Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000208.1

Orthogroup ID

OG0003912

Physical Location & Seq

Genomic Coordinates Reverse (-)

85742 .. 88876

Gene Structure 3135 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000208.1_g000029.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 621 bp

atggccaggcaaaggatttgggcttctggttctatagcttgggtttgggcttgggcctttgggcctgggcttaattcgaccgaaataaaactactcccaagtcttcatcatcagctttctcatctccctcctcacctaactgtcctactccgtctaaacatgtcaaccatgacaactgtgaacgttccctctcagtgcatgctcagaaatgcacctaagactcgattcaccagttctatcatcaagttctcatctccacttggatctgtgaagactctctccaagtcttttggcttgaaagcatctgcctctgcccgaacatcgatggcagtatacaaggttaagctgattgggccagacggtgaggagaacgagtttgacgctccagatgactcttacatcttggattcagctgagaacgcaggagttgagctgccctattcttgcagggctggggcatgctccacctgtgcaggaaagatggtagcaggtgcagtggaccagtcagatggttccttccttgatgacaaccaaatgaaggagggttatgtgctgacctgtgtctcgtatccaacttcagactgtgtgatccatactcacaaggaaagtgaactgtattag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00195 map00195

Pfam Domains

Protein Families

Fer2

Protein Analysis

206

Amino Acids

22.37

Weight (kDa)

6.58

Isoelectric Point (pI)

