RLG00000014160

Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0003912
Physical Location & Seq
Forward (+)
48345184 .. 48345847
664 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000014160

Sequence Viewer

Length: 573 bp
ATGGCAGTATACAAGGTTAAGCTGATTGGGCCAGATGGTGAGGAGAACGAGTTTGACGCTCCAGATGACTCTTACATCTTGGATTCAGCTGAGAACGCAGGAGTTGAGCTGCCCTATTCTTGCAGGGCTGGGGCATGCTCCACCTGCGCAGGAAAGATGGTAGCAGGTGCAGTGGACCAGTCGGATGGTTCCTTCCTCGATGACAACCAAATGAAGGAGGGTTATGTGCTGACCTGTGTCTCGTATCCAACTTCAGACTGCGTGATCCACACTCACAAGGAAAGTGAACTGTTCTCATGGACCTTGTTCTGTTTCATGGTGTTTGTTGTGGAGTTTAGTATCCAGTCTCAGTTTAAATATAATGTTACTGCCTCGATTTCAGTAGATTGCTCCCACGTACTTAACAGATTTAGAGATGAACTTGATAGTAATCCTACTAAGGATCCTAAGAAAAATATTGAAATGTTCATAATGAGCAGAGAAATTATTCACTTATCTGAGCAAACCAAATTGGATTTTCTGACTGCGTGGGCTATTTCAAAGGATGGACAATGCCCAGAAATGTTGACCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00195 map00195
Pfam Domains
Protein Families
Fer2

Protein Analysis

191

Amino Acids

21.23

Weight (kDa)

4.48

Isoelectric Point (pI)

