Rw5G027760

Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
OG0003912
Physical Location & Seq
Forward (+)
41350269 .. 41350721
453 bp
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UTR
Exon/CDS
Intron
Rw5G027760.1

Sequence Viewer

Length: 453 bp
ATGACAACTGTGAACGTTCCCTCTCAGTGCATGCTCAGAAATGCACCTAAGATTCAATTCACCAGTTCTATCATTAAGTTCTCATCTTCACTTGGATCTGTGAAGAGTGTCTCCAAGTCTTTTGGCTTGAAAGCATCCACCTCTTCCCGAACATCAATGGCAGTATACAAGATTAAGCTGATTGGGCCAGACGGTGAGGAAAACGAGTTTGATGCTCCAGATGACTCTTACATCTTGGATTCAGCTGAGAATGCAGGAGTTGAGCTGCCCTATTCTTGCAGAGCTGGGGCATGCTCCACATGTGCAGGAAAGATGGTAGCAGGTACTGTGGACCAGTCTGATGGTTCCTTCCTTGATGATAACCAAATGAAGGAAGGTTATGTGCTAACCTGCGTCTCGTACCCATCTTCAGACTGCGTGATCCACACTCACAAGGAAAGTGAACTGTATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00195 map00195
Pfam Domains
Protein Families
Fer2

Protein Analysis

150

Amino Acids

16.06

Weight (kDa)

4.93

Isoelectric Point (pI)