38.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003912)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G27510
fragaria_vesca	FvH4_2g09491 FvH4_3g24910 FvH4_3g24910 FvH4_3g24910
malus_domestica	MD00G1075500.v1.1 MD03G1144300.v1.1
prunus_persica	Prupe.6G130100_v2.0.a1
pyrus_communis	pycom03g09960 pycom11g13660
rosa_chinensis	RchiOBHm_Chr5g0044701 RchiOBHm_Chr6g0265781
rosa_laevigata	RLG00000014160 RLG00000034289
rosa_multiflora	Rmu_sc0000208.1_g000029 Rmu_sc0008535.1_g000016
rosa_roxburghii	Rroxscaffold_175G00432570 Rroxscaffold_1G00036330 Rroxscaffold_7G00202420
rosa_rugosa	Rorug05G0216700 Rorug06G0019100 Rorug06G0019200 Rorug06G0019300 Rorug06G0019400 Rorug06G0019500
rosa_samantha	Rh5AG300100 Rh5CG334000 Rh5DG317000 Rh6AG141600 Rh6BG141500 Rh6CG138100 Rh6DG125100
rosa_wichuraiana	Rw5G027760 Rw6G012240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	479
Acc36I	ACCTGC	1 cut(s)	479
AccI	GTMKAC	1 cut(s)	333
AclI	AACGTT	1 cut(s)	183
AclWI	GGATC	2 cut(s)	271, 583
AcoI	YGGCCR	1 cut(s)	3
AcuI	CTGAAG	1 cut(s)	561
AfiI	CCNNNNNNNGG	2 cut(s)	12, 538
AflIII	ACRYGT	1 cut(s)	159
AgsI	TTSAA	1 cut(s)	298
AjnI	CCWGG	2 cut(s)	5, 64
AluBI	AGCT	5 cut(s)	38, 115, 346, 413, 433
AluI	AGCT	5 cut(s)	38, 115, 346, 413, 433
Alw26I	GTCTC	1 cut(s)	568
AlwI	GGATC	2 cut(s)	271, 583
AoxI	GGCC	4 cut(s)	3, 54, 62, 353
ApeKI	GCWGC	1 cut(s)	433
AspS9I	GGNCC	4 cut(s)	54, 62, 353, 499
AsuHPI	GGTGA	3 cut(s)	125, 220, 374
AvaII	GGWCC	1 cut(s)	499
BalI	TGGCCA	1 cut(s)	5
BbsI	GAAGAC	2 cut(s)	95, 278
BbvI	GCAGC	1 cut(s)	420
BccI	CCATC	3 cut(s)	319, 475, 503
BciT130I	CCWGG	2 cut(s)	7, 66
BciVI	GTATCC	1 cut(s)	579
BcoDI	GTCTC	1 cut(s)	568
BfmI	CTRYAG	1 cut(s)	33
BfuAI	ACCTGC	1 cut(s)	479
BfuI	GTATCC	1 cut(s)	579
BisI	GCNGC	1 cut(s)	434
BlsI	GCNGC	1 cut(s)	435
Bme1390I	CCNGG	2 cut(s)	7, 66
Bme18I	GGWCC	1 cut(s)	499
BmgT120I	GGNCC	4 cut(s)	54, 62, 353, 499
BmiI	GGNNCC	1 cut(s)	514
BmrFI	CCNGG	2 cut(s)	7, 66
BmsI	GCATC	1 cut(s)	311
BoxI	GACNNNNGTC	1 cut(s)	560
BpiI	GAAGAC	2 cut(s)	95, 278
BpmI	CTGGAG	1 cut(s)	369
Bsa29I	ATCGAT	1 cut(s)	323
BsaJI	CCNNGG	1 cut(s)	65
BsaXI	ACNNNNNCTCC	2 cut(s)	359, 389
Bsc4I	CCNNNNNNNGG	2 cut(s)	12, 538
Bse1I	ACTGG	2 cut(s)	231, 502
BseBI	CCWGG	2 cut(s)	7, 66
BseCI	ATCGAT	1 cut(s)	323
BseDI	CCNNGG	1 cut(s)	65
BseLI	CCNNNNNNNGG	2 cut(s)	12, 538
BseMII	CTCAG	3 cut(s)	206, 217, 405
BseNI	ACTGG	2 cut(s)	231, 502
BseRI	GAGGAG	2 cut(s)	120, 380
BseXI	GCAGC	1 cut(s)	420
BseYI	CCCAGC	1 cut(s)	452