36.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Fer2 PF00111 11 - 84 7.3e-23 2Fe-2S iron-sulfur cluster binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 152, 155
Acc16I TGCGCA 1 cut(s) 148
Acc36I ACCTGC 2 cut(s) 152, 155
AccI GTMKAC 1 cut(s) 9
AclWI GGATC 3 cut(s) 259, 437, 450
AcuI CTGAAG 1 cut(s) 237
AfaI GTAC 1 cut(s) 399
AfiI CCNNNNNNNGG 1 cut(s) 214
AgsI TTSAA 2 cut(s) 461, 540
AluBI AGCT 3 cut(s) 22, 89, 109
AluI AGCT 3 cut(s) 22, 89, 109
Alw26I GTCTC 2 cut(s) 244, 351
AlwI GGATC 3 cut(s) 259, 437, 450
AoxI GGCC 1 cut(s) 29
ApeKI GCWGC 1 cut(s) 109
Asp700I GAANNNNTTC 1 cut(s) 486
AspLEI GCGC 1 cut(s) 149
AspS9I GGNCC 3 cut(s) 29, 175, 300
AsuHPI GGTGA 1 cut(s) 50
AvaII GGWCC 2 cut(s) 175, 300
BamHI GGATCC 1 cut(s) 442
BbvI GCAGC 1 cut(s) 96
BccI CCATC 4 cut(s) 29, 151, 179, 539
BciVI GTATCC 2 cut(s) 255, 350
BcoDI GTCTC 2 cut(s) 244, 351
BfuAI ACCTGC 2 cut(s) 152, 155
BfuI GTATCC 2 cut(s) 255, 350
BisI GCNGC 1 cut(s) 110
BlsI GCNGC 1 cut(s) 111
Bme18I GGWCC 2 cut(s) 175, 300
BmgT120I GGNCC 3 cut(s) 29, 175, 300
BmiI GGNNCC 2 cut(s) 190, 444
BoxI GACNNNNGTC 1 cut(s) 236
BpmI CTGGAG 1 cut(s) 45
BsaAI YACGTR 1 cut(s) 397
BsaBI GATNNNNATC 1 cut(s) 429
BsaXI ACNNNNNCTCC 2 cut(s) 35, 65
Bsc4I CCNNNNNNNGG 1 cut(s) 214
Bse1I ACTGG 2 cut(s) 178, 343
Bse8I GATNNNNATC 1 cut(s) 429
BseGI GGATG 2 cut(s) 190, 550
BseJI GATNNNNATC 1 cut(s) 429
BseLI CCNNNNNNNGG 1 cut(s) 214
BseMII CTCAG 3 cut(s) 81, 362, 489
BseNI ACTGG 2 cut(s) 178, 343
BseRI GAGGAG 1 cut(s) 56
BseXI GCAGC 1 cut(s) 96
BseYI CCCAGC 1 cut(s) 128
BsgI GTGCAG 1 cut(s) 189
BshFI GGCC 1 cut(s) 31
BslI CCNNNNNNNGG 1 cut(s) 214
BsmAI GTCTC 2 cut(s) 244, 351
BsnI GGCC 1 cut(s) 31
Bsp143I GATC 2 cut(s) 264, 442
BspANI GGCC 1 cut(s) 31
BspCNI CTCAG 3 cut(s) 82, 361, 490
BspLI GGNNCC 2 cut(s) 190, 444
BspMI ACCTGC 2 cut(s) 152, 155
BspPI GGATC 3 cut(s) 259, 437, 450
BsrI ACTGG 2 cut(s) 178, 343
BssMI GATC 2 cut(s) 264, 442
BssNAI GTATAC 1 cut(s) 10
Bst1107I GTATAC 1 cut(s) 10
Bst4CI ACNGT 1 cut(s) 291
BstBAI YACGTR 1 cut(s) 397
BstC8I GCNNGC 1 cut(s) 136
BstDEI CTNAG 5 cut(s) 90, 348, 438, 447, 498
BstF5I GGATG 2 cut(s) 190, 550
BstHHI GCGC 1 cut(s) 149
BstKTI GATC 2 cut(s) 267, 445
BstMAI GTCTC 2 cut(s) 244, 351
BstMBI GATC 2 cut(s) 264, 442
BstMWI GCNNNNNNNGC 3 cut(s) 28, 95, 144
BstNSI RCATGY 1 cut(s) 138
BstPAI GACNNNNGTC 1 cut(s) 236
BstV1I GCAGC 1 cut(s) 96
BstX2I RGATCY 1 cut(s) 442
BstXI CCANNNNNNTGG 1 cut(s) 185
BstYI RGATCY 1 cut(s) 442
BstZ17I GTATAC 1 cut(s) 10
BsuI GTATCC 2 cut(s) 255, 350
BsuRI GGCC 1 cut(s) 31
BtsCI GGATG 2 cut(s) 190, 550
BtsI GCAGTG 1 cut(s) 177
BtsIMutI CAGTG 1 cut(s) 177
BveI ACCTGC 2 cut(s) 152, 155
Cac8I GCNNGC 1 cut(s) 136
CfoI GCGC 1 cut(s) 149
Cfr13I GGNCC 3 cut(s) 29, 175, 300
CseI GACGC 1 cut(s) 65
Csp6I GTAC 1 cut(s) 398
CviAII CATG 3 cut(s) 135, 297, 316
CviJI RGCY 6 cut(s) 22, 31, 89, 109, 128, 533
CviKI_1 RGCY 6 cut(s) 22, 31, 89, 109, 128, 533
CviQI GTAC 1 cut(s) 398
DdeI CTNAG 5 cut(s) 90, 348, 438, 447, 498
