Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0008535.1

Orthogroup ID

OG0003912

Physical Location & Seq

Genomic Coordinates Reverse (-)

42060 .. 45180

Gene Structure 3121 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0008535.1_g000016.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 675 bp

atggtgtggtggaagggccggccgccggagctaacgccactggctggggcggtgatggccaggcaaaggatttgggcttctggttatatagcttgggtttgggcttgggcctttgggcctgggcttaattcgaccgaaataaaactattcccaagtcttcatcatcagctttctcatctccctcctcacctaactgtcctactccgtctaaacatgtcaaccatgacaactgtgaacgttccctctcagtgcatgctcagaaatgcacctaagactcgattcaccagttctatcatcaagttctcatctccacttggatctgtgaagactctctccaagtcttttggcttgaaagcatctgcctctgcccgaacatcaatggcagtatacaaggttaagctgattgggccagacggtgaggagaacgagtttgacgctccagatgactcttacatcttggattcagctgagaacgcaggagttgagctgccctattcttgcagggctggggcatgctccacctgtgcaggaaagatggtagcaggtgcagtggaccagtcagatggttccttccttgatgacaaccaaatgaaggagggttatgtgctgacctgtgtctcgtatccaacttcagactgtgtgatccacactcacaaggaaagtgaactgtattag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00195 map00195

Pfam Domains

Protein Families

Fer2

Protein Analysis

224

Amino Acids

24.47

Weight (kDa)

6.99

Isoelectric Point (pI)