BsgI	GTGCAG	2 cut(s)	492, 513
Bsh1285I	CGRYCG	1 cut(s)	81
BshFI	GGCC	4 cut(s)	5, 56, 64, 355
BshVI	ATCGAT	1 cut(s)	323
BsiEI	CGRYCG	1 cut(s)	81
BslI	CCNNNNNNNGG	2 cut(s)	12, 538
BsmAI	GTCTC	1 cut(s)	568
BsnI	GGCC	4 cut(s)	5, 56, 64, 355
Bsp143I	GATC	2 cut(s)	263, 588
BspANI	GGCC	4 cut(s)	5, 56, 64, 355
BspCNI	CTCAG	3 cut(s)	205, 216, 406
BspDI	ATCGAT	1 cut(s)	323
BspLI	GGNNCC	1 cut(s)	514
BspMI	ACCTGC	1 cut(s)	479
BspPI	GGATC	2 cut(s)	271, 583
BsrI	ACTGG	2 cut(s)	231, 502
BssECI	CCNNGG	1 cut(s)	65
BssMI	GATC	2 cut(s)	263, 588
BssNAI	GTATAC	1 cut(s)	334
Bst1107I	GTATAC	1 cut(s)	334
Bst2UI	CCWGG	2 cut(s)	7, 66
Bst4CI	ACNGT	5 cut(s)	142, 178, 362, 584, 615
BstC8I	GCNNGC	2 cut(s)	200, 460
BstDEI	CTNAG	4 cut(s)	192, 203, 216, 414
BstKTI	GATC	2 cut(s)	266, 591
BstMAI	GTCTC	1 cut(s)	568
BstMBI	GATC	2 cut(s)	263, 588
BstMCI	CGRYCG	1 cut(s)	81
BstMWI	GCNNNNNNNGC	2 cut(s)	352, 419
BstNI	CCWGG	2 cut(s)	7, 66
BstNSI	RCATGY	3 cut(s)	163, 202, 462
BstPAI	GACNNNNGTC	1 cut(s)	560
BstSCI	CCNGG	2 cut(s)	5, 64
BstSFI	CTRYAG	1 cut(s)	33
BstV1I	GCAGC	1 cut(s)	420
BstV2I	GAAGAC	2 cut(s)	95, 278
BstX2I	RGATCY	1 cut(s)	263
BstXI	CCANNNNNNTGG	1 cut(s)	509
BstYI	RGATCY	1 cut(s)	263
BstZ17I	GTATAC	1 cut(s)	334
Bsu15I	ATCGAT	1 cut(s)	323
BsuI	GTATCC	1 cut(s)	579
BsuRI	GGCC	4 cut(s)	5, 56, 64, 355
BsuTUI	ATCGAT	1 cut(s)	323
BtsI	GCAGTG	1 cut(s)	501
BtsIMutI	CAGTG	2 cut(s)	200, 501
BveI	ACCTGC	1 cut(s)	479
Cac8I	GCNNGC	2 cut(s)	200, 460
Cfr13I	GGNCC	4 cut(s)	54, 62, 353, 499
ClaI	ATCGAT	1 cut(s)	323
CseI	GACGC	1 cut(s)	389
CviAII	CATG	4 cut(s)	160, 169, 199, 459
DdeI	CTNAG	4 cut(s)	192, 203, 216, 414
DpnI	GATC	2 cut(s)	265, 590
DpnII	GATC	2 cut(s)	263, 588
EaeI	YGGCCR	1 cut(s)	3
Eco47I	GGWCC	1 cut(s)	499
Eco57I	CTGAAG	1 cut(s)	561
EcoRII	CCWGG	2 cut(s)	5, 64
FaeI	CATG	4 cut(s)	163, 172, 202, 462
FaiI	YATR	8 cut(s)	35, 161, 170, 200, 334, 460, 549, 594
FatI	CATG	4 cut(s)	159, 168, 198, 458
FblI	GTMKAC	1 cut(s)	333
Fnu4HI	GCNGC	1 cut(s)	434
Fsp4HI	GCNGC	1 cut(s)	434
GluI	GCNGC	1 cut(s)	434
GsaI	CCCAGC	1 cut(s)	456
GsuI	CTGGAG	1 cut(s)	369
HaeIII	GGCC	4 cut(s)	5, 56, 64, 355
HgaI	GACGC	1 cut(s)	389
Hin1II	CATG	4 cut(s)	163, 172, 202, 462
HincII	GTYRAC	1 cut(s)	165
HindII	GTYRAC	1 cut(s)	165
HinfI	GANTC	5 cut(s)	220, 225, 274, 392, 407
HphI	GGTGA	3 cut(s)	125, 220, 374
Hpy166II	GTNNAC	5 cut(s)	165, 181, 334, 499, 611
Hpy188I	TCNGA	3 cut(s)	206, 508, 580
Hpy188III	TCNNGA	1 cut(s)	386
Hpy8I	GTNNAC	5 cut(s)	165, 181, 334, 499, 611
HpyAV	CCTTC	2 cut(s)	526, 532
