AT2G27510

Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0003912
Physical Location & Seq
Reverse (-)
11757955 .. 11759588
1634 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G27510.1

Sequence Viewer

Length: 468 bp
ATGGCGACTGTACGAATCTCCTCCACTAGCATGACCAAGGCCGTTCTTAGAAGCCAGACAACCAACAAGCTCATTACTAACAAGAGCTACAACTTATCTGTTGGATCAACGAAAAGGGTTTCGAGATCTTTTGGTTTGAAATGCTCAGCGAATTCTGGTGGTGCTACGATGTCGGCGGTATACAAGGTCAAGCTCTTAGGACCTGATGGTCAAGAAGATGAGTTTGAGGTTCAAGATGATCAGTACATCTTGGATGCAGCTGAAGAGGCAGGAGTTGACTTGCCTTACTCTTGCAGAGCCGGTGCGTGTTCTACTTGCGCGGGTCAGATTGTGTCCGGCAACGTTGACCAGTCGGATGGTTCGTTTCTCGAGGATAGCCACTTGGAGAAGGGTTATGTTTTGACTTGTGTGGCTTACCCACAGTCTGACTGTGTGATCCATACCCACAAGGAAACTGAACTCTTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
ko00195 map00195
Pfam Domains
Protein Families
Fer2

Protein Analysis

155

Amino Acids

16.63

Weight (kDa)

5.12

Isoelectric Point (pI)

