Rorug06G0019400

Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0003912
Physical Location & Seq
Reverse (-)
2511069 .. 2511919
851 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0019400.1

Sequence Viewer

Length: 561 bp
ATGGCAAACAACACAGTTGCGCCTCTGATGATGATGGTCGTCATCTCCTTGGTGATGGCATTCACAGAAGCCAAGTGGGCCGAGTCAGTAGAGGCCAAAAAGGAAGCGACGCCGTCGGAGACAGTAACCAACCTCCAGTTCTTCTTCCACGACACAGTCAGTGGGAAGAACCCTAGTGCCGTACGTGTGGCTCAAGCCTCCGACACCAATAAGTCTCTGACACTTTTCGGGGCTTTACTCATGGCCGATGACCCGCTCACCGAGACTCCCGACCCCAATTCCAAGCTCGTGGGTCGGGCACAAGGGCTATACGGGTCATCCGGCCAGCAGGAGCTTGGCCTGATTATGGCTATGAGCTTTGCGTTCATGGATGGTCCTTACAGTGGTAGTTCCATTAGTATATTTGGTAAAAACTCGGCACTGAACCCAGTTCGAGAGTTGCCGGTTGTGGGTGGAACTGGGGTGTTCCGGCTGGCTCGTGGATATGCAATTGCCCATACTCATTGGTTTGATCTTAGTGGTGATGCAATTGTAGGATACAATGTCACTGTGATTCACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00195 map00195
Pfam Domains
Protein Families
Fer2

Protein Analysis

186

Amino Acids

19.83

Weight (kDa)

5.48

Isoelectric Point (pI)

