Rw6G012240

Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
OG0003912
Physical Location & Seq
Reverse (-)
22270800 .. 22273614
2815 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G012240.1

Sequence Viewer

Length: 462 bp
ATGTCAACCATGACAACTGTGAACGTTCCCTCTCAGTGCATGCTCAGAAATGCACCTAAGACTGGATTCACCAGTTCTATCATCAAGTTCTCATCTCCACTTGGATCTGTGAAGACTCTCTCCAAGTCTTTTGGCTTGAAAGCATCTGCCTCTACCCGAACATCAATGGCAGTATACAAGGTTAAGCTGATTGGGCCAGACGGTGAGGAGAACGAGTTTGACGCTCCAGATGACTCTTACATCTTGGATTCAGCTGAGAACGCAGGAGTTGAGCTGCCCTATTCTTGCAGGGCTGGGGCATGCTCCACCTGTGCAGGAAAGATGGTAGCAGGTGCAGTGGACCAGTCAGATGGTTCCTTCCTTGATGACAACCAAATGAAGGAGGGTTATGTGCTGACCTGTGTCTCGTATCCAACTTCAGACTGTGTGATCCATACTCACAAGGAAAGTGAACTGTATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00195 map00195
Pfam Domains
Protein Families
Fer2

Protein Analysis

153

Amino Acids

16.29

Weight (kDa)

4.93

Isoelectric Point (pI)