42.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Fer2 PF00111 63 - 135 4e-23 2Fe-2S iron-sulfur cluster binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 311, 398
AccI GTMKAC 1 cut(s) 165
AclI AACGTT 1 cut(s) 15
AclWI GGATC 2 cut(s) 103, 415
AcuI CTGAAG 1 cut(s) 393
AfaI GTAC 2 cut(s) 325, 401
AfiI CCNNNNNNNGG 1 cut(s) 370
AflIII ACRYGT 1 cut(s) 299
AgsI TTSAA 2 cut(s) 56, 130
AluBI AGCT 4 cut(s) 178, 245, 265, 284
AluI AGCT 4 cut(s) 178, 245, 265, 284
Alw26I GTCTC 2 cut(s) 115, 400
AlwI GGATC 2 cut(s) 103, 415
AlwNI CAGNNNCTG 1 cut(s) 326
AoxI GGCC 1 cut(s) 185
ApeKI GCWGC 1 cut(s) 265
AspS9I GGNCC 2 cut(s) 185, 331
AsuHPI GGTGA 2 cut(s) 52, 206
AvaII GGWCC 1 cut(s) 331
BbvI GCAGC 1 cut(s) 252
BccI CCATC 3 cut(s) 307, 335, 412
BcgI CGANNNNNNTGC 2 cut(s) 194, 228
BcoDI GTCTC 2 cut(s) 115, 400
BfuAI ACCTGC 2 cut(s) 311, 398
BisI GCNGC 1 cut(s) 266
BlsI GCNGC 1 cut(s) 267
Bme18I GGWCC 1 cut(s) 331
BmgT120I GGNCC 2 cut(s) 185, 331
BmiI GGNNCC 1 cut(s) 346
BmsI GCATC 2 cut(s) 143, 202
BpmI CTGGAG 1 cut(s) 201
Bsc4I CCNNNNNNNGG 1 cut(s) 370
Bse1I ACTGG 2 cut(s) 63, 334
BseGI GGATG 1 cut(s) 134
BseLI CCNNNNNNNGG 1 cut(s) 370
BseMII CTCAG 3 cut(s) 38, 49, 237
BseNI ACTGG 2 cut(s) 63, 334
BseXI GCAGC 1 cut(s) 252
BseYI CCCAGC 1 cut(s) 284
BsgI GTGCAG 1 cut(s) 324
BshFI GGCC 1 cut(s) 187
BslI CCNNNNNNNGG 1 cut(s) 370
BsmAI GTCTC 2 cut(s) 115, 400
BsmBI CGTCTC 1 cut(s) 400
BsmI GAATGC 1 cut(s) 256
BsnI GGCC 1 cut(s) 187
Bsp143I GATC 2 cut(s) 95, 420
BspANI GGCC 1 cut(s) 187
BspCNI CTCAG 3 cut(s) 37, 48, 238
BspLI GGNNCC 1 cut(s) 346
BspMI ACCTGC 2 cut(s) 311, 398
BspPI GGATC 2 cut(s) 103, 415
BsrI ACTGG 2 cut(s) 63, 334
BssMI GATC 2 cut(s) 95, 420
BssNAI GTATAC 1 cut(s) 166
Bst1107I GTATAC 1 cut(s) 166
Bst4CI ACNGT 4 cut(s) 10, 194, 328, 447
Bst6I CTCTTC 2 cut(s) 98, 148
BstC8I GCNNGC 2 cut(s) 32, 292
BstDEI CTNAG 4 cut(s) 24, 35, 48, 246
BstF5I GGATG 1 cut(s) 134
BstKTI GATC 2 cut(s) 98, 423
BstMAI GTCTC 2 cut(s) 115, 400
BstMBI GATC 2 cut(s) 95, 420
BstMWI GCNNNNNNNGC 2 cut(s) 184, 251
BstNSI RCATGY 3 cut(s) 34, 294, 303
BstV1I GCAGC 1 cut(s) 252
BstX2I RGATCY 1 cut(s) 95
BstXI CCANNNNNNTGG 1 cut(s) 341
BstYI RGATCY 1 cut(s) 95
BstZ17I GTATAC 1 cut(s) 166
BsuRI GGCC 1 cut(s) 187
BtsCI GGATG 1 cut(s) 134
BtsIMutI CAGTG 1 cut(s) 32
BveI ACCTGC 2 cut(s) 311, 398
Cac8I GCNNGC 2 cut(s) 32, 292
CaiI CAGNNNCTG 1 cut(s) 326
Cfr13I GGNCC 2 cut(s) 185, 331
CseI GACGC 1 cut(s) 382
Csp6I GTAC 2 cut(s) 324, 400
CviAII CATG 3 cut(s) 31, 291, 300
CviJI RGCY 6 cut(s) 126, 178, 187, 245, 265, 284
CviKI_1 RGCY 6 cut(s) 126, 178, 187, 245, 265, 284
CviQI GTAC 2 cut(s) 324, 400
DdeI CTNAG 4 cut(s) 24, 35, 48, 246
DpnI GATC 2 cut(s) 97, 422
DpnII GATC 2 cut(s) 95, 420
Eam1104I CTCTTC 2 cut(s) 98, 148
