Rroxscaffold_1G00036330

Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0003912
Physical Location & Seq
Reverse (-)
52988621 .. 52989856
1236 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00036330.1

Sequence Viewer

Length: 531 bp
ATGAGCTTGCTTCTTCTCATAGTGCTCCAGACATCAATTGCCTTGCCGTTTCAGAGTGATGGTTTAAACATGTCAACCATGACAACTGTGAACGTTCCCTCTCAGTGCATGCTCAGAAATGCACCTAAGATTCAATTCATCAGTTCTATCATTAAGTTCCCATCTCCACTTGGATCTGTGAAGAGTCTCTCCAAGTCTTTTGGCTTGAAAGCATCCGCCTCTTCCCGAACATCAATGGCAGTATACAAGATTAAGCTGATTGGGCCAGACGGTGAGGAAAACGAGTTTGATGCTCCAGATGATTCTTACATCTTGGATTCAGCTGAGAATGCAGGAGTTGAGCTGCCCTATTCTTGCAGAGCTGGGGCATGCTCCACATGTGCAGGAAAGATGGTAGCAGGTGCAGTGGACCAGTCTGATGGTTCCTTCCTTGATGATAACCAAATGAAGGAAGGTTATGTGCTAACCTGCGTCTCGTACCCATCTTCAGACTGCGTGATCCACACTCACAAGGAAAGTGAACTGTATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00195 map00195
Pfam Domains
Protein Families
Fer2

Protein Analysis

176

Amino Acids

18.84

Weight (kDa)

4.81

Isoelectric Point (pI)