21.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Dirigent PF03018 42 - 184 8.8e-54 Dirigent-like protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 256
AciI CCGC 1 cut(s) 254
AcoI YGGCCR 2 cut(s) 243, 322
AcyI GRCGYC 1 cut(s) 110
AfaI GTAC 1 cut(s) 183
AfiI CCNNNNNNNGG 3 cut(s) 346, 383, 449
AflIII ACRYGT 1 cut(s) 184
AjuI GAANNNNNNNTTGG 2 cut(s) 122, 154
AluBI AGCT 3 cut(s) 286, 334, 357
AluI AGCT 3 cut(s) 286, 334, 357
Alw26I GTCTC 3 cut(s) 113, 219, 257
AoxI GGCC 5 cut(s) 78, 93, 243, 322, 337
AspLEI GCGC 1 cut(s) 22
AspS9I GGNCC 2 cut(s) 78, 374
AsuHPI GGTGA 3 cut(s) 64, 250, 533
AvaII GGWCC 1 cut(s) 374
BaeGI GKGCMC 1 cut(s) 301
BauI CACGAG 2 cut(s) 287, 477
BccI CCATC 3 cut(s) 28, 49, 365
BceAI ACGGC 2 cut(s) 97, 164
BciVI GTATCC 1 cut(s) 530
BcoDI GTCTC 3 cut(s) 113, 219, 257
BfaI CTAG 2 cut(s) 174, 559
BfuI GTATCC 1 cut(s) 530
BglI GCCNNNNNGGC 1 cut(s) 77
Bme18I GGWCC 1 cut(s) 374
BmgT120I GGNCC 2 cut(s) 78, 374
BmrI ACTGGG 2 cut(s) 422, 468
BmsI GCATC 1 cut(s) 514
BmuI ACTGGG 2 cut(s) 422, 468
BpmI CTGGAG 1 cut(s) 119
BpuEI CTTGAG 1 cut(s) 177
BsaAI YACGTR 1 cut(s) 185
BsaHI GRCGYC 1 cut(s) 110
BsaJI CCNNGG 1 cut(s) 48
BsaXI ACNNNNNCTCC 2 cut(s) 250, 280
Bsc4I CCNNNNNNNGG 3 cut(s) 346, 383, 449
Bse118I RCCGGY 1 cut(s) 442
Bse1I ACTGG 3 cut(s) 136, 428, 463
BseDI CCNNGG 1 cut(s) 48
BseGI GGATG 2 cut(s) 317, 376
BseLI CCNNNNNNNGG 3 cut(s) 346, 383, 449
BseNI ACTGG 3 cut(s) 136, 428, 463
BseSI GKGCMC 1 cut(s) 301
BshFI GGCC 5 cut(s) 80, 95, 245, 324, 339
BsiSI CCGG 3 cut(s) 321, 443, 469
BsiWI CGTACG 1 cut(s) 181
BslI CCNNNNNNNGG 3 cut(s) 346, 383, 449
BsmAI GTCTC 3 cut(s) 113, 219, 257
BsmI GAATGC 1 cut(s) 59
BsnI GGCC 5 cut(s) 80, 95, 245, 324, 339
Bsp1286I GDGCHC 1 cut(s) 301
Bsp143I GATC 1 cut(s) 511
BspACI CCGC 1 cut(s) 254
BspANI GGCC 5 cut(s) 80, 95, 245, 324, 339
BsrBI CCGCTC 1 cut(s) 256
BsrFI RCCGGY 1 cut(s) 442
BsrI ACTGG 3 cut(s) 136, 428, 463
BssAI RCCGGY 1 cut(s) 442
BssECI CCNNGG 1 cut(s) 48
BssMI GATC 1 cut(s) 511
BssNI GRCGYC 1 cut(s) 110
BssSI CACGAG 2 cut(s) 287, 477
BssT1I CCWWGG 1 cut(s) 48
Bst2BI CACGAG 2 cut(s) 287, 477
Bst4CI ACNGT 5 cut(s) 16, 124, 157, 383, 550
BstACI GRCGYC 1 cut(s) 110
BstBAI YACGTR 1 cut(s) 185
BstC8I GCNNGC 2 cut(s) 326, 474
BstDEI CTNAG 1 cut(s) 515
BstF5I GGATG 2 cut(s) 317, 376
BstHHI GCGC 1 cut(s) 22
BstKTI GATC 1 cut(s) 514
BstMAI GTCTC 3 cut(s) 113, 219, 257
BstMBI GATC 1 cut(s) 511
BstMWI GCNNNNNNNGC 1 cut(s) 77
BstSLI GKGCMC 1 cut(s) 301
BstXI CCANNNNNNTGG 1 cut(s) 289
BsuI GTATCC 1 cut(s) 530
BsuRI GGCC 5 cut(s) 80, 95, 245, 324, 339
BtsCI GGATG 2 cut(s) 317, 376
BtsIMutI CAGTG 4 cut(s) 166, 388, 419, 546
Cac8I GCNNGC 2 cut(s) 326, 474
CfoI GCGC 1 cut(s) 22
Cfr10I RCCGGY 1 cut(s) 442
Cfr13I GGNCC 2 cut(s) 78, 374
CseI GACGC 1 cut(s) 118
Csp6I GTAC 1 cut(s) 182
CviAII CATG 2 cut(s) 241, 367
CviQI GTAC 1 cut(s) 182
DdeI CTNAG 1 cut(s) 515
DpnI GATC 1 cut(s) 513
DpnII GATC 1 cut(s) 511
