Rh6AG141600

Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0003912
Physical Location & Seq
Reverse (-)
21962856 .. 21967818
4963 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG141600.1

Sequence Viewer

Length: 708 bp
ATGAGAATCGGACGCTCCACTCTGACCAAGCTACGAAGTCTTTCATTGCTTCCTAAAGTCAGGACATGGCTTCTTTCTGTTGATCTTTCTAAGGAAGTACCCCTATGGGTAGCTTCTTTGTTCCAGGCAACCAAGGCTAAGCCAGCCTCACTTTCTCCGCTCTCAGCCGAAATAAAACTACTCCCAAGTCTTCATCATCAGCTTTCTCATCTCCCTCCTCACCTAACTGTCCTACTCCGTCTAAACATGTCAACCATGACAACTGTGAACGTTCCCTCTCAGTGCATGCTCAGAAATGCACCTAAGACTCGATTCACCAGTTCTATCATCAAGTTCTCATCTCCACTTGGATCTGTGAAGACTCTCTCCAAGTCTTTTGGCTTGAAAGCATCTGCCTCTGCCCGAACATCAATGGCAGTATACAAGGTTAAGCTGATTGGGCCAGACGGTGAGGAGAACGAGTTTGACGCTCCAGATGACTCTTACATCTTGGATTCAGCTGAGAACGCAGGAGTTGAGCTGCCCTATTCTTGCAGGGCTGGGGCATGCTCCACCTGTGCAGGAAAGATGGTAGCAGGTGCAGTGGACCAGTCAGATGGTTCCTTCCTTGATGACAAACAAATGAAGGAGGGTTATGTGCTGACCTGTGTCTCGTATCCAACTTCAGACTGTGTGATCCACACTCACAAGGAAAGTGAACTGTATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00195 map00195
Pfam Domains
Protein Families
Fer2

Protein Analysis

235

Amino Acids

25.52

Weight (kDa)

8.85

Isoelectric Point (pI)