43.98

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Fer2 PF00111 68 - 141 1.9e-25 2Fe-2S iron-sulfur cluster binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 207
AccI GTMKAC 1 cut(s) 180
AccII CGCG 1 cut(s) 320
AciI CCGC 2 cut(s) 176, 320
AclI AACGTT 1 cut(s) 342
AclWI GGATC 2 cut(s) 112, 430
AcsI RAATTY 1 cut(s) 151
AcuI CTGAAG 1 cut(s) 282
AfaI GTAC 2 cut(s) 12, 245
AgsI TTSAA 2 cut(s) 139, 233
AluBI AGCT 4 cut(s) 70, 87, 193, 260
AluI AGCT 4 cut(s) 70, 87, 193, 260
AlwI GGATC 2 cut(s) 112, 430
Ama87I CYCGRG 1 cut(s) 368
AoxI GGCC 1 cut(s) 39
ApeKI GCWGC 1 cut(s) 257
ApoI RAATTY 1 cut(s) 151
AspLEI GCGC 1 cut(s) 320
AspS9I GGNCC 1 cut(s) 200
AvaI CYCGRG 1 cut(s) 368
AvaII GGWCC 1 cut(s) 200
BbvI GCAGC 1 cut(s) 269
BccI CCATC 2 cut(s) 200, 350
BceAI ACGGC 1 cut(s) 26
BclI TGATCA 1 cut(s) 238
BfaI CTAG 1 cut(s) 27
BglII AGATCT 1 cut(s) 125
BisI GCNGC 1 cut(s) 258
BlpI GCTNAGC 1 cut(s) 145
BlsI GCNGC 1 cut(s) 259
Bme18I GGWCC 1 cut(s) 200
BmeT110I CYCGRG 1 cut(s) 368
BmgT120I GGNCC 1 cut(s) 200
BmsI GCATC 1 cut(s) 244
Bpu1102I GCTNAGC 1 cut(s) 145
BsaJI CCNNGG 1 cut(s) 36
Bse118I RCCGGY 1 cut(s) 299
Bse1I ACTGG 1 cut(s) 349
BseDI CCNNGG 1 cut(s) 36
BseGI GGATG 2 cut(s) 259, 361
BseMII CTCAG 1 cut(s) 159
BseNI ACTGG 1 cut(s) 349
BseRI GAGGAG 1 cut(s) 10
BseXI GCAGC 1 cut(s) 269
Bsh1236I CGCG 1 cut(s) 320
BshFI GGCC 1 cut(s) 41
BsiHKCI CYCGRG 1 cut(s) 368
BsiSI CCGG 2 cut(s) 300, 336
BsnI GGCC 1 cut(s) 41
BsoBI CYCGRG 1 cut(s) 368
Bsp143I GATC 4 cut(s) 104, 125, 238, 435
Bsp1720I GCTNAGC 1 cut(s) 145
BspACI CCGC 2 cut(s) 176, 320
BspANI GGCC 1 cut(s) 41
BspCNI CTCAG 1 cut(s) 158
BspFNI CGCG 1 cut(s) 320
BspPI GGATC 2 cut(s) 112, 430
BsrFI RCCGGY 1 cut(s) 299
BsrI ACTGG 1 cut(s) 349
BssAI RCCGGY 1 cut(s) 299
BssECI CCNNGG 1 cut(s) 36
BssMI GATC 4 cut(s) 104, 125, 238, 435
BssNAI GTATAC 1 cut(s) 181
BssT1I CCWWGG 1 cut(s) 36
Bst1107I GTATAC 1 cut(s) 181
Bst4CI ACNGT 3 cut(s) 10, 423, 431
Bst6I CTCTTC 1 cut(s) 258
BstDEI CTNAG 3 cut(s) 47, 145, 196
BstF5I GGATG 2 cut(s) 259, 361
BstFNI CGCG 1 cut(s) 320
BstHHI GCGC 1 cut(s) 320
BstKTI GATC 4 cut(s) 107, 128, 241, 438
BstMBI GATC 4 cut(s) 104, 125, 238, 435
BstMWI GCNNNNNNNGC 1 cut(s) 266
BstUI CGCG 1 cut(s) 320
BstV1I GCAGC 1 cut(s) 269
BstX2I RGATCY 1 cut(s) 125
BstXI CCANNNNNNTGG 1 cut(s) 356
BstYI RGATCY 1 cut(s) 125
BstZ17I GTATAC 1 cut(s) 181
BsuRI GGCC 1 cut(s) 41
BtsCI GGATG 2 cut(s) 259, 361
CfoI GCGC 1 cut(s) 320
Cfr10I RCCGGY 1 cut(s) 299
Cfr13I GGNCC 1 cut(s) 200
Csp6I GTAC 2 cut(s) 11, 244
CviAII CATG 1 cut(s) 31
CviJI RGCY 9 cut(s) 41, 54, 70, 87, 193, 260, 299, 378, 413
CviKI_1 RGCY 9 cut(s) 41, 54, 70, 87, 193, 260, 299, 378, 413
CviQI GTAC 2 cut(s) 11, 244
DdeI CTNAG 3 cut(s) 47, 145, 196
DpnI GATC 4 cut(s) 106, 127, 240, 437
DpnII GATC 4 cut(s) 104, 125, 238, 435
DrdI GACNNNNNNGTC 1 cut(s) 207
DseDI GACNNNNNNGTC 1 cut(s) 207
Eam1104I CTCTTC 1 cut(s) 258
EarI CTCTTC 1 cut(s) 258
Eco130I CCWWGG 1 cut(s) 36
Eco47I GGWCC 1 cut(s) 200