51.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Fer2 PF00111 89 - 161 9.1e-23 2Fe-2S iron-sulfur cluster binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 389
Acc36I ACCTGC 2 cut(s) 389, 476
AccI GTMKAC 1 cut(s) 243
AciI CCGC 1 cut(s) 216
AclI AACGTT 1 cut(s) 93
AclWI GGATC 2 cut(s) 181, 493
AcuI CTGAAG 1 cut(s) 471
AfaI GTAC 1 cut(s) 479
AfiI CCNNNNNNNGG 1 cut(s) 448
AflIII ACRYGT 2 cut(s) 69, 377
AgsI TTSAA 2 cut(s) 134, 208
AluBI AGCT 5 cut(s) 6, 256, 323, 343, 362
AluI AGCT 5 cut(s) 6, 256, 323, 343, 362
Alw21I GWGCWC 1 cut(s) 27
Alw26I GTCTC 2 cut(s) 191, 478
AlwI GGATC 2 cut(s) 181, 493
AoxI GGCC 1 cut(s) 263
ApeKI GCWGC 1 cut(s) 343
AspS9I GGNCC 2 cut(s) 263, 409
AsuHPI GGTGA 1 cut(s) 284
AvaII GGWCC 1 cut(s) 409
Bbv12I GWGCWC 1 cut(s) 27
BbvI GCAGC 1 cut(s) 330
BccI CCATC 5 cut(s) 53, 169, 385, 413, 490
BceAI ACGGC 1 cut(s) 31
BcgI CGANNNNNNTGC 2 cut(s) 272, 306
BcoDI GTCTC 2 cut(s) 191, 478
BfuAI ACCTGC 2 cut(s) 389, 476
BisI GCNGC 1 cut(s) 344
BlsI GCNGC 1 cut(s) 345
Bme18I GGWCC 1 cut(s) 409
BmgT120I GGNCC 2 cut(s) 263, 409
BmiI GGNNCC 1 cut(s) 424
BmsI GCATC 2 cut(s) 221, 280
BpmI CTGGAG 2 cut(s) 11, 279
Bsc4I CCNNNNNNNGG 1 cut(s) 448
Bse1I ACTGG 1 cut(s) 412
BseGI GGATG 1 cut(s) 212
BseLI CCNNNNNNNGG 1 cut(s) 448
BseMII CTCAG 3 cut(s) 116, 127, 315
BseNI ACTGG 1 cut(s) 412
BseXI GCAGC 1 cut(s) 330
BseYI CCCAGC 1 cut(s) 362
BsgI GTGCAG 2 cut(s) 402, 423
BshFI GGCC 1 cut(s) 265
BsiHKAI GWGCWC 1 cut(s) 27
BslI CCNNNNNNNGG 1 cut(s) 448
BsmAI GTCTC 2 cut(s) 191, 478
BsmBI CGTCTC 1 cut(s) 478
BsmI GAATGC 1 cut(s) 334
BsnI GGCC 1 cut(s) 265
Bsp1286I GDGCHC 1 cut(s) 27
Bsp143I GATC 2 cut(s) 173, 498
BspACI CCGC 1 cut(s) 216
BspANI GGCC 1 cut(s) 265
BspCNI CTCAG 3 cut(s) 115, 126, 316
BspLI GGNNCC 1 cut(s) 424
BspMI ACCTGC 2 cut(s) 389, 476
BspPI GGATC 2 cut(s) 181, 493
BsrI ACTGG 1 cut(s) 412
BssMI GATC 2 cut(s) 173, 498
BssNAI GTATAC 1 cut(s) 244
Bst1107I GTATAC 1 cut(s) 244
Bst4CI ACNGT 3 cut(s) 88, 272, 525
Bst6I CTCTTC 2 cut(s) 176, 226
BstC8I GCNNGC 3 cut(s) 8, 110, 370
BstDEI CTNAG 4 cut(s) 102, 113, 126, 324
BstF5I GGATG 1 cut(s) 212
BstKTI GATC 2 cut(s) 176, 501
BstMAI GTCTC 2 cut(s) 191, 478
BstMBI GATC 2 cut(s) 173, 498
BstMWI GCNNNNNNNGC 2 cut(s) 262, 329
BstNSI RCATGY 4 cut(s) 73, 112, 372, 381
BstV1I GCAGC 1 cut(s) 330
BstX2I RGATCY 1 cut(s) 173
BstXI CCANNNNNNTGG 1 cut(s) 419
BstYI RGATCY 1 cut(s) 173
BstZ17I GTATAC 1 cut(s) 244
BsuRI GGCC 1 cut(s) 265
BtsCI GGATG 1 cut(s) 212
BtsI GCAGTG 1 cut(s) 411
BtsIMutI CAGTG 2 cut(s) 110, 411
BveI ACCTGC 2 cut(s) 389, 476
Cac8I GCNNGC 3 cut(s) 8, 110, 370
Cfr13I GGNCC 2 cut(s) 263, 409
CseI GACGC 1 cut(s) 460
Csp6I GTAC 1 cut(s) 478
CviAII CATG 5 cut(s) 70, 79, 109, 369, 378
CviJI RGCY 7 cut(s) 6, 204, 256, 265, 323, 343, 362
CviKI_1 RGCY 7 cut(s) 6, 204, 256, 265, 323, 343, 362
CviQI GTAC 1 cut(s) 478
DdeI CTNAG 4 cut(s) 102, 113, 126, 324
DpnI GATC 2 cut(s) 175, 500
DpnII GATC 2 cut(s) 173, 498
DraI TTTAAA 1 cut(s) 66
Eam1104I CTCTTC 2 cut(s) 176, 226
EarI CTCTTC 2 cut(s) 176, 226
EciI GGCGGA 1 cut(s) 205
Eco47I GGWCC 1 cut(s) 409