43.88

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Fer2 PF00111 148 - 221 7.4e-23 2Fe-2S iron-sulfur cluster binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 566
Acc36I ACCTGC 1 cut(s) 566
AccBSI CCGCTC 1 cut(s) 160
AccI GTMKAC 1 cut(s) 420
AciI CCGC 1 cut(s) 158
AclI AACGTT 1 cut(s) 270
AclWI GGATC 2 cut(s) 358, 670
AcuI CTGAAG 1 cut(s) 648
AfaI GTAC 1 cut(s) 99
AflIII ACRYGT 1 cut(s) 246
AgsI TTSAA 1 cut(s) 385
AjnI CCWGG 1 cut(s) 123
AluBI AGCT 6 cut(s) 31, 113, 202, 433, 500, 520
AluI AGCT 6 cut(s) 31, 113, 202, 433, 500, 520
Alw26I GTCTC 1 cut(s) 655
AlwI GGATC 2 cut(s) 358, 670
AoxI GGCC 1 cut(s) 440
ApeKI GCWGC 1 cut(s) 520
Asp700I GAANNNNTTC 1 cut(s) 40
AspS9I GGNCC 2 cut(s) 440, 586
AsuHPI GGTGA 3 cut(s) 212, 307, 461
AvaII GGWCC 1 cut(s) 586
BbsI GAAGAC 2 cut(s) 182, 365
BbvI GCAGC 1 cut(s) 507
BccI CCATC 2 cut(s) 562, 590
BciT130I CCWGG 1 cut(s) 125
BciVI GTATCC 1 cut(s) 666
BcoDI GTCTC 1 cut(s) 655
BfuAI ACCTGC 1 cut(s) 566
BfuI GTATCC 1 cut(s) 666
BisI GCNGC 1 cut(s) 521
BlpI GCTNAGC 1 cut(s) 138
BlsI GCNGC 1 cut(s) 522
Bme1390I CCNGG 1 cut(s) 125
Bme18I GGWCC 1 cut(s) 586
BmgT120I GGNCC 2 cut(s) 440, 586
BmiI GGNNCC 1 cut(s) 601
BmrFI CCNGG 1 cut(s) 125
BmsI GCATC 1 cut(s) 398
BoxI GACNNNNGTC 1 cut(s) 647
BpiI GAAGAC 2 cut(s) 182, 365
BpmI CTGGAG 1 cut(s) 456
Bpu1102I GCTNAGC 1 cut(s) 138
BsaJI CCNNGG 1 cut(s) 132
BsaXI ACNNNNNCTCC 2 cut(s) 446, 476
Bse1I ACTGG 2 cut(s) 318, 589
Bse3DI GCAATG 1 cut(s) 44
BseBI CCWGG 1 cut(s) 125
BseDI CCNNGG 1 cut(s) 132
BseMI GCAATG 1 cut(s) 44
BseMII CTCAG 4 cut(s) 177, 293, 304, 492
BseNI ACTGG 2 cut(s) 318, 589
BseRI GAGGAG 2 cut(s) 207, 467
BseXI GCAGC 1 cut(s) 507
BseYI CCCAGC 1 cut(s) 539
BsgI GTGCAG 2 cut(s) 579, 600
BshFI GGCC 1 cut(s) 442
BsmAI GTCTC 1 cut(s) 655
BsnI GGCC 1 cut(s) 442
Bsp143I GATC 3 cut(s) 82, 350, 675
Bsp1720I GCTNAGC 1 cut(s) 138
BspACI CCGC 1 cut(s) 158
BspANI GGCC 1 cut(s) 442
BspCNI CTCAG 4 cut(s) 176, 292, 303, 493
BspLI GGNNCC 1 cut(s) 601
BspMI ACCTGC 1 cut(s) 566
BspPI GGATC 2 cut(s) 358, 670
BsrBI CCGCTC 1 cut(s) 160
BsrDI GCAATG 1 cut(s) 44
BsrI ACTGG 2 cut(s) 318, 589
BssECI CCNNGG 1 cut(s) 132
BssMI GATC 3 cut(s) 82, 350, 675
BssNAI GTATAC 1 cut(s) 421
BssT1I CCWWGG 1 cut(s) 132
Bst1107I GTATAC 1 cut(s) 421
Bst2UI CCWGG 1 cut(s) 125
Bst4CI ACNGT 5 cut(s) 229, 265, 449, 671, 702
BstC8I GCNNGC 3 cut(s) 144, 287, 547
BstDEI CTNAG 7 cut(s) 90, 138, 163, 279, 290, 303, 501
BstKTI GATC 3 cut(s) 85, 353, 678
BstMAI GTCTC 1 cut(s) 655
BstMBI GATC 3 cut(s) 82, 350, 675
BstMWI GCNNNNNNNGC 4 cut(s) 134, 143, 439, 506
BstNI CCWGG 1 cut(s) 125
BstNSI RCATGY 3 cut(s) 250, 289, 549
BstPAI GACNNNNGTC 1 cut(s) 647
BstSCI CCNGG 1 cut(s) 123
BstV1I GCAGC 1 cut(s) 507
BstV2I GAAGAC 2 cut(s) 182, 365
BstX2I RGATCY 1 cut(s) 350
BstXI CCANNNNNNTGG 1 cut(s) 596
BstYI RGATCY 1 cut(s) 350
BstZ17I GTATAC 1 cut(s) 421
BsuI GTATCC 1 cut(s) 666
BsuRI GGCC 1 cut(s) 442
BtsI GCAGTG 1 cut(s) 588
BtsIMutI CAGTG 2 cut(s) 287, 588
BveI ACCTGC 1 cut(s) 566
Cac8I GCNNGC 3 cut(s) 144, 287, 547
Cfr13I GGNCC 2 cut(s) 440, 586
CseI GACGC 2 cut(s) 21, 476
Csp6I GTAC 1 cut(s) 98
CviAII CATG 5 cut(s) 66, 247, 256, 286, 546
CviQI GTAC 1 cut(s) 98
DdeI CTNAG 7 cut(s) 90, 138, 163, 279, 290, 303, 501
DpnI GATC 3 cut(s) 84, 352, 677
DpnII GATC 3 cut(s) 82, 350, 675