37.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003912)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G27510
fragaria_vesca	FvH4_2g09491 FvH4_3g24910 FvH4_3g24910 FvH4_3g24910
malus_domestica	MD00G1075500.v1.1 MD03G1144300.v1.1
prunus_persica	Prupe.6G130100_v2.0.a1
pyrus_communis	pycom03g09960 pycom11g13660
rosa_chinensis	RchiOBHm_Chr5g0044701 RchiOBHm_Chr6g0265781
rosa_laevigata	RLG00000014160 RLG00000034289
rosa_multiflora	Rmu_sc0000208.1_g000029 Rmu_sc0008535.1_g000016
rosa_roxburghii	Rroxscaffold_175G00432570 Rroxscaffold_1G00036330 Rroxscaffold_7G00202420
rosa_rugosa	Rorug05G0216700 Rorug06G0019100 Rorug06G0019200 Rorug06G0019300 Rorug06G0019400 Rorug06G0019500
rosa_samantha	Rh5AG300100 Rh5CG334000 Rh5DG317000 Rh6AG141600 Rh6BG141500 Rh6CG138100 Rh6DG125100
rosa_wichuraiana	Rw5G027760 Rw6G012240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	533
Acc36I	ACCTGC	1 cut(s)	533
AccB7I	CCANNNNNTGG	1 cut(s)	44
AccI	GTMKAC	1 cut(s)	387
AciI	CCGC	2 cut(s)	23, 50
AclI	AACGTT	1 cut(s)	237
AclWI	GGATC	2 cut(s)	325, 637
AcoI	YGGCCR	2 cut(s)	20, 57
AcuI	CTGAAG	1 cut(s)	615
AfiI	CCNNNNNNNGG	4 cut(s)	25, 44, 66, 592
AflIII	ACRYGT	1 cut(s)	213
AgsI	TTSAA	1 cut(s)	352
AjnI	CCWGG	2 cut(s)	59, 118
AluBI	AGCT	6 cut(s)	31, 92, 169, 400, 467, 487
AluI	AGCT	6 cut(s)	31, 92, 169, 400, 467, 487
Alw26I	GTCTC	1 cut(s)	622
AlwI	GGATC	2 cut(s)	325, 637
AoxI	GGCC	6 cut(s)	16, 20, 57, 108, 116, 407
ApeKI	GCWGC	1 cut(s)	487
AspS9I	GGNCC	5 cut(s)	16, 108, 116, 407, 553
AsuHPI	GGTGA	4 cut(s)	64, 179, 274, 428
AvaII	GGWCC	1 cut(s)	553
BalI	TGGCCA	1 cut(s)	59
BbsI	GAAGAC	2 cut(s)	149, 332
BbvI	GCAGC	1 cut(s)	474
BccI	CCATC	3 cut(s)	49, 529, 557
BciT130I	CCWGG	2 cut(s)	61, 120
BciVI	GTATCC	1 cut(s)	633
BcoDI	GTCTC	1 cut(s)	622
BfuAI	ACCTGC	1 cut(s)	533
BfuI	GTATCC	1 cut(s)	633
BisI	GCNGC	2 cut(s)	23, 488
BlsI	GCNGC	2 cut(s)	24, 489
Bme1390I	CCNGG	2 cut(s)	61, 120
Bme18I	GGWCC	1 cut(s)	553
BmgT120I	GGNCC	5 cut(s)	16, 108, 116, 407, 553
BmiI	GGNNCC	1 cut(s)	568
BmrFI	CCNGG	2 cut(s)	61, 120
BmsI	GCATC	1 cut(s)	365
BoxI	GACNNNNGTC	1 cut(s)	614
BpiI	GAAGAC	2 cut(s)	149, 332
BpmI	CTGGAG	1 cut(s)	423
BsaJI	CCNNGG	1 cut(s)	119
BsaXI	ACNNNNNCTCC	2 cut(s)	413, 443
Bsc4I	CCNNNNNNNGG	4 cut(s)	25, 44, 66, 592
Bse118I	RCCGGY	1 cut(s)	18
Bse1I	ACTGG	3 cut(s)	45, 285, 556
BseBI	CCWGG	2 cut(s)	61, 120
BseDI	CCNNGG	1 cut(s)	119
BseLI	CCNNNNNNNGG	4 cut(s)	25, 44, 66, 592
BseMII	CTCAG	3 cut(s)	260, 271, 459
BseNI	ACTGG	3 cut(s)	45, 285, 556
BseRI	GAGGAG	2 cut(s)	174, 434
BseX3I	CGGCCG	1 cut(s)	20
BseXI	GCAGC	1 cut(s)	474
BseYI	CCCAGC	2 cut(s)	44, 506
BsgI	GTGCAG	2 cut(s)	546, 567
Bsh1285I	CGRYCG	2 cut(s)	23, 135
BshFI	GGCC	6 cut(s)	18, 22, 59, 110, 118, 409
BsiEI	CGRYCG	2 cut(s)	23, 135
