RchiOBHm_Chr5g0044701

Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0003912
Physical Location & Seq
Forward (+)
40121102 .. 40124062
2961 bp
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UTR
Exon/CDS
Intron
PRQ32287

Sequence Viewer

Length: 462 bp
ATGTCAACCATGACAACTGTGAATGTTCCCTCTCAGTGCATGCTCAGAAATGCACCTAAGATGCAATTCAACAGTTCTATCATTAAGTTCTCATCTTCACTTGGATCTGTGAAGAGTGTCTCCAAGTCTTTTGGCTTGAAAGCATCCACCTCTTCCCGAACATCAATGGCAGTATACAAGATTAAGCTGATTGGGCCAGACGGTGAGGAAAACGAGTTTGATGCTCCAGATGACTCTTACATCTTGGATTCAGCTGAGAATGCAGGAGTTGAGCTGCCTTATTCTTGCAGAGCTGGGGCATGCTCCACATGTGCAGGAAAGATGGTAGCAGGTACTGTGGACCAGTCTGATGGTTCCTTCCTTGATGATAACCAAATGAAGGAAGGTTATGTGCTAACCTGCGTCTCGTACCCATCTTCAGACTGCGTGATCCACACTCACAAGGAAAGTGAACTGTATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00195 map00195
Pfam Domains
Protein Families
Fer2

Protein Analysis

153

Amino Acids

16.41

Weight (kDa)

4.93

Isoelectric Point (pI)

