Rh5AG300100

Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0003912
Physical Location & Seq
Forward (+)
42070975 .. 42075789
4815 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG300100.1

Sequence Viewer

Length: 480 bp
ATGGATTCAGGTCTAAACATGTCAACCATGACAACTGTGAACGTTCCCTCTCAGTGCATGCTCAGAAATGCACCTAAGATTCAATTCACCAGTTCTATCATTAAGTTCTCATCTTCACTTGGATCTGTGAAGAGTGTCTCCAAGTCTTTTGGCTTGAAAGCATCCGCCTCTTCCCGAACATCAATGGCAGTATACAAGATTAAGCTGATTGGGCCAGACGGTGAGGAAAACGAGTTTGATGCTCCAGATGACTCTTACATCTTGGATTCAGCTGAGAATGCAGGAGTTGAGCTGCCCTATTCTTGCAGAGCTGGGGCATGCTCCACATGTGCAGGAAAGATGGTAGCAGGTACTGTGGACCAGTCTGATGGTTCCTTCCTTGATGATAACCAAATGAAGGAAGGTTATGTGCTAACCTGCGTCTCGTACCCATCTTCAGACTGCGTGATCCACACTCACAAGGAAAGTGAACTGTATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00195 map00195
Pfam Domains
Protein Families
Fer2

Protein Analysis

159

Amino Acids

16.97

Weight (kDa)

4.81

Isoelectric Point (pI)