DpnI GATC 2 cut(s) 266, 444
DpnII GATC 2 cut(s) 264, 442
DraI TTTAAA 1 cut(s) 355
Eco47I GGWCC 2 cut(s) 175, 300
Eco57I CTGAAG 1 cut(s) 237
FaeI CATG 3 cut(s) 138, 300, 319
FaiI YATR 7 cut(s) 10, 136, 225, 298, 317, 360, 470
FatI CATG 3 cut(s) 134, 296, 315
FblI GTMKAC 1 cut(s) 9
Fnu4HI GCNGC 1 cut(s) 110
FokI GGATG 2 cut(s) 197, 557
Fsp4HI GCNGC 1 cut(s) 110
FspI TGCGCA 1 cut(s) 148
GlaI GCGC 1 cut(s) 148
GluI GCNGC 1 cut(s) 110
GsaI CCCAGC 1 cut(s) 132
GsuI CTGGAG 1 cut(s) 45
HaeIII GGCC 1 cut(s) 31
HgaI GACGC 1 cut(s) 65
HhaI GCGC 1 cut(s) 149
Hin1II CATG 3 cut(s) 138, 300, 319
Hin6I GCGC 1 cut(s) 147
HinP1I GCGC 1 cut(s) 147
HincII GTYRAC 1 cut(s) 567
HindII GTYRAC 1 cut(s) 567
HinfI GANTC 2 cut(s) 68, 83
HphI GGTGA 1 cut(s) 50
Hpy166II GTNNAC 4 cut(s) 10, 175, 287, 567
Hpy188I TCNGA 4 cut(s) 184, 256, 499, 522
Hpy188III TCNNGA 1 cut(s) 62
Hpy8I GTNNAC 4 cut(s) 10, 175, 287, 567
HpyAV CCTTC 2 cut(s) 202, 208
HpyCH4III ACNGT 1 cut(s) 291
HpyCH4IV ACGT 1 cut(s) 396
HpyCH4V TGCA 2 cut(s) 123, 170
HpyF10VI GCNNNNNNNGC 3 cut(s) 28, 95, 144
HpyF3I CTNAG 5 cut(s) 90, 348, 438, 447, 498
HpySE526I ACGT 1 cut(s) 396
Hsp92II CATG 3 cut(s) 138, 300, 319
HspAI GCGC 1 cut(s) 147
Kzo9I GATC 2 cut(s) 264, 442
LmnI GCTCC 3 cut(s) 64, 143, 395
Lsp1109I GCAGC 1 cut(s) 96
MaeII ACGT 1 cut(s) 396
MaeIII GTNAC 1 cut(s) 364
MalI GATC 2 cut(s) 266, 444
MboI GATC 2 cut(s) 264, 442
MflI RGATCY 1 cut(s) 442
MluCI AATT 2 cut(s) 483, 509
MlyI GAGTC 1 cut(s) 62
MmeI TCCRAC 2 cut(s) 162, 272
MnlI CCTC 4 cut(s) 34, 206, 211, 382
MroXI GAANNNNTTC 1 cut(s) 486
MseI TTAA 3 cut(s) 18, 354, 402
MspA1I CMGCKG 1 cut(s) 89
MwoI GCNNNNNNNGC 3 cut(s) 28, 95, 144
NdeII GATC 2 cut(s) 264, 442
NlaIII CATG 3 cut(s) 138, 300, 319
NlaIV GGNNCC 2 cut(s) 190, 444
NsbI TGCGCA 1 cut(s) 148
NspI RCATGY 1 cut(s) 138
PaeI GCATGC 1 cut(s) 138
PaqCI CACCTGC 2 cut(s) 152, 155
PdmI GAANNNNTTC 1 cut(s) 486
PfeI GAWTC 1 cut(s) 83
PkrI GCNGC 1 cut(s) 111
PleI GAGTC 1 cut(s) 62
PpsI GAGTC 1 cut(s) 62
Ppu21I YACGTR 1 cut(s) 397
PshAI GACNNNNGTC 1 cut(s) 236
PspFI CCCAGC 1 cut(s) 128
PspN4I GGNNCC 2 cut(s) 190, 444
PspPI GGNCC 3 cut(s) 29, 175, 300
PsuI RGATCY 1 cut(s) 442
PvuII CAGCTG 1 cut(s) 89
RsaI GTAC 1 cut(s) 399
RsaNI GTAC 1 cut(s) 398
SaqAI TTAA 3 cut(s) 18, 354, 402
SatI GCNGC 1 cut(s) 110
Sau3AI GATC 2 cut(s) 264, 442
Sau96I GGNCC 3 cut(s) 29, 175, 300
SchI GAGTC 1 cut(s) 62
SinI GGWCC 2 cut(s) 175, 300
SphI GCATGC 1 cut(s) 138
Sse9I AATT 2 cut(s) 483, 509
SspI AATATT 1 cut(s) 457
TaaI ACNGT 1 cut(s) 291
TaiI ACGT 1 cut(s) 399
TaqI TCGA 2 cut(s) 198, 374
TasI AATT 2 cut(s) 483, 509
TfiI GAWTC 1 cut(s) 83
Tru1I TTAA 3 cut(s) 18, 354, 402
Tru9I TTAA 3 cut(s) 18, 354, 402
TscAI CASTG 1 cut(s) 177
TseI GCWGC 1 cut(s) 109
TspDTI ATGAA 4 cut(s) 227, 304, 432, 457
TspRI CASTG 1 cut(s) 177
VpaK11BI GGWCC 2 cut(s) 175, 300
XceI RCATGY 1 cut(s) 138
XmiI GTMKAC 1 cut(s) 9
XmnI GAANNNNTTC 1 cut(s) 486
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.