46.93

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Fer2 PF00111 66 - 138 4.2e-23 2Fe-2S iron-sulfur cluster binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 320, 407
AccI GTMKAC 1 cut(s) 174
AclWI GGATC 2 cut(s) 112, 424
AcuI CTGAAG 1 cut(s) 402
AfaI GTAC 2 cut(s) 334, 410
AfiI CCNNNNNNNGG 1 cut(s) 379
AflIII ACRYGT 1 cut(s) 308
AgsI TTSAA 2 cut(s) 70, 139
AluBI AGCT 4 cut(s) 187, 254, 274, 293
AluI AGCT 4 cut(s) 187, 254, 274, 293
Alw26I GTCTC 2 cut(s) 124, 409
AlwI GGATC 2 cut(s) 112, 424
AlwNI CAGNNNCTG 1 cut(s) 335
AoxI GGCC 1 cut(s) 194
ApeKI GCWGC 1 cut(s) 274
AspS9I GGNCC 2 cut(s) 194, 340
AsuHPI GGTGA 1 cut(s) 215
AvaII GGWCC 1 cut(s) 340
BbvI GCAGC 1 cut(s) 261
BccI CCATC 3 cut(s) 316, 344, 421
BcgI CGANNNNNNTGC 2 cut(s) 203, 237
BcoDI GTCTC 2 cut(s) 124, 409
BfuAI ACCTGC 2 cut(s) 320, 407
BisI GCNGC 1 cut(s) 275
BlsI GCNGC 1 cut(s) 276
Bme18I GGWCC 1 cut(s) 340
BmgT120I GGNCC 2 cut(s) 194, 340
BmiI GGNNCC 1 cut(s) 355
BmsI GCATC 3 cut(s) 51, 152, 211
BpmI CTGGAG 1 cut(s) 210
Bsc4I CCNNNNNNNGG 1 cut(s) 379
Bse1I ACTGG 1 cut(s) 343
BseGI GGATG 1 cut(s) 143
BseLI CCNNNNNNNGG 1 cut(s) 379
BseMII CTCAG 3 cut(s) 47, 58, 246
BseNI ACTGG 1 cut(s) 343
BseXI GCAGC 1 cut(s) 261
BseYI CCCAGC 1 cut(s) 293
BsgI GTGCAG 1 cut(s) 333
BshFI GGCC 1 cut(s) 196
BslI CCNNNNNNNGG 1 cut(s) 379
BsmAI GTCTC 2 cut(s) 124, 409
BsmBI CGTCTC 1 cut(s) 409
BsmI GAATGC 1 cut(s) 265
BsnI GGCC 1 cut(s) 196
Bsp143I GATC 2 cut(s) 104, 429
BspANI GGCC 1 cut(s) 196
BspCNI CTCAG 3 cut(s) 46, 57, 247
BspLI GGNNCC 1 cut(s) 355
BspMI ACCTGC 2 cut(s) 320, 407
BspPI GGATC 2 cut(s) 112, 424
BsrI ACTGG 1 cut(s) 343
BssMI GATC 2 cut(s) 104, 429
BssNAI GTATAC 1 cut(s) 175
Bst1107I GTATAC 1 cut(s) 175
Bst4CI ACNGT 5 cut(s) 19, 74, 203, 337, 456
Bst6I CTCTTC 2 cut(s) 107, 157
BstC8I GCNNGC 2 cut(s) 41, 301
BstDEI CTNAG 4 cut(s) 33, 44, 57, 255
BstF5I GGATG 1 cut(s) 143
BstKTI GATC 2 cut(s) 107, 432
BstMAI GTCTC 2 cut(s) 124, 409
BstMBI GATC 2 cut(s) 104, 429
BstMWI GCNNNNNNNGC 2 cut(s) 193, 260
BstNSI RCATGY 3 cut(s) 43, 303, 312
BstV1I GCAGC 1 cut(s) 261
BstX2I RGATCY 1 cut(s) 104
BstXI CCANNNNNNTGG 1 cut(s) 350
BstYI RGATCY 1 cut(s) 104
BstZ17I GTATAC 1 cut(s) 175
BsuRI GGCC 1 cut(s) 196
BtsCI GGATG 1 cut(s) 143
BtsIMutI CAGTG 1 cut(s) 41
BveI ACCTGC 2 cut(s) 320, 407
Cac8I GCNNGC 2 cut(s) 41, 301
CaiI CAGNNNCTG 1 cut(s) 335
Cfr13I GGNCC 2 cut(s) 194, 340
CseI GACGC 1 cut(s) 391
Csp6I GTAC 2 cut(s) 333, 409
CviAII CATG 4 cut(s) 10, 40, 300, 309
CviJI RGCY 6 cut(s) 135, 187, 196, 254, 274, 293
CviKI_1 RGCY 6 cut(s) 135, 187, 196, 254, 274, 293
CviQI GTAC 2 cut(s) 333, 409
DdeI CTNAG 4 cut(s) 33, 44, 57, 255
DpnI GATC 2 cut(s) 106, 431
DpnII GATC 2 cut(s) 104, 429
Eam1104I CTCTTC 2 cut(s) 107, 157