HpyCH4III	ACNGT	5 cut(s)	142, 178, 362, 584, 615
HpyCH4IV	ACGT	1 cut(s)	183
HpyCH4V	TGCA	5 cut(s)	198, 212, 447, 473, 494
HpyF10VI	GCNNNNNNNGC	2 cut(s)	352, 419
HpyF3I	CTNAG	4 cut(s)	192, 203, 216, 414
HpySE526I	ACGT	1 cut(s)	183
Hsp92II	CATG	4 cut(s)	163, 172, 202, 462
Kzo9I	GATC	2 cut(s)	263, 588
LmnI	GCTCC	2 cut(s)	388, 467
Lsp1109I	GCAGC	1 cut(s)	420
LweI	GCATC	1 cut(s)	311
MaeII	ACGT	1 cut(s)	183
MalI	GATC	2 cut(s)	265, 590
MboI	GATC	2 cut(s)	263, 588
MboII	GAAGA	2 cut(s)	95, 283
MflI	RGATCY	1 cut(s)	263
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	1 cut(s)	73
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	3 cut(s)	214, 268, 386
MmeI	TCCRAC	1 cut(s)	596
MnlI	CCTC	6 cut(s)	138, 141, 199, 319, 358, 535
Mox20I	TGGCCA	1 cut(s)	5
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	2 cut(s)	72, 342
Msp20I	TGGCCA	1 cut(s)	5
MspA1I	CMGCKG	1 cut(s)	413
MspR9I	CCNGG	2 cut(s)	7, 66
MvaI	CCWGG	2 cut(s)	7, 66
MwoI	GCNNNNNNNGC	2 cut(s)	352, 419
NdeII	GATC	2 cut(s)	263, 588
NlaIII	CATG	4 cut(s)	163, 172, 202, 462
NlaIV	GGNNCC	1 cut(s)	514
NspI	RCATGY	3 cut(s)	163, 202, 462
PaeI	GCATGC	2 cut(s)	202, 462
PaqCI	CACCTGC	1 cut(s)	479
PciI	ACATGT	1 cut(s)	159
PfeI	GAWTC	2 cut(s)	225, 407
PkrI	GCNGC	1 cut(s)	435
PleI	GAGTC	3 cut(s)	214, 268, 386
PpsI	GAGTC	3 cut(s)	214, 268, 386
PscI	ACATGT	1 cut(s)	159
PshAI	GACNNNNGTC	1 cut(s)	560
Psp1406I	AACGTT	1 cut(s)	183
Psp6I	CCWGG	2 cut(s)	5, 64
PspFI	CCCAGC	1 cut(s)	452
PspGI	CCWGG	2 cut(s)	5, 64
PspN4I	GGNNCC	1 cut(s)	514
PspPI	GGNCC	4 cut(s)	54, 62, 353, 499
PsuI	RGATCY	1 cut(s)	263
PvuII	CAGCTG	1 cut(s)	413
SaqAI	TTAA	2 cut(s)	72, 342
SatI	GCNGC	1 cut(s)	434
Sau3AI	GATC	2 cut(s)	263, 588
Sau96I	GGNCC	4 cut(s)	54, 62, 353, 499
SchI	GAGTC	3 cut(s)	214, 268, 386
ScrFI	CCNGG	2 cut(s)	7, 66
SfaNI	GCATC	1 cut(s)	311
SfcI	CTRYAG	1 cut(s)	33
SinI	GGWCC	1 cut(s)	499
SphI	GCATGC	2 cut(s)	202, 462
Sse9I	AATT	1 cut(s)	73
StyD4I	CCNGG	2 cut(s)	5, 64
TaaI	ACNGT	5 cut(s)	142, 178, 362, 584, 615
TaiI	ACGT	1 cut(s)	186
TaqI	TCGA	3 cut(s)	77, 223, 323
TaqII	GACCGA	1 cut(s)	95
TasI	AATT	1 cut(s)	73
TfiI	GAWTC	2 cut(s)	225, 407
Tru1I	TTAA	2 cut(s)	72, 342
Tru9I	TTAA	2 cut(s)	72, 342
TscAI	CASTG	2 cut(s)	200, 501
TseI	GCWGC	1 cut(s)	433
TspDTI	ATGAA	2 cut(s)	95, 551
TspGWI	ACGGA	1 cut(s)	140
TspRI	CASTG	2 cut(s)	200, 501
VpaK11BI	GGWCC	1 cut(s)	499
XceI	RCATGY	3 cut(s)	163, 202, 462
XmiI	GTMKAC	1 cut(s)	333

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.