Eco57I CTGAAG 1 cut(s) 282
Eco88I CYCGRG 1 cut(s) 368
EcoO109I RGGNCCY 1 cut(s) 200
EcoRI GAATTC 1 cut(s) 151
EcoT14I CCWWGG 1 cut(s) 36
ErhI CCWWGG 1 cut(s) 36
FaeI CATG 1 cut(s) 34
FaiI YATR 4 cut(s) 32, 181, 396, 441
FatI CATG 1 cut(s) 30
FauI CCCGC 1 cut(s) 313
FbaI TGATCA 1 cut(s) 238
FblI GTMKAC 1 cut(s) 180
Fnu4HI GCNGC 1 cut(s) 258
FokI GGATG 2 cut(s) 266, 368
Fsp4HI GCNGC 1 cut(s) 258
FspBI CTAG 1 cut(s) 27
GlaI GCGC 1 cut(s) 319
GluI GCNGC 1 cut(s) 258
HaeIII GGCC 1 cut(s) 41
HapII CCGG 2 cut(s) 300, 336
HhaI GCGC 1 cut(s) 320
Hin1II CATG 1 cut(s) 34
Hin6I GCGC 1 cut(s) 318
HinP1I GCGC 1 cut(s) 318
HincII GTYRAC 2 cut(s) 277, 346
HindII GTYRAC 2 cut(s) 277, 346
HinfI GANTC 1 cut(s) 15
HpaII CCGG 2 cut(s) 300, 336
Hpy166II GTNNAC 3 cut(s) 181, 277, 346
Hpy188I TCNGA 3 cut(s) 327, 355, 427
Hpy188III TCNNGA 4 cut(s) 123, 212, 233, 368
Hpy8I GTNNAC 3 cut(s) 181, 277, 346
HpyAV CCTTC 1 cut(s) 382
HpyCH4III ACNGT 3 cut(s) 10, 423, 431
HpyCH4IV ACGT 1 cut(s) 342
HpyCH4V TGCA 2 cut(s) 257, 294
HpyF10VI GCNNNNNNNGC 1 cut(s) 266
HpyF3I CTNAG 3 cut(s) 47, 145, 196
HpySE526I ACGT 1 cut(s) 342
Hsp92II CATG 1 cut(s) 34
HspAI GCGC 1 cut(s) 318
Ksp22I TGATCA 1 cut(s) 238
Kzo9I GATC 4 cut(s) 104, 125, 238, 435
LpnPI CCDG 7 cut(s) 68, 141, 216, 255, 313, 349, 362
Lsp1109I GCAGC 1 cut(s) 269
LweI GCATC 1 cut(s) 244
MaeI CTAG 1 cut(s) 27
MaeII ACGT 1 cut(s) 342
MalI GATC 4 cut(s) 106, 127, 240, 437
MboI GATC 4 cut(s) 104, 125, 238, 435
MboII GAAGA 3 cut(s) 227, 275, 454
MflI RGATCY 1 cut(s) 125
MluCI AATT 1 cut(s) 151
MmeI TCCRAC 2 cut(s) 82, 333
MnlI CCTC 4 cut(s) 31, 220, 259, 364
MslI CAYNNNNRTG 1 cut(s) 29
MspA1I CMGCKG 1 cut(s) 260
MspI CCGG 2 cut(s) 300, 336
MvnI CGCG 1 cut(s) 320
MwoI GCNNNNNNNGC 1 cut(s) 266
NdeII GATC 4 cut(s) 104, 125, 238, 435
NlaIII CATG 1 cut(s) 34
PaeR7I CTCGAG 1 cut(s) 368
PcsI WCGNNNNNNNCGW 1 cut(s) 359
PfeI GAWTC 1 cut(s) 15
PkrI GCNGC 1 cut(s) 259
PpuMI RGGWCCY 1 cut(s) 200
Psp1406I AACGTT 1 cut(s) 342
Psp5II RGGWCCY 1 cut(s) 200
PspPI GGNCC 1 cut(s) 200
PspPPI RGGWCCY 1 cut(s) 200
PsuI RGATCY 1 cut(s) 125
PvuII CAGCTG 1 cut(s) 260
RsaI GTAC 2 cut(s) 12, 245
RsaNI GTAC 2 cut(s) 11, 244
RseI CAYNNNNRTG 1 cut(s) 29
SatI GCNGC 1 cut(s) 258
Sau3AI GATC 4 cut(s) 104, 125, 238, 435
Sau96I GGNCC 1 cut(s) 200
SetI ASST 8 cut(s) 72, 89, 189, 195, 205, 231, 262, 345
SfaNI GCATC 1 cut(s) 244
Sfr274I CTCGAG 1 cut(s) 368
SinI GGWCC 1 cut(s) 200
SlaI CTCGAG 1 cut(s) 368
SmiMI CAYNNNNRTG 1 cut(s) 29
SmlI CTYRAG 1 cut(s) 368
SmoI CTYRAG 1 cut(s) 368
Sse9I AATT 1 cut(s) 151
SsiI CCGC 2 cut(s) 176, 320
SspMI CTAG 1 cut(s) 27
StyI CCWWGG 1 cut(s) 36
TaaI ACNGT 3 cut(s) 10, 423, 431
TaiI ACGT 1 cut(s) 345
TaqI TCGA 2 cut(s) 122, 369
TasI AATT 1 cut(s) 151
TatI WGTACW 1 cut(s) 243
TfiI GAWTC 1 cut(s) 15
TseI GCWGC 1 cut(s) 257
VpaK11BI GGWCC 1 cut(s) 200
XapI RAATTY 1 cut(s) 151
XhoI CTCGAG 1 cut(s) 368
XmiI GTMKAC 1 cut(s) 180
XspI CTAG 1 cut(s) 27
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.