Eco57I CTGAAG 1 cut(s) 471
Esp3I CGTCTC 1 cut(s) 478
FaeI CATG 5 cut(s) 73, 82, 112, 372, 381
FaiI YATR 8 cut(s) 20, 71, 80, 110, 244, 370, 379, 459
FatI CATG 5 cut(s) 69, 78, 108, 368, 377
FblI GTMKAC 1 cut(s) 243
Fnu4HI GCNGC 1 cut(s) 344
FokI GGATG 1 cut(s) 199
Fsp4HI GCNGC 1 cut(s) 344
GluI GCNGC 1 cut(s) 344
GsaI CCCAGC 1 cut(s) 366
GsuI CTGGAG 2 cut(s) 11, 279
HaeIII GGCC 1 cut(s) 265
HgaI GACGC 1 cut(s) 460
Hin1II CATG 5 cut(s) 73, 82, 112, 372, 381
HincII GTYRAC 1 cut(s) 75
HindII GTYRAC 1 cut(s) 75
HinfI GANTC 4 cut(s) 130, 184, 302, 317
HphI GGTGA 1 cut(s) 284
Hpy166II GTNNAC 5 cut(s) 75, 91, 244, 409, 521
Hpy188I TCNGA 4 cut(s) 54, 116, 418, 490
Hpy188III TCNNGA 3 cut(s) 28, 225, 296
Hpy8I GTNNAC 5 cut(s) 75, 91, 244, 409, 521
HpyAV CCTTC 3 cut(s) 436, 442, 446
HpyCH4III ACNGT 3 cut(s) 88, 272, 525
HpyCH4IV ACGT 1 cut(s) 93
HpyCH4V TGCA 6 cut(s) 108, 122, 332, 357, 383, 404
HpyF10VI GCNNNNNNNGC 2 cut(s) 262, 329
HpyF3I CTNAG 4 cut(s) 102, 113, 126, 324
HpySE526I ACGT 1 cut(s) 93
Hsp92II CATG 5 cut(s) 73, 82, 112, 372, 381
Kzo9I GATC 2 cut(s) 173, 498
LmnI GCTCC 3 cut(s) 30, 298, 377
LpnPI CCDG 9 cut(s) 41, 279, 309, 318, 348, 369, 384, 425, 481
Lsp1109I GCAGC 1 cut(s) 330
LweI GCATC 2 cut(s) 221, 280
MaeII ACGT 1 cut(s) 93
MalI GATC 2 cut(s) 175, 500
MboI GATC 2 cut(s) 173, 498
MboII GAAGA 4 cut(s) 5, 193, 213, 477
MfeI CAATTG 1 cut(s) 36
MflI RGATCY 1 cut(s) 173
MhlI GDGCHC 1 cut(s) 27
MluCI AATT 2 cut(s) 36, 134
MlyI GAGTC 1 cut(s) 193
MnlI CCTC 3 cut(s) 109, 229, 268
MseI TTAA 3 cut(s) 65, 153, 252
MspA1I CMGCKG 1 cut(s) 323
MssI GTTTAAAC 1 cut(s) 66
MunI CAATTG 1 cut(s) 36
Mva1269I GAATGC 1 cut(s) 334
MwoI GCNNNNNNNGC 2 cut(s) 262, 329
NdeII GATC 2 cut(s) 173, 498
NlaIII CATG 5 cut(s) 73, 82, 112, 372, 381
NlaIV GGNNCC 1 cut(s) 424
NspI RCATGY 4 cut(s) 73, 112, 372, 381
PaeI GCATGC 2 cut(s) 112, 372
PaqCI CACCTGC 1 cut(s) 389
PciI ACATGT 2 cut(s) 69, 377
PctI GAATGC 1 cut(s) 334
PfeI GAWTC 3 cut(s) 130, 302, 317
PkrI GCNGC 1 cut(s) 345
PleI GAGTC 1 cut(s) 192
PmeI GTTTAAAC 1 cut(s) 66
PpsI GAGTC 1 cut(s) 192
PscI ACATGT 2 cut(s) 69, 377
Psp1406I AACGTT 1 cut(s) 93
PspFI CCCAGC 1 cut(s) 362
PspN4I GGNNCC 1 cut(s) 424
PspPI GGNCC 2 cut(s) 263, 409
PsuI RGATCY 1 cut(s) 173
PvuII CAGCTG 1 cut(s) 323
RsaI GTAC 1 cut(s) 479
RsaNI GTAC 1 cut(s) 478
SaqAI TTAA 3 cut(s) 65, 153, 252
SatI GCNGC 1 cut(s) 344
Sau3AI GATC 2 cut(s) 173, 498
Sau96I GGNCC 2 cut(s) 263, 409
SchI GAGTC 1 cut(s) 193
SduI GDGCHC 1 cut(s) 27
SfaNI GCATC 2 cut(s) 221, 280
SinI GGWCC 1 cut(s) 409
SphI GCATGC 2 cut(s) 112, 372
Sse9I AATT 2 cut(s) 36, 134
SsiI CCGC 1 cut(s) 216
TaaI ACNGT 3 cut(s) 88, 272, 525
TaiI ACGT 1 cut(s) 96
TasI AATT 2 cut(s) 36, 134
TfiI GAWTC 3 cut(s) 130, 302, 317
Tru1I TTAA 3 cut(s) 65, 153, 252
Tru9I TTAA 3 cut(s) 65, 153, 252
TscAI CASTG 2 cut(s) 110, 411
TseI GCWGC 1 cut(s) 343
TspDTI ATGAA 2 cut(s) 127, 461
TspRI CASTG 2 cut(s) 110, 411
VpaK11BI GGWCC 1 cut(s) 409
XceI RCATGY 4 cut(s) 73, 112, 372, 381
XmiI GTMKAC 1 cut(s) 243
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.