Rh6CG138100

Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0003912
Physical Location & Seq
Reverse (-)
17747595 .. 17751673
4079 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG138100.1

Sequence Viewer

Length: 480 bp
ATGGATTCAGGTCTAAACATGTCAACCATGACAACTGTGAACGTTCCCTCTCAGTGCATGCTCAGAAATGCACCTAAGACTCGATTCACCAGTTCTATCATCAAGTTCTCATCTCCACTTGGATCTGTGAAGACTCTCTCCAAGTCTTTTGGCTTGAAAGCATCTGCCTCTGCCCGAACATCAATGACAGTATACAAGGTTAAGCTGATTGGGCCAGACGGTGAGGAGAACGAGTTTGACGCTCCAGATGACTCTTACATCTTGGATTCAGCTGAGAACGCAGGAGTTGAGCTGCCCTATTCTTGCAGGGCTGGGGCATGCTCCACCTGTGCAGGAAAGATGGTAGCAGGTGCAGTGGACCAGTCGGATGGTTCCTTCCTTGATGACAACCAAATGAAGGAGGGTTATGTGCTGACCTGTGTCTCGTATCCAACTTCAGACTGTGTGATCCACACTCACAAGGAAAGTGAACTGTATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00195 map00195
Pfam Domains
Protein Families
Fer2

Protein Analysis

159

Amino Acids

17.01

Weight (kDa)

4.95

Isoelectric Point (pI)