44.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Fer2 PF00111 72 - 144 4.6e-23 2Fe-2S iron-sulfur cluster binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 338, 425
AccI GTMKAC 1 cut(s) 192
AciI CCGC 1 cut(s) 165
AclI AACGTT 1 cut(s) 42
AclWI GGATC 2 cut(s) 130, 442
AcuI CTGAAG 1 cut(s) 420
AfaI GTAC 2 cut(s) 352, 428
AfiI CCNNNNNNNGG 1 cut(s) 397
AflIII ACRYGT 2 cut(s) 18, 326
AgsI TTSAA 2 cut(s) 83, 157
AluBI AGCT 4 cut(s) 205, 272, 292, 311
AluI AGCT 4 cut(s) 205, 272, 292, 311
Alw26I GTCTC 2 cut(s) 142, 427
AlwI GGATC 2 cut(s) 130, 442
AlwNI CAGNNNCTG 1 cut(s) 353
AoxI GGCC 1 cut(s) 212
ApeKI GCWGC 1 cut(s) 292
AspS9I GGNCC 2 cut(s) 212, 358
AsuHPI GGTGA 2 cut(s) 79, 233
AvaII GGWCC 1 cut(s) 358
BbvI GCAGC 1 cut(s) 279
BccI CCATC 3 cut(s) 334, 362, 439
BcgI CGANNNNNNTGC 2 cut(s) 221, 255
BcoDI GTCTC 2 cut(s) 142, 427
BfuAI ACCTGC 2 cut(s) 338, 425
BisI GCNGC 1 cut(s) 293
BlsI GCNGC 1 cut(s) 294
Bme18I GGWCC 1 cut(s) 358
BmgT120I GGNCC 2 cut(s) 212, 358
BmiI GGNNCC 1 cut(s) 373
BmsI GCATC 2 cut(s) 170, 229
BpmI CTGGAG 1 cut(s) 228
Bsc4I CCNNNNNNNGG 1 cut(s) 397
Bse1I ACTGG 2 cut(s) 90, 361
BseGI GGATG 1 cut(s) 161
BseLI CCNNNNNNNGG 1 cut(s) 397
BseMII CTCAG 3 cut(s) 65, 76, 264
BseNI ACTGG 2 cut(s) 90, 361
BseXI GCAGC 1 cut(s) 279
BseYI CCCAGC 1 cut(s) 311
BsgI GTGCAG 1 cut(s) 351
BshFI GGCC 1 cut(s) 214
BslI CCNNNNNNNGG 1 cut(s) 397
BsmAI GTCTC 2 cut(s) 142, 427
BsmBI CGTCTC 1 cut(s) 427
BsmI GAATGC 1 cut(s) 283
BsnI GGCC 1 cut(s) 214
Bsp143I GATC 2 cut(s) 122, 447
BspACI CCGC 1 cut(s) 165
BspANI GGCC 1 cut(s) 214
BspCNI CTCAG 3 cut(s) 64, 75, 265
BspLI GGNNCC 1 cut(s) 373
BspMI ACCTGC 2 cut(s) 338, 425
BspPI GGATC 2 cut(s) 130, 442
BsrI ACTGG 2 cut(s) 90, 361
BssMI GATC 2 cut(s) 122, 447
BssNAI GTATAC 1 cut(s) 193
Bst1107I GTATAC 1 cut(s) 193
Bst4CI ACNGT 4 cut(s) 37, 221, 355, 474
Bst6I CTCTTC 2 cut(s) 125, 175
BstC8I GCNNGC 2 cut(s) 59, 319
BstDEI CTNAG 4 cut(s) 51, 62, 75, 273
BstF5I GGATG 1 cut(s) 161
BstKTI GATC 2 cut(s) 125, 450
BstMAI GTCTC 2 cut(s) 142, 427
BstMBI GATC 2 cut(s) 122, 447
BstMWI GCNNNNNNNGC 2 cut(s) 211, 278
BstNSI RCATGY 4 cut(s) 22, 61, 321, 330
BstV1I GCAGC 1 cut(s) 279
BstX2I RGATCY 1 cut(s) 122
BstXI CCANNNNNNTGG 1 cut(s) 368
BstYI RGATCY 1 cut(s) 122
BstZ17I GTATAC 1 cut(s) 193
BsuRI GGCC 1 cut(s) 214
BtsCI GGATG 1 cut(s) 161
BtsIMutI CAGTG 1 cut(s) 59
BveI ACCTGC 2 cut(s) 338, 425
Cac8I GCNNGC 2 cut(s) 59, 319
CaiI CAGNNNCTG 1 cut(s) 353
Cfr13I GGNCC 2 cut(s) 212, 358
CseI GACGC 1 cut(s) 409
Csp6I GTAC 2 cut(s) 351, 427
CviAII CATG 5 cut(s) 19, 28, 58, 318, 327
CviJI RGCY 6 cut(s) 153, 205, 214, 272, 292, 311
CviKI_1 RGCY 6 cut(s) 153, 205, 214, 272, 292, 311
CviQI GTAC 2 cut(s) 351, 427
DdeI CTNAG 4 cut(s) 51, 62, 75, 273
DpnI GATC 2 cut(s) 124, 449
DpnII GATC 2 cut(s) 122, 447
Eam1104I CTCTTC 2 cut(s) 125, 175
EarI CTCTTC 2 cut(s) 125, 175
EciI GGCGGA 1 cut(s) 154