BsiSI	CCGG	2 cut(s)	19, 26
BslI	CCNNNNNNNGG	4 cut(s)	25, 44, 66, 592
BsmAI	GTCTC	1 cut(s)	622
BsnI	GGCC	6 cut(s)	18, 22, 59, 110, 118, 409
Bsp143I	GATC	2 cut(s)	317, 642
BspACI	CCGC	2 cut(s)	23, 50
BspANI	GGCC	6 cut(s)	18, 22, 59, 110, 118, 409
BspCNI	CTCAG	3 cut(s)	259, 270, 460
BspLI	GGNNCC	1 cut(s)	568
BspMI	ACCTGC	1 cut(s)	533
BspPI	GGATC	2 cut(s)	325, 637
BsrFI	RCCGGY	1 cut(s)	18
BsrI	ACTGG	3 cut(s)	45, 285, 556
BssAI	RCCGGY	1 cut(s)	18
BssECI	CCNNGG	1 cut(s)	119
BssMI	GATC	2 cut(s)	317, 642
BssNAI	GTATAC	1 cut(s)	388
Bst1107I	GTATAC	1 cut(s)	388
Bst2UI	CCWGG	2 cut(s)	61, 120
Bst4CI	ACNGT	5 cut(s)	196, 232, 416, 638, 669
BstC8I	GCNNGC	3 cut(s)	20, 254, 514
BstDEI	CTNAG	4 cut(s)	246, 257, 270, 468
BstKTI	GATC	2 cut(s)	320, 645
BstMAI	GTCTC	1 cut(s)	622
BstMBI	GATC	2 cut(s)	317, 642
BstMCI	CGRYCG	2 cut(s)	23, 135
BstMWI	GCNNNNNNNGC	4 cut(s)	28, 56, 406, 473
BstNI	CCWGG	2 cut(s)	61, 120
BstNSI	RCATGY	3 cut(s)	217, 256, 516
BstPAI	GACNNNNGTC	1 cut(s)	614
BstSCI	CCNGG	2 cut(s)	59, 118
BstV1I	GCAGC	1 cut(s)	474
BstV2I	GAAGAC	2 cut(s)	149, 332
BstX2I	RGATCY	1 cut(s)	317
BstXI	CCANNNNNNTGG	1 cut(s)	563
BstYI	RGATCY	1 cut(s)	317
BstZ17I	GTATAC	1 cut(s)	388
BstZI	CGGCCG	1 cut(s)	20
BsuI	GTATCC	1 cut(s)	633
BsuRI	GGCC	6 cut(s)	18, 22, 59, 110, 118, 409
BtsI	GCAGTG	1 cut(s)	555
BtsIMutI	CAGTG	3 cut(s)	38, 254, 555
BveI	ACCTGC	1 cut(s)	533
Cac8I	GCNNGC	3 cut(s)	20, 254, 514
Cfr10I	RCCGGY	1 cut(s)	18
Cfr13I	GGNCC	5 cut(s)	16, 108, 116, 407, 553
CseI	GACGC	1 cut(s)	443
CviAII	CATG	4 cut(s)	214, 223, 253, 513
DdeI	CTNAG	4 cut(s)	246, 257, 270, 468
DpnI	GATC	2 cut(s)	319, 644
DpnII	GATC	2 cut(s)	317, 642
EaeI	YGGCCR	2 cut(s)	20, 57
EagI	CGGCCG	1 cut(s)	20
EclXI	CGGCCG	1 cut(s)	20
Eco47I	GGWCC	1 cut(s)	553
Eco52I	CGGCCG	1 cut(s)	20
Eco57I	CTGAAG	1 cut(s)	615
EcoRII	CCWGG	2 cut(s)	59, 118
FaeI	CATG	4 cut(s)	217, 226, 256, 516
FaiI	YATR	8 cut(s)	87, 89, 215, 224, 254, 388, 514, 603
FatI	CATG	4 cut(s)	213, 222, 252, 512
FblI	GTMKAC	1 cut(s)	387
Fnu4HI	GCNGC	2 cut(s)	23, 488
FseI	GGCCGGCC	1 cut(s)	22
Fsp4HI	GCNGC	2 cut(s)	23, 488
GluI	GCNGC	2 cut(s)	23, 488
GsaI	CCCAGC	2 cut(s)	48, 510
GsuI	CTGGAG	1 cut(s)	423
HaeIII	GGCC	6 cut(s)	18, 22, 59, 110, 118, 409
HapII	CCGG	2 cut(s)	19, 26
HgaI	GACGC	1 cut(s)	443
Hin1II	CATG	4 cut(s)	217, 226, 256, 516
HincII	GTYRAC	1 cut(s)	219
HindII	GTYRAC	1 cut(s)	219
HinfI	GANTC	5 cut(s)	274, 279, 328, 446, 461
HpaII	CCGG	2 cut(s)	19, 26
HphI	GGTGA	4 cut(s)	64, 179, 274, 428
Hpy166II	GTNNAC	5 cut(s)	219, 235, 388, 553, 665
Hpy188I	TCNGA	3 cut(s)	260, 562, 634
Hpy188III	TCNNGA	1 cut(s)	440
Hpy8I	GTNNAC	5 cut(s)	219, 235, 388, 553, 665
HpyAV	CCTTC	3 cut(s)	7, 580, 586
HpyCH4III	ACNGT	5 cut(s)	196, 232, 416, 638, 669