41.75

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Fer2 PF00111 72 - 145 4.8e-23 2Fe-2S iron-sulfur cluster binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 338
Acc36I ACCTGC 1 cut(s) 338
AccI GTMKAC 1 cut(s) 192
AclI AACGTT 1 cut(s) 42
AclWI GGATC 2 cut(s) 130, 442
AcuI CTGAAG 1 cut(s) 420
AfiI CCNNNNNNNGG 1 cut(s) 397
AflIII ACRYGT 1 cut(s) 18
AgsI TTSAA 1 cut(s) 157
AluBI AGCT 3 cut(s) 205, 272, 292
AluI AGCT 3 cut(s) 205, 272, 292
Alw26I GTCTC 1 cut(s) 427
AlwI GGATC 2 cut(s) 130, 442
AoxI GGCC 1 cut(s) 212
ApeKI GCWGC 1 cut(s) 292
AspS9I GGNCC 2 cut(s) 212, 358
AsuHPI GGTGA 2 cut(s) 79, 233
AvaII GGWCC 1 cut(s) 358
BbsI GAAGAC 1 cut(s) 137
BbvI GCAGC 1 cut(s) 279
BccI CCATC 2 cut(s) 334, 362
BciVI GTATCC 1 cut(s) 438
BcoDI GTCTC 1 cut(s) 427
BfuAI ACCTGC 1 cut(s) 338
BfuI GTATCC 1 cut(s) 438
BisI GCNGC 1 cut(s) 293
BlsI GCNGC 1 cut(s) 294
Bme18I GGWCC 1 cut(s) 358
BmgT120I GGNCC 2 cut(s) 212, 358
BmiI GGNNCC 1 cut(s) 373
BmsI GCATC 1 cut(s) 170
BoxI GACNNNNGTC 1 cut(s) 419
BpiI GAAGAC 1 cut(s) 137
BpmI CTGGAG 1 cut(s) 228
BsaXI ACNNNNNCTCC 2 cut(s) 218, 248
Bsc4I CCNNNNNNNGG 1 cut(s) 397
Bse1I ACTGG 2 cut(s) 90, 361
BseGI GGATG 1 cut(s) 373
BseLI CCNNNNNNNGG 1 cut(s) 397
BseMII CTCAG 3 cut(s) 65, 76, 264
BseNI ACTGG 2 cut(s) 90, 361
BseRI GAGGAG 1 cut(s) 239
BseXI GCAGC 1 cut(s) 279
BseYI CCCAGC 1 cut(s) 311
BsgI GTGCAG 2 cut(s) 351, 372
BshFI GGCC 1 cut(s) 214
BslI CCNNNNNNNGG 1 cut(s) 397
BsmAI GTCTC 1 cut(s) 427
BsnI GGCC 1 cut(s) 214
Bsp143I GATC 2 cut(s) 122, 447
BspANI GGCC 1 cut(s) 214
BspCNI CTCAG 3 cut(s) 64, 75, 265
BspLI GGNNCC 1 cut(s) 373
BspMI ACCTGC 1 cut(s) 338
BspPI GGATC 2 cut(s) 130, 442
BsrI ACTGG 2 cut(s) 90, 361
BssMI GATC 2 cut(s) 122, 447
BssNAI GTATAC 1 cut(s) 193
Bst1107I GTATAC 1 cut(s) 193
Bst4CI ACNGT 5 cut(s) 37, 190, 221, 443, 474
BstC8I GCNNGC 2 cut(s) 59, 319
BstDEI CTNAG 4 cut(s) 51, 62, 75, 273
BstF5I GGATG 1 cut(s) 373
BstKTI GATC 2 cut(s) 125, 450
BstMAI GTCTC 1 cut(s) 427
BstMBI GATC 2 cut(s) 122, 447
BstMWI GCNNNNNNNGC 2 cut(s) 211, 278
BstNSI RCATGY 3 cut(s) 22, 61, 321
BstPAI GACNNNNGTC 1 cut(s) 419
BstV1I GCAGC 1 cut(s) 279
BstV2I GAAGAC 1 cut(s) 137
BstX2I RGATCY 1 cut(s) 122
BstXI CCANNNNNNTGG 1 cut(s) 368
BstYI RGATCY 1 cut(s) 122
BstZ17I GTATAC 1 cut(s) 193
BsuI GTATCC 1 cut(s) 438
BsuRI GGCC 1 cut(s) 214
BtsCI GGATG 1 cut(s) 373
BtsI GCAGTG 1 cut(s) 360
BtsIMutI CAGTG 2 cut(s) 59, 360
BveI ACCTGC 1 cut(s) 338
Cac8I GCNNGC 2 cut(s) 59, 319
Cfr13I GGNCC 2 cut(s) 212, 358
CseI GACGC 1 cut(s) 248
CviAII CATG 4 cut(s) 19, 28, 58, 318
CviJI RGCY 6 cut(s) 153, 205, 214, 272, 292, 311
CviKI_1 RGCY 6 cut(s) 153, 205, 214, 272, 292, 311
DdeI CTNAG 4 cut(s) 51, 62, 75, 273