Eco130I CCWWGG 1 cut(s) 132
Eco47I GGWCC 1 cut(s) 586
Eco57I CTGAAG 1 cut(s) 648
EcoRII CCWGG 1 cut(s) 123
EcoT14I CCWWGG 1 cut(s) 132
ErhI CCWWGG 1 cut(s) 132
FaeI CATG 5 cut(s) 69, 250, 259, 289, 549
FaiI YATR 8 cut(s) 67, 106, 248, 257, 287, 421, 547, 636
FatI CATG 5 cut(s) 65, 246, 255, 285, 545
FblI GTMKAC 1 cut(s) 420
Fnu4HI GCNGC 1 cut(s) 521
Fsp4HI GCNGC 1 cut(s) 521
GluI GCNGC 1 cut(s) 521
GsaI CCCAGC 1 cut(s) 543
GsuI CTGGAG 1 cut(s) 456
HaeIII GGCC 1 cut(s) 442
HgaI GACGC 2 cut(s) 21, 476
Hin1II CATG 5 cut(s) 69, 250, 259, 289, 549
HincII GTYRAC 1 cut(s) 252
HindII GTYRAC 1 cut(s) 252
HinfI GANTC 6 cut(s) 6, 307, 312, 361, 479, 494
HphI GGTGA 3 cut(s) 212, 307, 461
Hpy166II GTNNAC 5 cut(s) 252, 268, 421, 586, 698
Hpy188I TCNGA 5 cut(s) 11, 24, 293, 595, 667
Hpy188III TCNNGA 2 cut(s) 61, 473
Hpy8I GTNNAC 5 cut(s) 252, 268, 421, 586, 698
HpyAV CCTTC 2 cut(s) 613, 619
HpyCH4III ACNGT 5 cut(s) 229, 265, 449, 671, 702
HpyCH4IV ACGT 1 cut(s) 270
HpyCH4V TGCA 5 cut(s) 285, 299, 534, 560, 581
HpyF10VI GCNNNNNNNGC 4 cut(s) 134, 143, 439, 506
HpyF3I CTNAG 7 cut(s) 90, 138, 163, 279, 290, 303, 501
HpySE526I ACGT 1 cut(s) 270
Hsp92II CATG 5 cut(s) 69, 250, 259, 289, 549
Kzo9I GATC 3 cut(s) 82, 350, 675
LmnI GCTCC 3 cut(s) 20, 475, 554
Lsp1109I GCAGC 1 cut(s) 507
LweI GCATC 1 cut(s) 398
MaeII ACGT 1 cut(s) 270
MalI GATC 3 cut(s) 84, 352, 677
MbiI CCGCTC 1 cut(s) 160
MboI GATC 3 cut(s) 82, 350, 675
MboII GAAGA 2 cut(s) 182, 370
MflI RGATCY 1 cut(s) 350
MlyI GAGTC 3 cut(s) 301, 355, 473
MmeI TCCRAC 1 cut(s) 683
MnlI CCTC 7 cut(s) 157, 225, 228, 286, 406, 445, 622
MroXI GAANNNNTTC 1 cut(s) 40
MseI TTAA 1 cut(s) 429
MspA1I CMGCKG 1 cut(s) 500
MspR9I CCNGG 1 cut(s) 125
MvaI CCWGG 1 cut(s) 125
MwoI GCNNNNNNNGC 4 cut(s) 134, 143, 439, 506
NdeII GATC 3 cut(s) 82, 350, 675
NlaIII CATG 5 cut(s) 69, 250, 259, 289, 549
NlaIV GGNNCC 1 cut(s) 601
NspI RCATGY 3 cut(s) 250, 289, 549
PaeI GCATGC 2 cut(s) 289, 549
PaqCI CACCTGC 1 cut(s) 566
PciI ACATGT 1 cut(s) 246
PdmI GAANNNNTTC 1 cut(s) 40
PfeI GAWTC 3 cut(s) 6, 312, 494
PkrI GCNGC 1 cut(s) 522
PleI GAGTC 3 cut(s) 301, 355, 473
PpsI GAGTC 3 cut(s) 301, 355, 473
PscI ACATGT 1 cut(s) 246
PshAI GACNNNNGTC 1 cut(s) 647
Psp1406I AACGTT 1 cut(s) 270
Psp6I CCWGG 1 cut(s) 123
PspFI CCCAGC 1 cut(s) 539
PspGI CCWGG 1 cut(s) 123
PspN4I GGNNCC 1 cut(s) 601
PspPI GGNCC 2 cut(s) 440, 586
PsuI RGATCY 1 cut(s) 350
PvuII CAGCTG 1 cut(s) 500
RsaI GTAC 1 cut(s) 99
RsaNI GTAC 1 cut(s) 98
SaqAI TTAA 1 cut(s) 429
SatI GCNGC 1 cut(s) 521
Sau3AI GATC 3 cut(s) 82, 350, 675
Sau96I GGNCC 2 cut(s) 440, 586
SchI GAGTC 3 cut(s) 301, 355, 473
ScrFI CCNGG 1 cut(s) 125
SfaNI GCATC 1 cut(s) 398
SinI GGWCC 1 cut(s) 586
SphI GCATGC 2 cut(s) 289, 549
SsiI CCGC 1 cut(s) 158
StyD4I CCNGG 1 cut(s) 123
StyI CCWWGG 1 cut(s) 132
TaaI ACNGT 5 cut(s) 229, 265, 449, 671, 702
TaiI ACGT 1 cut(s) 273
TaqI TCGA 1 cut(s) 310
TfiI GAWTC 3 cut(s) 6, 312, 494
Tru1I TTAA 1 cut(s) 429
Tru9I TTAA 1 cut(s) 429
TscAI CASTG 2 cut(s) 287, 588
TseI GCWGC 1 cut(s) 520
TspDTI ATGAA 3 cut(s) 33, 182, 638
TspGWI ACGGA 1 cut(s) 227
TspRI CASTG 2 cut(s) 287, 588
VpaK11BI GGWCC 1 cut(s) 586
XceI RCATGY 3 cut(s) 250, 289, 549
XmiI GTMKAC 1 cut(s) 420
XmnI GAANNNNTTC 1 cut(s) 40
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.