTGGAG	1 cut(s)	92
HaeII	RGCGCY	1 cut(s)	480
HaeIII	GGCC	8 cut(s)	5, 53, 80, 182, 213, 228, 351, 438
HapII	CCGG	1 cut(s)	135
HgaI	GACGC	1 cut(s)	200
HhaI	GCGC	2 cut(s)	70, 479
Hin1II	CATG	2 cut(s)	187, 208
Hin6I	GCGC	2 cut(s)	68, 477
HinP1I	GCGC	2 cut(s)	68, 477
HincII	GTYRAC	1 cut(s)	244
HindII	GTYRAC	1 cut(s)	244
HinfI	GANTC	1 cut(s)	107
HpaI	GTTAAC	1 cut(s)	244
HpaII	CCGG	1 cut(s)	135
HphI	GGTGA	4 cut(s)	107, 154, 229, 476
Hpy166II	GTNNAC	1 cut(s)	244
Hpy188I	TCNGA	2 cut(s)	38, 508
Hpy188III	TCNNGA	1 cut(s)	443
Hpy8I	GTNNAC	1 cut(s)	244
Hpy99I	CGWCG	4 cut(s)	38, 227, 357, 444
HpyAV	CCTTC	6 cut(s)	172, 175, 194, 353, 440, 503
HpyCH4III	ACNGT	2 cut(s)	128, 241
HpyCH4IV	ACGT	1 cut(s)	355
HpyF10VI	GCNNNNNNNGC	8 cut(s)	210, 312, 372, 387, 435, 480, 501, 510
HpyF3I	CTNAG	1 cut(s)	252
HpySE526I	ACGT	1 cut(s)	355
Hsp92II	CATG	2 cut(s)	187, 208
HspAI	GCGC	2 cut(s)	68, 477
KspAI	GTTAAC	1 cut(s)	244
KspI	CCGCGG	1 cut(s)	307
Kzo9I	GATC	4 cut(s)	15, 99, 114, 195
Lsp1109I	GCAGC	1 cut(s)	507
LweI	GCATC	1 cut(s)	55
MaeII	ACGT	1 cut(s)	355
MaeIII	GTNAC	3 cut(s)	160, 284, 296
MalI	GATC	4 cut(s)	17, 101, 116, 197
MboI	GATC	4 cut(s)	15, 99, 114, 195
MboII	GAAGA	1 cut(s)	124
MhlI	GDGCHC	1 cut(s)	45
MmeI	TCCRAC	1 cut(s)	16
MseI	TTAA	2 cut(s)	243, 529
MspA1I	CMGCKG	3 cut(s)	306, 498, 519
MspI	CCGG	1 cut(s)	135
MspR9I	CCNGG	4 cut(s)	49, 136, 145, 490
MvaI	CCWGG	3 cut(s)	49, 145, 490
MvnI	CGCG	2 cut(s)	194, 306
MwoI	GCNNNNNNNGC	8 cut(s)	210, 312, 372, 387, 435, 480, 501, 510
NciI	CCSGG	1 cut(s)	136
NdeII	GATC	4 cut(s)	15, 99, 114, 195
NlaIII	CATG	2 cut(s)	187, 208
NmeAIII	GCCGAG	1 cut(s)	37
NmuCI	GTSAC	1 cut(s)	160
PfeI	GAWTC	1 cut(s)	107
Ple19I	CGATCG	1 cut(s)	198
Psp6I	CCWGG	3 cut(s)	47, 143, 488
PspGI	CCWGG	3 cut(s)	47, 143, 488
PspPI	GGNCC	3 cut(s)	51, 78, 141
PvuI	CGATCG	1 cut(s)	198
PvuII	CAGCTG	1 cut(s)	519
SacII	CCGCGG	1 cut(s)	307
SaqAI	TTAA	2 cut(s)	243, 529
Sau3AI	GATC	4 cut(s)	15, 99, 114, 195
Sau96I	GGNCC	3 cut(s)	51, 78, 141
ScrFI	CCNGG	4 cut(s)	49, 136, 145, 490
SduI	GDGCHC	1 cut(s)	45
SfaNI	GCATC	1 cut(s)	55
SfcI	CTRYAG	1 cut(s)	376
Sfr303I	CCGCGG	1 cut(s)	307
SgrBI	CCGCGG	1 cut(s)	307
SinI	GGWCC	1 cut(s)	141
StyD4I	CCNGG	4 cut(s)	47, 134, 143, 488
TaaI	ACNGT	2 cut(s)	128, 241
TaiI	ACGT	1 cut(s)	358
TaqI	TCGA	5 cut(s)	18, 105, 110, 198, 222
TauI	GCSGC	9 cut(s)	231, 270, 306, 318, 351, 393, 474, 477, 516
TfiI	GAWTC	1 cut(s)	107
Tru1I	TTAA	2 cut(s)	243, 529
Tru9I	TTAA	2 cut(s)	243, 529
TscAI	CASTG	1 cut(s)	415
TseFI	GTSAC	1 cut(s)	160
TseI	GCWGC	2 cut(s)	495, 516
Tsp45I	GTSAC	1 cut(s)	160
TspDTI	ATGAA	1 cut(s)	221
TspGWI	ACGGA	4 cut(s)	14, 78, 303, 354
TspRI	CASTG	1 cut(s)	415
VpaK11BI	GGWCC	1 cut(s)	141

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.