DpnI GATC 2 cut(s) 124, 449
DpnII GATC 2 cut(s) 122, 447
Eco47I GGWCC 1 cut(s) 358
Eco57I CTGAAG 1 cut(s) 420
FaeI CATG 4 cut(s) 22, 31, 61, 321
FaiI YATR 6 cut(s) 20, 29, 59, 193, 319, 408
FatI CATG 4 cut(s) 18, 27, 57, 317
FblI GTMKAC 1 cut(s) 192
Fnu4HI GCNGC 1 cut(s) 293
FokI GGATG 1 cut(s) 380
Fsp4HI GCNGC 1 cut(s) 293
GluI GCNGC 1 cut(s) 293
GsaI CCCAGC 1 cut(s) 315
GsuI CTGGAG 1 cut(s) 228
HaeIII GGCC 1 cut(s) 214
HgaI GACGC 1 cut(s) 248
Hin1II CATG 4 cut(s) 22, 31, 61, 321
HincII GTYRAC 1 cut(s) 24
HindII GTYRAC 1 cut(s) 24
HinfI GANTC 6 cut(s) 5, 79, 84, 133, 251, 266
HphI GGTGA 2 cut(s) 79, 233
Hpy166II GTNNAC 5 cut(s) 24, 40, 193, 358, 470
Hpy188I TCNGA 3 cut(s) 65, 367, 439
Hpy188III TCNNGA 1 cut(s) 245
Hpy8I GTNNAC 5 cut(s) 24, 40, 193, 358, 470
HpyAV CCTTC 2 cut(s) 385, 391
HpyCH4III ACNGT 5 cut(s) 37, 190, 221, 443, 474
HpyCH4IV ACGT 1 cut(s) 42
HpyCH4V TGCA 5 cut(s) 57, 71, 306, 332, 353
HpyF10VI GCNNNNNNNGC 2 cut(s) 211, 278
HpyF3I CTNAG 4 cut(s) 51, 62, 75, 273
HpySE526I ACGT 1 cut(s) 42
Hsp92II CATG 4 cut(s) 22, 31, 61, 321
Kzo9I GATC 2 cut(s) 122, 447
LmnI GCTCC 2 cut(s) 247, 326
Lsp1109I GCAGC 1 cut(s) 279
LweI GCATC 1 cut(s) 170
MaeII ACGT 1 cut(s) 42
MalI GATC 2 cut(s) 124, 449
MboI GATC 2 cut(s) 122, 447
MboII GAAGA 1 cut(s) 142
MflI RGATCY 1 cut(s) 122
MlyI GAGTC 3 cut(s) 73, 127, 245
MmeI TCCRAC 2 cut(s) 345, 455
MnlI CCTC 4 cut(s) 58, 178, 217, 394
MseI TTAA 1 cut(s) 201
MspA1I CMGCKG 1 cut(s) 272
MwoI GCNNNNNNNGC 2 cut(s) 211, 278
NdeII GATC 2 cut(s) 122, 447
NlaIII CATG 4 cut(s) 22, 31, 61, 321
NlaIV GGNNCC 1 cut(s) 373
NspI RCATGY 3 cut(s) 22, 61, 321
PaeI GCATGC 2 cut(s) 61, 321
PaqCI CACCTGC 1 cut(s) 338
PciI ACATGT 1 cut(s) 18
PfeI GAWTC 3 cut(s) 5, 84, 266
PkrI GCNGC 1 cut(s) 294
PleI GAGTC 3 cut(s) 73, 127, 245
PpsI GAGTC 3 cut(s) 73, 127, 245
PscI ACATGT 1 cut(s) 18
PshAI GACNNNNGTC 1 cut(s) 419
Psp1406I AACGTT 1 cut(s) 42
PspFI CCCAGC 1 cut(s) 311
PspN4I GGNNCC 1 cut(s) 373
PspPI GGNCC 2 cut(s) 212, 358
PsuI RGATCY 1 cut(s) 122
PvuII CAGCTG 1 cut(s) 272
SaqAI TTAA 1 cut(s) 201
SatI GCNGC 1 cut(s) 293
Sau3AI GATC 2 cut(s) 122, 447
Sau96I GGNCC 2 cut(s) 212, 358
SchI GAGTC 3 cut(s) 73, 127, 245
SfaNI GCATC 1 cut(s) 170
SinI GGWCC 1 cut(s) 358
SphI GCATGC 2 cut(s) 61, 321
TaaI ACNGT 5 cut(s) 37, 190, 221, 443, 474
TaiI ACGT 1 cut(s) 45
TaqI TCGA 1 cut(s) 82
TfiI GAWTC 3 cut(s) 5, 84, 266
Tru1I TTAA 1 cut(s) 201
Tru9I TTAA 1 cut(s) 201
TscAI CASTG 2 cut(s) 59, 360
TseI GCWGC 1 cut(s) 292
TspDTI ATGAA 1 cut(s) 410
TspRI CASTG 2 cut(s) 59, 360
VpaK11BI GGWCC 1 cut(s) 358
XceI RCATGY 3 cut(s) 22, 61, 321
XmiI GTMKAC 1 cut(s) 192
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.