42.17

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Fer2 PF00111 66 - 139 4.3e-23 2Fe-2S iron-sulfur cluster binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 320
Acc36I ACCTGC 1 cut(s) 320
AccI GTMKAC 1 cut(s) 174
AclI AACGTT 1 cut(s) 24
AclWI GGATC 2 cut(s) 112, 424
AcuI CTGAAG 1 cut(s) 402
AfiI CCNNNNNNNGG 2 cut(s) 62, 379
AgsI TTSAA 1 cut(s) 139
AluBI AGCT 3 cut(s) 187, 254, 274
AluI AGCT 3 cut(s) 187, 254, 274
Alw26I GTCTC 1 cut(s) 409
AlwI GGATC 2 cut(s) 112, 424
AoxI GGCC 1 cut(s) 194
ApeKI GCWGC 1 cut(s) 274
AspS9I GGNCC 2 cut(s) 194, 340
AsuHPI GGTGA 2 cut(s) 61, 215
AvaII GGWCC 1 cut(s) 340
BbsI GAAGAC 1 cut(s) 119
BbvI GCAGC 1 cut(s) 261
BccI CCATC 2 cut(s) 316, 344
BciVI GTATCC 1 cut(s) 420
BcoDI GTCTC 1 cut(s) 409
BfuAI ACCTGC 1 cut(s) 320
BfuI GTATCC 1 cut(s) 420
BisI GCNGC 1 cut(s) 275
BlsI GCNGC 1 cut(s) 276
Bme18I GGWCC 1 cut(s) 340
BmgT120I GGNCC 2 cut(s) 194, 340
BmiI GGNNCC 1 cut(s) 355
BmsI GCATC 1 cut(s) 152
BoxI GACNNNNGTC 1 cut(s) 401
BpiI GAAGAC 1 cut(s) 119
BpmI CTGGAG 1 cut(s) 210
BsaXI ACNNNNNCTCC 2 cut(s) 200, 230
Bsc4I CCNNNNNNNGG 2 cut(s) 62, 379
Bse1I ACTGG 3 cut(s) 67, 72, 343
BseLI CCNNNNNNNGG 2 cut(s) 62, 379
BseMII CTCAG 3 cut(s) 47, 58, 246
BseNI ACTGG 3 cut(s) 67, 72, 343
BseRI GAGGAG 1 cut(s) 221
BseXI GCAGC 1 cut(s) 261
BseYI CCCAGC 1 cut(s) 293
BsgI GTGCAG 2 cut(s) 333, 354
BshFI GGCC 1 cut(s) 196
BslI CCNNNNNNNGG 2 cut(s) 62, 379
BsmAI GTCTC 1 cut(s) 409
BsnI GGCC 1 cut(s) 196
Bsp143I GATC 2 cut(s) 104, 429
BspANI GGCC 1 cut(s) 196
BspCNI CTCAG 3 cut(s) 46, 57, 247
BspLI GGNNCC 1 cut(s) 355
BspMI ACCTGC 1 cut(s) 320
BspPI GGATC 2 cut(s) 112, 424
BsrI ACTGG 3 cut(s) 67, 72, 343
BssMI GATC 2 cut(s) 104, 429
BssNAI GTATAC 1 cut(s) 175
Bst1107I GTATAC 1 cut(s) 175
Bst4CI ACNGT 4 cut(s) 19, 203, 425, 456
BstC8I GCNNGC 2 cut(s) 41, 301
BstDEI CTNAG 4 cut(s) 33, 44, 57, 255
BstKTI GATC 2 cut(s) 107, 432
BstMAI GTCTC 1 cut(s) 409
BstMBI GATC 2 cut(s) 104, 429
BstMWI GCNNNNNNNGC 2 cut(s) 193, 260
BstNSI RCATGY 2 cut(s) 43, 303
BstPAI GACNNNNGTC 1 cut(s) 401
BstV1I GCAGC 1 cut(s) 261
BstV2I GAAGAC 1 cut(s) 119
BstX2I RGATCY 1 cut(s) 104
BstXI CCANNNNNNTGG 1 cut(s) 350
BstYI RGATCY 1 cut(s) 104
BstZ17I GTATAC 1 cut(s) 175
BsuI GTATCC 1 cut(s) 420
BsuRI GGCC 1 cut(s) 196
BtsI GCAGTG 1 cut(s) 342
BtsIMutI CAGTG 2 cut(s) 41, 342
BveI ACCTGC 1 cut(s) 320
Cac8I GCNNGC 2 cut(s) 41, 301
Cfr13I GGNCC 2 cut(s) 194, 340
CseI GACGC 1 cut(s) 230
CviAII CATG 3 cut(s) 10, 40, 300
CviJI RGCY 6 cut(s) 135, 187, 196, 254, 274, 293
CviKI_1 RGCY 6 cut(s) 135, 187, 196, 254, 274, 293
DdeI CTNAG 4 cut(s) 33, 44, 57, 255
DpnI GATC 2 cut(s) 106, 431
DpnII GATC 2 cut(s) 104, 429
Eco47I GGWCC 1 cut(s) 340
Eco57I CTGAAG 1 cut(s) 402
FaeI CATG 3 cut(s) 13, 43, 303
FaiI YATR 6 cut(s) 11, 41, 175, 301, 390, 435
FatI CATG 3 cut(s) 9, 39, 299
FblI GTMKAC 1 cut(s) 174
Fnu4HI GCNGC 1 cut(s) 275
Fsp4HI GCNGC 1 cut(s) 275
GluI GCNGC 1 cut(s) 275
GsaI CCCAGC 1 cut(s) 297
GsuI CTGGAG 1 cut(s) 210
HaeIII GGCC 1 cut(s) 196
HgaI GACGC 1 cut(s) 230
Hin1II CATG 3 cut(s) 13, 43, 303
HincII GTYRAC 1 cut(s) 6
HindII GTYRAC 1 cut(s) 6
HinfI GANTC 4 cut(s) 66, 115, 233, 248
HphI GGTGA 2 cut(s) 61, 215
Hpy166II GTNNAC 5 cut(s) 6, 22, 175, 340, 452
Hpy188I TCNGA 3 cut(s) 47, 349, 421
Hpy188III TCNNGA 1 cut(s) 227
Hpy8I GTNNAC 5 cut(s) 6, 22, 175, 340, 452
HpyAV CCTTC 2 cut(s) 367, 373
HpyCH4III ACNGT 4 cut(s) 19, 203, 425, 456
HpyCH4IV ACGT 1 cut(s) 24
HpyCH4V TGCA 5 cut(s) 39, 53, 288, 314, 335
HpyF10VI GCNNNNNNNGC 2 cut(s) 193, 260
HpyF3I CTNAG 4 cut(s) 33, 44, 57, 255
HpySE526I ACGT 1 cut(s) 24
Hsp92II CATG 3 cut(s) 13, 43, 303
Kzo9I GATC 2 cut(s) 104, 429
LmnI GCTCC 2 cut(s) 229, 308
Lsp1109I GCAGC 1 cut(s) 261
LweI GCATC 1 cut(s) 152
MaeII ACGT 1 cut(s) 24
MalI GATC 2 cut(s) 106, 431
MboI GATC 2 cut(s) 104, 429
MboII GAAGA 1 cut(s) 124
MflI RGATCY 1 cut(s) 104
MlyI GAGTC 2 cut(s) 109, 227
MmeI TCCRAC 1 cut(s) 437
MnlI CCTC 4 cut(s) 40, 160, 199, 376
MseI TTAA 1 cut(s) 183
MspA1I CMGCKG 1 cut(s) 254
MwoI GCNNNNNNNGC 2 cut(s) 193, 260
NdeII GATC 2 cut(s) 104, 429
NlaIII CATG 3 cut(s) 13, 43, 303
NlaIV GGNNCC 1 cut(s) 355
NspI RCATGY 2 cut(s) 43, 303
PaeI GCATGC 2 cut(s) 43, 303
PaqCI CACCTGC 1 cut(s) 320
PfeI GAWTC 2 cut(s) 66, 248
PkrI GCNGC 1 cut(s) 276
PleI GAGTC 2 cut(s) 109, 227
PpsI GAGTC 2 cut(s) 109, 227
PshAI GACNNNNGTC 1 cut(s) 401
Psp1406I AACGTT 1 cut(s) 24
PspFI CCCAGC 1 cut(s) 293
PspN4I GGNNCC 1 cut(s) 355
PspPI GGNCC 2 cut(s) 194, 340
PsuI RGATCY 1 cut(s) 104
PvuII CAGCTG 1 cut(s) 254
SaqAI TTAA 1 cut(s) 183
SatI GCNGC 1 cut(s) 275
Sau3AI GATC 2 cut(s) 104, 429
Sau96I GGNCC 2 cut(s) 194, 340
SchI GAGTC 2 cut(s) 109, 227
SetI ASST 9 cut(s) 27, 58, 183, 189, 256, 276, 311, 334, 401
SfaNI GCATC 1 cut(s) 152
SinI GGWCC 1 cut(s) 340
SphI GCATGC 2 cut(s) 43, 303
TaaI ACNGT 4 cut(s) 19, 203, 425, 456
TaiI ACGT 1 cut(s) 27
TfiI GAWTC 2 cut(s) 66, 248
Tru1I TTAA 1 cut(s) 183
Tru9I TTAA 1 cut(s) 183
TscAI CASTG 2 cut(s) 41, 342
TseI GCWGC 1 cut(s) 274
TspDTI ATGAA 1 cut(s) 392
TspRI CASTG 2 cut(s) 41, 342
VpaK11BI GGWCC 1 cut(s) 340
XceI RCATGY 2 cut(s) 43, 303
XmiI GTMKAC 1 cut(s) 174
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.