FvH4_2g09491

Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0003912
Physical Location & Seq
Reverse (-)
8420789 .. 8423151
2363 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g09491.t1

Sequence Viewer

Length: 462 bp
ATGTCAACCATGACAACTGTGAACGTTCCCTCTCAGTGCATGCTCAGAAATGCACCTAAGACTCGATTCACCAGTTCTATCATTAAGTTCTCATCTCAACTTGGATCTGTGAAGACTGTCTCCAAGTCTTTTGGCTTGAAAGCATCCGCCTCTTCCCAAACATCAATGGCAGTTTACAAGGTTAAGCTGATTGGGCCAGATGGTGAGGAGAACGAATTTGATGCTCCAGATGATGCTTACATCTTGGATTCAGCTGAGAATGCAGGAATTGAGCTGCCCTATTCTTGCAGGGCTGGGGCATGCTCCACCTGTGCAGGAAAGATGGTAGCAGGTACAGTGGACCAGTCTGATGGTTCCTTCCTTGATGACAACCAAACGAAGGAGGGTTATGTGCTGACCTGTGTTTCGTATCCATCCTCAGACTGTGTGATCCACACTCACAAGGAAAGTGATTTGTATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00195 map00195
Pfam Domains
Protein Families
Fer2

Protein Analysis

154

Amino Acids

16.34

Weight (kDa)

4.91

Isoelectric Point (pI)