HpyCH4IV	ACGT	1 cut(s)	237
HpyCH4V	TGCA	5 cut(s)	252, 266, 501, 527, 548
HpyF10VI	GCNNNNNNNGC	4 cut(s)	28, 56, 406, 473
HpyF3I	CTNAG	4 cut(s)	246, 257, 270, 468
HpySE526I	ACGT	1 cut(s)	237
Hsp92II	CATG	4 cut(s)	217, 226, 256, 516
KroI	GCCGGC	1 cut(s)	18
KroNI	GCCGGC	1 cut(s)	20
Kzo9I	GATC	2 cut(s)	317, 642
LmnI	GCTCC	3 cut(s)	28, 442, 521
Lsp1109I	GCAGC	1 cut(s)	474
LweI	GCATC	1 cut(s)	365
MaeII	ACGT	1 cut(s)	237
MalI	GATC	2 cut(s)	319, 644
MboI	GATC	2 cut(s)	317, 642
MboII	GAAGA	2 cut(s)	149, 337
MflI	RGATCY	1 cut(s)	317
MlsI	TGGCCA	1 cut(s)	59
MluCI	AATT	1 cut(s)	127
MluNI	TGGCCA	1 cut(s)	59
MlyI	GAGTC	3 cut(s)	268, 322, 440
MmeI	TCCRAC	1 cut(s)	650
MnlI	CCTC	6 cut(s)	192, 195, 253, 373, 412, 589
Mox20I	TGGCCA	1 cut(s)	59
MroNI	GCCGGC	1 cut(s)	18
MscI	TGGCCA	1 cut(s)	59
MseI	TTAA	2 cut(s)	126, 396
Msp20I	TGGCCA	1 cut(s)	59
MspA1I	CMGCKG	1 cut(s)	467
MspI	CCGG	2 cut(s)	19, 26
MspR9I	CCNGG	2 cut(s)	61, 120
MvaI	CCWGG	2 cut(s)	61, 120
MwoI	GCNNNNNNNGC	4 cut(s)	28, 56, 406, 473
NaeI	GCCGGC	1 cut(s)	20
NdeII	GATC	2 cut(s)	317, 642
NgoMIV	GCCGGC	1 cut(s)	18
NlaIII	CATG	4 cut(s)	217, 226, 256, 516
NlaIV	GGNNCC	1 cut(s)	568
NspI	RCATGY	3 cut(s)	217, 256, 516
PaeI	GCATGC	2 cut(s)	256, 516
PaqCI	CACCTGC	1 cut(s)	533
PciI	ACATGT	1 cut(s)	213
PdiI	GCCGGC	1 cut(s)	20
PfeI	GAWTC	2 cut(s)	279, 461
PflMI	CCANNNNNTGG	1 cut(s)	44
PkrI	GCNGC	2 cut(s)	24, 489
PleI	GAGTC	3 cut(s)	268, 322, 440
PpsI	GAGTC	3 cut(s)	268, 322, 440
PscI	ACATGT	1 cut(s)	213
PshAI	GACNNNNGTC	1 cut(s)	614
Psp1406I	AACGTT	1 cut(s)	237
Psp6I	CCWGG	2 cut(s)	59, 118
PspFI	CCCAGC	2 cut(s)	44, 506
PspGI	CCWGG	2 cut(s)	59, 118
PspN4I	GGNNCC	1 cut(s)	568
PspPI	GGNCC	5 cut(s)	16, 108, 116, 407, 553
PsuI	RGATCY	1 cut(s)	317
PvuII	CAGCTG	1 cut(s)	467
RigI	GGCCGGCC	1 cut(s)	22
SaqAI	TTAA	2 cut(s)	126, 396
SatI	GCNGC	2 cut(s)	23, 488
Sau3AI	GATC	2 cut(s)	317, 642
Sau96I	GGNCC	5 cut(s)	16, 108, 116, 407, 553
SchI	GAGTC	3 cut(s)	268, 322, 440
ScrFI	CCNGG	2 cut(s)	61, 120
SfaNI	GCATC	1 cut(s)	365
SinI	GGWCC	1 cut(s)	553
SphI	GCATGC	2 cut(s)	256, 516
Sse9I	AATT	1 cut(s)	127
SsiI	CCGC	2 cut(s)	23, 50
StyD4I	CCNGG	2 cut(s)	59, 118
TaaI	ACNGT	5 cut(s)	196, 232, 416, 638, 669
TaiI	ACGT	1 cut(s)	240
TaqI	TCGA	2 cut(s)	131, 277
TaqII	GACCGA	1 cut(s)	149
TasI	AATT	1 cut(s)	127
TauI	GCSGC	1 cut(s)	25
TfiI	GAWTC	2 cut(s)	279, 461
Tru1I	TTAA	2 cut(s)	126, 396
Tru9I	TTAA	2 cut(s)	126, 396
TscAI	CASTG	3 cut(s)	45, 254, 555
TseI	GCWGC	1 cut(s)	487
TspDTI	ATGAA	2 cut(s)	149, 605
TspGWI	ACGGA	1 cut(s)	194
TspRI	CASTG	3 cut(s)	45, 254, 555
Van91I	CCANNNNNTGG	1 cut(s)	44
VpaK11BI	GGWCC	1 cut(s)	553
XceI	RCATGY	3 cut(s)	217, 256, 516
XmiI	GTMKAC	1 cut(s)	387

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.