EarI CTCTTC 2 cut(s) 98, 148
Eco47I GGWCC 1 cut(s) 331
Eco57I CTGAAG 1 cut(s) 393
Esp3I CGTCTC 1 cut(s) 400
FaeI CATG 3 cut(s) 34, 294, 303
FaiI YATR 5 cut(s) 32, 166, 292, 301, 381
FatI CATG 3 cut(s) 30, 290, 299
FblI GTMKAC 1 cut(s) 165
Fnu4HI GCNGC 1 cut(s) 266
FokI GGATG 1 cut(s) 121
Fsp4HI GCNGC 1 cut(s) 266
GluI GCNGC 1 cut(s) 266
GsaI CCCAGC 1 cut(s) 288
GsuI CTGGAG 1 cut(s) 201
HaeIII GGCC 1 cut(s) 187
HgaI GACGC 1 cut(s) 382
Hin1II CATG 3 cut(s) 34, 294, 303
HinfI GANTC 3 cut(s) 52, 224, 239
HphI GGTGA 2 cut(s) 52, 206
Hpy166II GTNNAC 4 cut(s) 13, 166, 331, 443
Hpy188I TCNGA 3 cut(s) 38, 340, 412
Hpy188III TCNNGA 2 cut(s) 147, 218
Hpy8I GTNNAC 4 cut(s) 13, 166, 331, 443
HpyAV CCTTC 3 cut(s) 358, 364, 368
HpyCH4III ACNGT 4 cut(s) 10, 194, 328, 447
HpyCH4IV ACGT 1 cut(s) 15
HpyCH4V TGCA 5 cut(s) 30, 44, 254, 279, 305
HpyF10VI GCNNNNNNNGC 2 cut(s) 184, 251
HpyF3I CTNAG 4 cut(s) 24, 35, 48, 246
HpySE526I ACGT 1 cut(s) 15
Hsp92II CATG 3 cut(s) 34, 294, 303
Kzo9I GATC 2 cut(s) 95, 420
LmnI GCTCC 2 cut(s) 220, 299
LpnPI CCDG 9 cut(s) 76, 201, 231, 240, 270, 291, 306, 347, 403
Lsp1109I GCAGC 1 cut(s) 252
LweI GCATC 2 cut(s) 143, 202
MaeII ACGT 1 cut(s) 15
MalI GATC 2 cut(s) 97, 422
MboI GATC 2 cut(s) 95, 420
MboII GAAGA 4 cut(s) 78, 115, 135, 399
MflI RGATCY 1 cut(s) 95
MluCI AATT 1 cut(s) 56
MlyI GAGTC 1 cut(s) 218
MnlI CCTC 3 cut(s) 31, 151, 190
MseI TTAA 2 cut(s) 75, 174
MspA1I CMGCKG 1 cut(s) 245
Mva1269I GAATGC 1 cut(s) 256
MwoI GCNNNNNNNGC 2 cut(s) 184, 251
NdeII GATC 2 cut(s) 95, 420
NlaIII CATG 3 cut(s) 34, 294, 303
NlaIV GGNNCC 1 cut(s) 346
NspI RCATGY 3 cut(s) 34, 294, 303
PaeI GCATGC 2 cut(s) 34, 294
PciI ACATGT 1 cut(s) 299
PctI GAATGC 1 cut(s) 256
PfeI GAWTC 2 cut(s) 52, 239
PkrI GCNGC 1 cut(s) 267
PleI GAGTC 1 cut(s) 218
PpsI GAGTC 1 cut(s) 218
PscI ACATGT 1 cut(s) 299
Psp1406I AACGTT 1 cut(s) 15
PspFI CCCAGC 1 cut(s) 284
PspN4I GGNNCC 1 cut(s) 346
PspPI GGNCC 2 cut(s) 185, 331
PstNI CAGNNNCTG 1 cut(s) 326
PsuI RGATCY 1 cut(s) 95
PvuII CAGCTG 1 cut(s) 245
RsaI GTAC 2 cut(s) 325, 401
RsaNI GTAC 2 cut(s) 324, 400
SaqAI TTAA 2 cut(s) 75, 174
SatI GCNGC 1 cut(s) 266
Sau3AI GATC 2 cut(s) 95, 420
Sau96I GGNCC 2 cut(s) 185, 331
SchI GAGTC 1 cut(s) 218
SfaNI GCATC 2 cut(s) 143, 202
SinI GGWCC 1 cut(s) 331
SphI GCATGC 2 cut(s) 34, 294
Sse9I AATT 1 cut(s) 56
TaaI ACNGT 4 cut(s) 10, 194, 328, 447
TaiI ACGT 1 cut(s) 18
TasI AATT 1 cut(s) 56
TfiI GAWTC 2 cut(s) 52, 239
Tru1I TTAA 2 cut(s) 75, 174
Tru9I TTAA 2 cut(s) 75, 174
TscAI CASTG 1 cut(s) 32
TseI GCWGC 1 cut(s) 265
TspDTI ATGAA 1 cut(s) 383
TspRI CASTG 1 cut(s) 32
VpaK11BI GGWCC 1 cut(s) 331
XceI RCATGY 3 cut(s) 34, 294, 303
XmiI GTMKAC 1 cut(s) 165
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.