EarI CTCTTC 2 cut(s) 107, 157
Eco47I GGWCC 1 cut(s) 340
Eco57I CTGAAG 1 cut(s) 402
Esp3I CGTCTC 1 cut(s) 409
FaeI CATG 4 cut(s) 13, 43, 303, 312
FaiI YATR 6 cut(s) 11, 41, 175, 301, 310, 390
FatI CATG 4 cut(s) 9, 39, 299, 308
FblI GTMKAC 1 cut(s) 174
Fnu4HI GCNGC 1 cut(s) 275
FokI GGATG 1 cut(s) 130
Fsp4HI GCNGC 1 cut(s) 275
GluI GCNGC 1 cut(s) 275
GsaI CCCAGC 1 cut(s) 297
GsuI CTGGAG 1 cut(s) 210
HaeIII GGCC 1 cut(s) 196
HgaI GACGC 1 cut(s) 391
Hin1II CATG 4 cut(s) 13, 43, 303, 312
HincII GTYRAC 1 cut(s) 6
HindII GTYRAC 1 cut(s) 6
HinfI GANTC 2 cut(s) 233, 248
HphI GGTGA 1 cut(s) 215
Hpy166II GTNNAC 4 cut(s) 6, 175, 340, 452
Hpy188I TCNGA 3 cut(s) 47, 349, 421
Hpy188III TCNNGA 2 cut(s) 156, 227
Hpy8I GTNNAC 4 cut(s) 6, 175, 340, 452
HpyAV CCTTC 3 cut(s) 367, 373, 377
HpyCH4III ACNGT 5 cut(s) 19, 74, 203, 337, 456
HpyCH4V TGCA 6 cut(s) 39, 53, 64, 263, 288, 314
HpyF10VI GCNNNNNNNGC 2 cut(s) 193, 260
HpyF3I CTNAG 4 cut(s) 33, 44, 57, 255
Hsp92II CATG 4 cut(s) 13, 43, 303, 312
Kzo9I GATC 2 cut(s) 104, 429
LmnI GCTCC 2 cut(s) 229, 308
LpnPI CCDG 8 cut(s) 210, 240, 249, 279, 300, 315, 356, 412
Lsp1109I GCAGC 1 cut(s) 261
LweI GCATC 3 cut(s) 51, 152, 211
MalI GATC 2 cut(s) 106, 431
MboI GATC 2 cut(s) 104, 429
MboII GAAGA 4 cut(s) 87, 124, 144, 408
MflI RGATCY 1 cut(s) 104
MluCI AATT 1 cut(s) 65
MlyI GAGTC 1 cut(s) 227
MnlI CCTC 3 cut(s) 40, 160, 199
MseI TTAA 2 cut(s) 84, 183
MspA1I CMGCKG 1 cut(s) 254
Mva1269I GAATGC 1 cut(s) 265
MwoI GCNNNNNNNGC 2 cut(s) 193, 260
NdeII GATC 2 cut(s) 104, 429
NlaIII CATG 4 cut(s) 13, 43, 303, 312
NlaIV GGNNCC 1 cut(s) 355
NspI RCATGY 3 cut(s) 43, 303, 312
PaeI GCATGC 2 cut(s) 43, 303
PciI ACATGT 1 cut(s) 308
PctI GAATGC 1 cut(s) 265
PfeI GAWTC 1 cut(s) 248
PkrI GCNGC 1 cut(s) 276
PleI GAGTC 1 cut(s) 227
PpsI GAGTC 1 cut(s) 227
PscI ACATGT 1 cut(s) 308
PspFI CCCAGC 1 cut(s) 293
PspN4I GGNNCC 1 cut(s) 355
PspPI GGNCC 2 cut(s) 194, 340
PstNI CAGNNNCTG 1 cut(s) 335
PsuI RGATCY 1 cut(s) 104
PvuII CAGCTG 1 cut(s) 254
RsaI GTAC 2 cut(s) 334, 410
RsaNI GTAC 2 cut(s) 333, 409
SaqAI TTAA 2 cut(s) 84, 183
SatI GCNGC 1 cut(s) 275
Sau3AI GATC 2 cut(s) 104, 429
Sau96I GGNCC 2 cut(s) 194, 340
SchI GAGTC 1 cut(s) 227
SetI ASST 9 cut(s) 58, 152, 189, 256, 276, 295, 334, 388, 401
SfaNI GCATC 3 cut(s) 51, 152, 211
SinI GGWCC 1 cut(s) 340
SphI GCATGC 2 cut(s) 43, 303
Sse9I AATT 1 cut(s) 65
TaaI ACNGT 5 cut(s) 19, 74, 203, 337, 456
TasI AATT 1 cut(s) 65
TfiI GAWTC 1 cut(s) 248
Tru1I TTAA 2 cut(s) 84, 183
Tru9I TTAA 2 cut(s) 84, 183
TscAI CASTG 1 cut(s) 41
TseI GCWGC 1 cut(s) 274
TspDTI ATGAA 1 cut(s) 392
TspRI CASTG 1 cut(s) 41
VpaK11BI GGWCC 1 cut(s) 340
XceI RCATGY 3 cut(s) 43, 303, 312
XmiI GTMKAC 1 cut(s) 174
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.