45.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Fer2 PF00111 66 - 138 5.3e-23 2Fe-2S iron-sulfur cluster binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 320
AciI CCGC 1 cut(s) 147
AclI AACGTT 1 cut(s) 24
AclWI GGATC 2 cut(s) 112, 424
AcsI RAATTY 1 cut(s) 215
AfaI GTAC 1 cut(s) 334
AfiI CCNNNNNNNGG 1 cut(s) 379
AgsI TTSAA 1 cut(s) 139
AluBI AGCT 3 cut(s) 187, 254, 274
AluI AGCT 3 cut(s) 187, 254, 274
Alw26I GTCTC 1 cut(s) 124
AlwI GGATC 2 cut(s) 112, 424
AoxI GGCC 1 cut(s) 194
ApeKI GCWGC 1 cut(s) 274
ApoI RAATTY 1 cut(s) 215
ArsI GACNNNNNNTTYG 2 cut(s) 388, 420
AspS9I GGNCC 2 cut(s) 194, 340
AsuHPI GGTGA 2 cut(s) 61, 215
AvaII GGWCC 1 cut(s) 340
BbsI GAAGAC 1 cut(s) 119
BbvI GCAGC 1 cut(s) 261
BccI CCATC 4 cut(s) 194, 316, 344, 421
BcgI CGANNNNNNTGC 2 cut(s) 203, 237
BciVI GTATCC 1 cut(s) 420
BcoDI GTCTC 1 cut(s) 124
BfuAI ACCTGC 1 cut(s) 320
BfuI GTATCC 1 cut(s) 420
BisI GCNGC 1 cut(s) 275
BlsI GCNGC 1 cut(s) 276
Bme18I GGWCC 1 cut(s) 340
BmgT120I GGNCC 2 cut(s) 194, 340
BmiI GGNNCC 1 cut(s) 355
BmsI GCATC 3 cut(s) 152, 211, 223
BpiI GAAGAC 1 cut(s) 119
BpmI CTGGAG 1 cut(s) 210
Bsc4I CCNNNNNNNGG 1 cut(s) 379
Bse1I ACTGG 2 cut(s) 72, 343
BseGI GGATG 2 cut(s) 143, 413
BseLI CCNNNNNNNGG 1 cut(s) 379
BseMII CTCAG 4 cut(s) 47, 58, 246, 432
BseNI ACTGG 2 cut(s) 72, 343
BseRI GAGGAG 1 cut(s) 221
BseXI GCAGC 1 cut(s) 261
BseYI CCCAGC 1 cut(s) 293
BsgI GTGCAG 1 cut(s) 333
BshFI GGCC 1 cut(s) 196
BslI CCNNNNNNNGG 1 cut(s) 379
BsmAI GTCTC 1 cut(s) 124
BsmI GAATGC 1 cut(s) 265
BsnI GGCC 1 cut(s) 196
Bsp143I GATC 2 cut(s) 104, 429
BspACI CCGC 1 cut(s) 147
BspANI GGCC 1 cut(s) 196
BspCNI CTCAG 4 cut(s) 46, 57, 247, 431
BspLI GGNNCC 1 cut(s) 355
BspMI ACCTGC 1 cut(s) 320
BspPI GGATC 2 cut(s) 112, 424
BsrI ACTGG 2 cut(s) 72, 343
BssMI GATC 2 cut(s) 104, 429
Bst4CI ACNGT 4 cut(s) 19, 118, 337, 425
Bst6I CTCTTC 1 cut(s) 157
BstC8I GCNNGC 2 cut(s) 41, 301
BstDEI CTNAG 5 cut(s) 33, 44, 57, 255, 418
BstF5I GGATG 2 cut(s) 143, 413
BstKTI GATC 2 cut(s) 107, 432
BstMAI GTCTC 1 cut(s) 124
BstMBI GATC 2 cut(s) 104, 429
BstMWI GCNNNNNNNGC 2 cut(s) 193, 260
BstNSI RCATGY 2 cut(s) 43, 303
BstV1I GCAGC 1 cut(s) 261
BstV2I GAAGAC 1 cut(s) 119
BstX2I RGATCY 1 cut(s) 104
BstXI CCANNNNNNTGG 1 cut(s) 350
BstYI RGATCY 1 cut(s) 104
BsuI GTATCC 1 cut(s) 420
BsuRI GGCC 1 cut(s) 196
BtsCI GGATG 2 cut(s) 143, 413
BtsIMutI CAGTG 2 cut(s) 41, 342
BveI ACCTGC 1 cut(s) 320
Cac8I GCNNGC 2 cut(s) 41, 301
Cfr13I GGNCC 2 cut(s) 194, 340
Csp6I GTAC 1 cut(s) 333
CviAII CATG 3 cut(s) 10, 40, 300
CviJI RGCY 6 cut(s) 135, 187, 196, 254, 274, 293
CviKI_1 RGCY 6 cut(s) 135, 187, 196, 254, 274, 293
CviQI GTAC 1 cut(s) 333
DdeI CTNAG 5 cut(s) 33, 44, 57, 255, 418
DpnI GATC 2 cut(s) 106, 431
