FvH4_3g24910

Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0003912
Physical Location & Seq
Forward (+)
17973228 .. 17975754
2527 bp
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UTR
Exon/CDS
Intron
FvH4_3g24910.t2

Sequence Viewer

Length: 462 bp
ATGTCAACTATGACGACTGTGAATGTTCCTTCTCGGTGCATGCTCAGAAATGCACCCAAGACTCGATTCACCAGTTCTATCATCAAGTTCTCATCTCCGCTTGGATCTGTGAAGACTCTCTCCAAGTCCTTTGGCTTGAAAGCATCCGCCTCTTCCCGAACATCAATGGCAGCATACAAGGTTAAGCTGATTGGGCCAGACGGGGAGGAGAACGAGTTTGACGCTCCAGATGACTCTTACATCTTGGATTCAGCTGAGAATGCAGGAGTTGAGCTGCCCTATTCTTGCAGGGCTGGGGCATGCTCCACCTGTGCAGGAAAGATGGTAGCAGGTTCTGTTGACCAGTCTGATGGTTCCTTCCTTGATGACAACCAAATGAAGGAGGGTTATTTGCTGACCTGTGTCTCATACCCATCTTCAGACTGTGTGATCCACACTCACAAGGAAAGTGAACTGTATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00195 map00195
Pfam Domains
Protein Families
Fer2

Protein Analysis

154

Amino Acids

16.39

Weight (kDa)

5.35

Isoelectric Point (pI)