EaeI YGGCCR 2 cut(s) 243, 322
Eco130I CCWWGG 1 cut(s) 48
Eco47I GGWCC 1 cut(s) 374
EcoT14I CCWWGG 1 cut(s) 48
ErhI CCWWGG 1 cut(s) 48
FaeI CATG 2 cut(s) 244, 370
FaiI YATR 8 cut(s) 242, 310, 347, 353, 368, 401, 486, 498
FatI CATG 2 cut(s) 240, 366
FauI CCCGC 1 cut(s) 261
FokI GGATG 2 cut(s) 304, 383
FspBI CTAG 2 cut(s) 174, 559
GlaI GCGC 1 cut(s) 21
GsuI CTGGAG 1 cut(s) 119
HaeIII GGCC 5 cut(s) 80, 95, 245, 324, 339
HapII CCGG 3 cut(s) 321, 443, 469
HgaI GACGC 1 cut(s) 118
HhaI GCGC 1 cut(s) 22
Hin1I GRCGYC 1 cut(s) 110
Hin1II CATG 2 cut(s) 244, 370
Hin6I GCGC 1 cut(s) 20
HinP1I GCGC 1 cut(s) 20
HinfI GANTC 3 cut(s) 83, 265, 553
HpaII CCGG 3 cut(s) 321, 443, 469
HphI GGTGA 3 cut(s) 64, 250, 533
Hpy188I TCNGA 4 cut(s) 27, 118, 202, 219
Hpy188III TCNNGA 2 cut(s) 269, 434
Hpy99I CGWCG 2 cut(s) 112, 118
HpyCH4III ACNGT 5 cut(s) 16, 124, 157, 383, 550
HpyCH4IV ACGT 1 cut(s) 184
HpyCH4V TGCA 2 cut(s) 488, 527
HpyF10VI GCNNNNNNNGC 1 cut(s) 77
HpyF3I CTNAG 1 cut(s) 515
HpySE526I ACGT 1 cut(s) 184
Hsp92I GRCGYC 1 cut(s) 110
Hsp92II CATG 2 cut(s) 244, 370
HspAI GCGC 1 cut(s) 20
Kzo9I GATC 1 cut(s) 511
LmnI GCTCC 1 cut(s) 331
LweI GCATC 1 cut(s) 514
MaeI CTAG 2 cut(s) 174, 559
MaeII ACGT 1 cut(s) 184
MaeIII GTNAC 2 cut(s) 124, 544
MalI GATC 1 cut(s) 513
MbiI CCGCTC 1 cut(s) 256
MboI GATC 1 cut(s) 511
MboII GAAGA 3 cut(s) 133, 136, 178
MfeI CAATTG 2 cut(s) 489, 528
MhlI GDGCHC 1 cut(s) 301
MluCI AATT 3 cut(s) 277, 489, 528
MlyI GAGTC 2 cut(s) 92, 259
MmeI TCCRAC 2 cut(s) 96, 225
MnlI CCTC 4 cut(s) 33, 85, 143, 208
MspI CCGG 3 cut(s) 321, 443, 469
MunI CAATTG 2 cut(s) 489, 528
Mva1269I GAATGC 1 cut(s) 59
MwoI GCNNNNNNNGC 1 cut(s) 77
NdeII GATC 1 cut(s) 511
NlaIII CATG 2 cut(s) 244, 370
NmeAIII GCCGAG 2 cut(s) 106, 395
NmuCI GTSAC 1 cut(s) 544
PctI GAATGC 1 cut(s) 59
PfeI GAWTC 1 cut(s) 553
Pfl23II CGTACG 1 cut(s) 181
PflFI GACNNNGTC 2 cut(s) 112, 155
PleI GAGTC 2 cut(s) 91, 259
PpsI GAGTC 2 cut(s) 91, 259
Ppu21I YACGTR 1 cut(s) 185
PspLI CGTACG 1 cut(s) 181
PspPI GGNCC 2 cut(s) 78, 374
PsyI GACNNNGTC 2 cut(s) 112, 155
RsaI GTAC 1 cut(s) 183
RsaNI GTAC 1 cut(s) 182
Sau3AI GATC 1 cut(s) 511
Sau96I GGNCC 2 cut(s) 78, 374
SchI GAGTC 2 cut(s) 92, 259
SduI GDGCHC 1 cut(s) 301
SetI ASST 5 cut(s) 135, 187, 288, 336, 359
SfaNI GCATC 1 cut(s) 514
SinI GGWCC 1 cut(s) 374
SmlI CTYRAG 1 cut(s) 192
SmoI CTYRAG 1 cut(s) 192
Sse9I AATT 3 cut(s) 277, 489, 528
SsiI CCGC 1 cut(s) 254
SspMI CTAG 2 cut(s) 174, 559
StyI CCWWGG 1 cut(s) 48
TaaI ACNGT 5 cut(s) 16, 124, 157, 383, 550
TaiI ACGT 1 cut(s) 187
TaqI TCGA 1 cut(s) 433
TasI AATT 3 cut(s) 277, 489, 528
TfiI GAWTC 1 cut(s) 553
TscAI CASTG 4 cut(s) 166, 388, 426, 553
TseFI GTSAC 1 cut(s) 544
Tsp45I GTSAC 1 cut(s) 544
TspDTI ATGAA 1 cut(s) 355
TspRI CASTG 4 cut(s) 166, 388, 426, 553
Tth111I GACNNNGTC 2 cut(s) 112, 155
VpaK11BI GGWCC 1 cut(s) 374
XcmI CCANNNNNNNNNTGG 1 cut(s) 332
XspI CTAG 2 cut(s) 174, 559
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.