DpnII GATC 2 cut(s) 104, 429
Eam1104I CTCTTC 1 cut(s) 157
EarI CTCTTC 1 cut(s) 157
EciI GGCGGA 1 cut(s) 136
Eco47I GGWCC 1 cut(s) 340
FaeI CATG 3 cut(s) 13, 43, 303
FaiI YATR 4 cut(s) 11, 41, 301, 390
FatI CATG 3 cut(s) 9, 39, 299
Fnu4HI GCNGC 1 cut(s) 275
FokI GGATG 2 cut(s) 130, 400
Fsp4HI GCNGC 1 cut(s) 275
GluI GCNGC 1 cut(s) 275
GsaI CCCAGC 1 cut(s) 297
GsuI CTGGAG 1 cut(s) 210
HaeIII GGCC 1 cut(s) 196
Hin1II CATG 3 cut(s) 13, 43, 303
HincII GTYRAC 1 cut(s) 6
HindII GTYRAC 1 cut(s) 6
HinfI GANTC 3 cut(s) 61, 66, 248
HphI GGTGA 2 cut(s) 61, 215
Hpy166II GTNNAC 4 cut(s) 6, 22, 175, 340
Hpy188I TCNGA 3 cut(s) 47, 349, 421
Hpy188III TCNNGA 1 cut(s) 227
Hpy8I GTNNAC 4 cut(s) 6, 22, 175, 340
HpyAV CCTTC 2 cut(s) 367, 373
HpyCH4III ACNGT 4 cut(s) 19, 118, 337, 425
HpyCH4IV ACGT 1 cut(s) 24
HpyCH4V TGCA 5 cut(s) 39, 53, 263, 288, 314
HpyF10VI GCNNNNNNNGC 2 cut(s) 193, 260
HpyF3I CTNAG 5 cut(s) 33, 44, 57, 255, 418
HpySE526I ACGT 1 cut(s) 24
Hsp92II CATG 3 cut(s) 13, 43, 303
Kzo9I GATC 2 cut(s) 104, 429
LmnI GCTCC 2 cut(s) 229, 308
Lsp1109I GCAGC 1 cut(s) 261
LweI GCATC 3 cut(s) 152, 211, 223
MaeII ACGT 1 cut(s) 24
MalI GATC 2 cut(s) 106, 431
MboI GATC 2 cut(s) 104, 429
MboII GAAGA 2 cut(s) 124, 144
MflI RGATCY 1 cut(s) 104
MluCI AATT 2 cut(s) 215, 267
MlyI GAGTC 1 cut(s) 55
MnlI CCTC 5 cut(s) 40, 160, 199, 376, 427
MseI TTAA 2 cut(s) 84, 183
MspA1I CMGCKG 1 cut(s) 254
Mva1269I GAATGC 1 cut(s) 265
MwoI GCNNNNNNNGC 2 cut(s) 193, 260
NdeII GATC 2 cut(s) 104, 429
NlaIII CATG 3 cut(s) 13, 43, 303
NlaIV GGNNCC 1 cut(s) 355
NspI RCATGY 2 cut(s) 43, 303
PaeI GCATGC 2 cut(s) 43, 303
PctI GAATGC 1 cut(s) 265
PfeI GAWTC 2 cut(s) 66, 248
PkrI GCNGC 1 cut(s) 276
PleI GAGTC 1 cut(s) 55
PpsI GAGTC 1 cut(s) 55
Psp1406I AACGTT 1 cut(s) 24
PspFI CCCAGC 1 cut(s) 293
PspN4I GGNNCC 1 cut(s) 355
PspPI GGNCC 2 cut(s) 194, 340
PsuI RGATCY 1 cut(s) 104
PvuII CAGCTG 1 cut(s) 254
RsaI GTAC 1 cut(s) 334
RsaNI GTAC 1 cut(s) 333
SaqAI TTAA 2 cut(s) 84, 183
SatI GCNGC 1 cut(s) 275
Sau3AI GATC 2 cut(s) 104, 429
Sau96I GGNCC 2 cut(s) 194, 340
SchI GAGTC 1 cut(s) 55
SetI ASST 9 cut(s) 27, 58, 183, 189, 256, 276, 311, 334, 401
SfaNI GCATC 3 cut(s) 152, 211, 223
SinI GGWCC 1 cut(s) 340
SphI GCATGC 2 cut(s) 43, 303
Sse9I AATT 2 cut(s) 215, 267
SsiI CCGC 1 cut(s) 147
TaaI ACNGT 4 cut(s) 19, 118, 337, 425
TaiI ACGT 1 cut(s) 27
TaqI TCGA 1 cut(s) 64
TasI AATT 2 cut(s) 215, 267
TfiI GAWTC 2 cut(s) 66, 248
Tru1I TTAA 2 cut(s) 84, 183
Tru9I TTAA 2 cut(s) 84, 183
TscAI CASTG 2 cut(s) 41, 342
TseI GCWGC 1 cut(s) 274
TspRI CASTG 2 cut(s) 41, 342
VpaK11BI GGWCC 1 cut(s) 340
XapI RAATTY 1 cut(s) 215
XceI RCATGY 2 cut(s) 43, 303
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.