49.3

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Fer2 PF00111 66 - 138 9.4e-23 2Fe-2S iron-sulfur cluster binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 320
AciI CCGC 2 cut(s) 98, 147
AclWI GGATC 2 cut(s) 112, 424
AcuI CTGAAG 1 cut(s) 402
AfiI CCNNNNNNNGG 1 cut(s) 379
AgsI TTSAA 1 cut(s) 139
AjuI GAANNNNNNNTTGG 2 cut(s) 50, 82
AluBI AGCT 3 cut(s) 187, 254, 274
AluI AGCT 3 cut(s) 187, 254, 274
Alw26I GTCTC 1 cut(s) 409
AlwI GGATC 2 cut(s) 112, 424
AlwNI CAGNNNCTG 1 cut(s) 335
AoxI GGCC 1 cut(s) 194
ApeKI GCWGC 2 cut(s) 170, 274
AspS9I GGNCC 1 cut(s) 194
AsuHPI GGTGA 1 cut(s) 61
BbsI GAAGAC 1 cut(s) 119
BbvI GCAGC 2 cut(s) 182, 261
BccI CCATC 3 cut(s) 316, 344, 421
BcoDI GTCTC 1 cut(s) 409
BfuAI ACCTGC 1 cut(s) 320
BisI GCNGC 2 cut(s) 171, 275
BlsI GCNGC 2 cut(s) 172, 276
BmgT120I GGNCC 1 cut(s) 194
BmiI GGNNCC 1 cut(s) 355
BmsI GCATC 1 cut(s) 152
BoxI GACNNNNGTC 1 cut(s) 401
BpiI GAAGAC 1 cut(s) 119
BpmI CTGGAG 1 cut(s) 210
BsaXI ACNNNNNCTCC 2 cut(s) 200, 230
Bsc4I CCNNNNNNNGG 1 cut(s) 379
Bse1I ACTGG 2 cut(s) 72, 343
BseGI GGATG 1 cut(s) 143
BseLI CCNNNNNNNGG 1 cut(s) 379
BseMII CTCAG 2 cut(s) 58, 246
BseNI ACTGG 2 cut(s) 72, 343
BseRI GAGGAG 1 cut(s) 221
BseXI GCAGC 2 cut(s) 182, 261
BseYI CCCAGC 1 cut(s) 293
BsgI GTGCAG 1 cut(s) 333
BshFI GGCC 1 cut(s) 196
BslI CCNNNNNNNGG 1 cut(s) 379
BsmAI GTCTC 1 cut(s) 409
BsmI GAATGC 1 cut(s) 265
BsnI GGCC 1 cut(s) 196
Bsp143I GATC 2 cut(s) 104, 429
BspACI CCGC 2 cut(s) 98, 147
BspANI GGCC 1 cut(s) 196
BspCNI CTCAG 2 cut(s) 57, 247
BspLI GGNNCC 1 cut(s) 355
BspMI ACCTGC 1 cut(s) 320
BspPI GGATC 2 cut(s) 112, 424
BsrI ACTGG 2 cut(s) 72, 343
BssMI GATC 2 cut(s) 104, 429
Bst4CI ACNGT 3 cut(s) 19, 425, 456
Bst6I CTCTTC 1 cut(s) 157
BstC8I GCNNGC 2 cut(s) 41, 301
BstDEI CTNAG 2 cut(s) 44, 255
BstF5I GGATG 1 cut(s) 143
BstKTI GATC 2 cut(s) 107, 432
BstMAI GTCTC 1 cut(s) 409
BstMBI GATC 2 cut(s) 104, 429
BstMWI GCNNNNNNNGC 2 cut(s) 193, 260
BstNSI RCATGY 2 cut(s) 43, 303
BstPAI GACNNNNGTC 1 cut(s) 401
BstV1I GCAGC 2 cut(s) 182, 261
BstV2I GAAGAC 1 cut(s) 119
BstX2I RGATCY 1 cut(s) 104
BstXI CCANNNNNNTGG 1 cut(s) 350
BstYI RGATCY 1 cut(s) 104
BsuRI GGCC 1 cut(s) 196
BtsCI GGATG 1 cut(s) 143
BveI ACCTGC 1 cut(s) 320
Cac8I GCNNGC 2 cut(s) 41, 301
CaiI CAGNNNCTG 1 cut(s) 335
Cfr13I GGNCC 1 cut(s) 194
CseI GACGC 1 cut(s) 230
CviAII CATG 2 cut(s) 40, 300
CviJI RGCY 6 cut(s) 135, 187, 196, 254, 274, 293
CviKI_1 RGCY 6 cut(s) 135, 187, 196, 254, 274, 293
DdeI CTNAG 2 cut(s) 44, 255
DpnI GATC 2 cut(s) 106, 431
DpnII GATC 2 cut(s) 104, 429
Eam1104I CTCTTC 1 cut(s) 157
EarI CTCTTC 1 cut(s) 157
EciI GGCGGA 1 cut(s) 136
Eco57I CTGAAG 1 cut(s) 402
FaeI CATG 2 cut(s) 43, 303
FaiI YATR 5 cut(s) 11, 41, 175, 301, 409
FatI CATG 2 cut(s) 39, 299
Fnu4HI GCNGC 2 cut(s) 171, 275
FokI GGATG 1 cut(s) 130
Fsp4HI GCNGC 2 cut(s) 171, 275
GluI GCNGC 2 cut(s) 171, 275
GsaI CCCAGC 1 cut(s) 297
GsuI CTGGAG 1 cut(s) 210
HaeIII GGCC 1 cut(s) 196
HgaI GACGC 1 cut(s) 230
Hin1II CATG 2 cut(s) 43, 303
HincII GTYRAC 2 cut(s) 6, 340
HindII GTYRAC 2 cut(s) 6, 340
HinfI GANTC 5 cut(s) 61, 66, 115, 233, 248
HphI GGTGA 1 cut(s) 61
Hpy166II GTNNAC 3 cut(s) 6, 340, 452
Hpy188I TCNGA 3 cut(s) 47, 349, 421
Hpy188III TCNNGA 2 cut(s) 156, 227
Hpy8I GTNNAC 3 cut(s) 6, 340, 452
HpyAV CCTTC 3 cut(s) 39, 367, 373
HpyCH4III ACNGT 3 cut(s) 19, 425, 456
HpyCH4V TGCA 5 cut(s) 39, 53, 263, 288, 314
HpyF10VI GCNNNNNNNGC 2 cut(s) 193, 260
HpyF3I CTNAG 2 cut(s) 44, 255
Hsp92II CATG 2 cut(s) 43, 303
Kzo9I GATC 2 cut(s) 104, 429
LmnI GCTCC 2 cut(s) 229, 308
Lsp1109I GCAGC 2 cut(s) 182, 261
LweI GCATC 1 cut(s) 152
MalI GATC 2 cut(s) 106, 431
MboI GATC 2 cut(s) 104, 429
MboII GAAGA 3 cut(s) 124, 144, 408
MflI RGATCY 1 cut(s) 104
MlyI GAGTC 3 cut(s) 55, 109, 227
MnlI CCTC 3 cut(s) 160, 199, 376
MseI TTAA 1 cut(s) 183
MspA1I CMGCKG 1 cut(s) 254
Mva1269I GAATGC 1 cut(s) 265
MwoI GCNNNNNNNGC 2 cut(s) 193, 260
NdeII GATC 2 cut(s) 104, 429
NlaIII CATG 2 cut(s) 43, 303
NlaIV GGNNCC 1 cut(s) 355
NspI RCATGY 2 cut(s) 43, 303
PaeI GCATGC 2 cut(s) 43, 303
PctI GAATGC 1 cut(s) 265
PfeI GAWTC 2 cut(s) 66, 248
PkrI GCNGC 2 cut(s) 172, 276
PleI GAGTC 3 cut(s) 55, 109, 227
PpsI GAGTC 3 cut(s) 55, 109, 227
PshAI GACNNNNGTC 1 cut(s) 401
PspFI CCCAGC 1 cut(s) 293
PspN4I GGNNCC 1 cut(s) 355
PspPI GGNCC 1 cut(s) 194
PstNI CAGNNNCTG 1 cut(s) 335
PsuI RGATCY 1 cut(s) 104
PvuII CAGCTG 1 cut(s) 254
SaqAI TTAA 1 cut(s) 183
SatI GCNGC 2 cut(s) 171, 275
Sau3AI GATC 2 cut(s) 104, 429
Sau96I GGNCC 1 cut(s) 194
SchI GAGTC 3 cut(s) 55, 109, 227
SetI ASST 7 cut(s) 183, 189, 256, 276, 311, 334, 401
SfaNI GCATC 1 cut(s) 152
SphI GCATGC 2 cut(s) 43, 303
SsiI CCGC 2 cut(s) 98, 147
TaaI ACNGT 3 cut(s) 19, 425, 456
TaqI TCGA 1 cut(s) 64
TfiI GAWTC 2 cut(s) 66, 248
Tru1I TTAA 1 cut(s) 183
Tru9I TTAA 1 cut(s) 183
TseI GCWGC 2 cut(s) 170, 274
TspDTI ATGAA 1 cut(s) 392
XceI RCATGY 2 cut(s) 43, 303
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.