Eco47I GGWCC 1 cut(s) 358
Eco57I CTGAAG 1 cut(s) 420
Esp3I CGTCTC 1 cut(s) 427
FaeI CATG 5 cut(s) 22, 31, 61, 321, 330
FaiI YATR 7 cut(s) 20, 29, 59, 193, 319, 328, 408
FatI CATG 5 cut(s) 18, 27, 57, 317, 326
FblI GTMKAC 1 cut(s) 192
Fnu4HI GCNGC 1 cut(s) 293
FokI GGATG 1 cut(s) 148
Fsp4HI GCNGC 1 cut(s) 293
GluI GCNGC 1 cut(s) 293
GsaI CCCAGC 1 cut(s) 315
GsuI CTGGAG 1 cut(s) 228
HaeIII GGCC 1 cut(s) 214
HgaI GACGC 1 cut(s) 409
Hin1II CATG 5 cut(s) 22, 31, 61, 321, 330
HincII GTYRAC 1 cut(s) 24
HindII GTYRAC 1 cut(s) 24
HinfI GANTC 4 cut(s) 5, 79, 251, 266
HphI GGTGA 2 cut(s) 79, 233
Hpy166II GTNNAC 5 cut(s) 24, 40, 193, 358, 470
Hpy188I TCNGA 3 cut(s) 65, 367, 439
Hpy188III TCNNGA 2 cut(s) 174, 245
Hpy8I GTNNAC 5 cut(s) 24, 40, 193, 358, 470
HpyAV CCTTC 3 cut(s) 385, 391, 395
HpyCH4III ACNGT 4 cut(s) 37, 221, 355, 474
HpyCH4IV ACGT 1 cut(s) 42
HpyCH4V TGCA 5 cut(s) 57, 71, 281, 306, 332
HpyF10VI GCNNNNNNNGC 2 cut(s) 211, 278
HpyF3I CTNAG 4 cut(s) 51, 62, 75, 273
HpySE526I ACGT 1 cut(s) 42
Hsp92II CATG 5 cut(s) 22, 31, 61, 321, 330
Kzo9I GATC 2 cut(s) 122, 447
LmnI GCTCC 2 cut(s) 247, 326
LpnPI CCDG 9 cut(s) 103, 228, 258, 267, 297, 318, 333, 374, 430
Lsp1109I GCAGC 1 cut(s) 279
LweI GCATC 2 cut(s) 170, 229
MaeII ACGT 1 cut(s) 42
MalI GATC 2 cut(s) 124, 449
MboI GATC 2 cut(s) 122, 447
MboII GAAGA 4 cut(s) 105, 142, 162, 426
MflI RGATCY 1 cut(s) 122
MluCI AATT 1 cut(s) 83
MlyI GAGTC 1 cut(s) 245
MnlI CCTC 3 cut(s) 58, 178, 217
MseI TTAA 2 cut(s) 102, 201
MspA1I CMGCKG 1 cut(s) 272
Mva1269I GAATGC 1 cut(s) 283
MwoI GCNNNNNNNGC 2 cut(s) 211, 278
NdeII GATC 2 cut(s) 122, 447
NlaIII CATG 5 cut(s) 22, 31, 61, 321, 330
NlaIV GGNNCC 1 cut(s) 373
NspI RCATGY 4 cut(s) 22, 61, 321, 330
PaeI GCATGC 2 cut(s) 61, 321
PciI ACATGT 2 cut(s) 18, 326
PctI GAATGC 1 cut(s) 283
PfeI GAWTC 3 cut(s) 5, 79, 266
PkrI GCNGC 1 cut(s) 294
PleI GAGTC 1 cut(s) 245
PpsI GAGTC 1 cut(s) 245
PscI ACATGT 2 cut(s) 18, 326
Psp1406I AACGTT 1 cut(s) 42
PspFI CCCAGC 1 cut(s) 311
PspN4I GGNNCC 1 cut(s) 373
PspPI GGNCC 2 cut(s) 212, 358
PstNI CAGNNNCTG 1 cut(s) 353
PsuI RGATCY 1 cut(s) 122
PvuII CAGCTG 1 cut(s) 272
RsaI GTAC 2 cut(s) 352, 428
RsaNI GTAC 2 cut(s) 351, 427
SaqAI TTAA 2 cut(s) 102, 201
SatI GCNGC 1 cut(s) 293
Sau3AI GATC 2 cut(s) 122, 447
Sau96I GGNCC 2 cut(s) 212, 358
SchI GAGTC 1 cut(s) 245
SfaNI GCATC 2 cut(s) 170, 229
SinI GGWCC 1 cut(s) 358
SphI GCATGC 2 cut(s) 61, 321
Sse9I AATT 1 cut(s) 83
SsiI CCGC 1 cut(s) 165
TaaI ACNGT 4 cut(s) 37, 221, 355, 474
TaiI ACGT 1 cut(s) 45
TasI AATT 1 cut(s) 83
TfiI GAWTC 3 cut(s) 5, 79, 266
Tru1I TTAA 2 cut(s) 102, 201
Tru9I TTAA 2 cut(s) 102, 201
TscAI CASTG 1 cut(s) 59
TseI GCWGC 1 cut(s) 292
TspDTI ATGAA 1 cut(s) 410
TspRI CASTG 1 cut(s) 59
VpaK11BI GGWCC 1 cut(s) 358
XceI RCATGY 4 cut(s) 22, 61, 321, 330
XmiI GTMKAC 1 cut(s) 192
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.