Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0003912

Physical Location & Seq

Genomic Coordinates Forward (+)

10109667 .. 10112893

Gene Structure 3227 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G130100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 462 bp

ATGTCAACCATGACAACTGTGCAAATTCCATCCCAATGCATGTTCAGACATGCACCCCAGAATCGTTTCACCAGTTCTATCGTTAAGTTATCATCTCCTCTTGGATCTGTGAAGAATATCTCCAAGGCCTTTGGCTTGAAAGCATCCTCCAACTTCCGAGCATCAATGGCAGTATACAAGGTCAAGCTGGTTGGACCAGACGGTGCGGAGTGCGAGTTTGATGCTCCAGATGATGCGTACATCTTAGATTCAGCTGAGAATGCAGGAGTTGAGTTGCCATATTCTTGCAGGGCTGGGGCCTGCTCTACCTGTGCAGGGAAGCTGGTGGCAGGTTCAGTGGACCAGTCCGATGGCTCGTTCCTCGATGACAATCAAATGAAGGAGGGTTATGTGCTGACCTGTGTCGCATACCCGACTTCAGATGCTGTGATTCACACTCACAAGGAAAGTGAGCTATATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00195 map00195

Pfam Domains

Protein Families

Fer2

Protein Analysis

154

Amino Acids

16.35

Weight (kDa)

5.27

Isoelectric Point (pI)

41.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003912)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G27510
fragaria_vesca	FvH4_2g09491 FvH4_3g24910 FvH4_3g24910 FvH4_3g24910
malus_domestica	MD00G1075500.v1.1 MD03G1144300.v1.1
prunus_persica	Prupe.6G130100_v2.0.a1
pyrus_communis	pycom03g09960 pycom11g13660
rosa_chinensis	RchiOBHm_Chr5g0044701 RchiOBHm_Chr6g0265781
rosa_laevigata	RLG00000014160 RLG00000034289
rosa_multiflora	Rmu_sc0000208.1_g000029 Rmu_sc0008535.1_g000016
rosa_roxburghii	Rroxscaffold_175G00432570 Rroxscaffold_1G00036330 Rroxscaffold_7G00202420
rosa_rugosa	Rorug05G0216700 Rorug06G0019100 Rorug06G0019200 Rorug06G0019300 Rorug06G0019400 Rorug06G0019500
rosa_samantha	Rh5AG300100 Rh5CG334000 Rh5DG317000 Rh6AG141600 Rh6BG141500 Rh6CG138100 Rh6DG125100
rosa_wichuraiana	Rw5G027760 Rw6G012240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	320
AccI	GTMKAC	1 cut(s)	174
AciI	CCGC	1 cut(s)	206
AclWI	GGATC	1 cut(s)	112
AcsI	RAATTY	1 cut(s)	24
AcuI	CTGAAG	1 cut(s)	402
AfaI	GTAC	1 cut(s)	239
AfiI	CCNNNNNNNGG	1 cut(s)	315
AgsI	TTSAA	1 cut(s)	139
AluBI	AGCT	4 cut(s)	187, 254, 322, 454
AluI	AGCT	4 cut(s)	187, 254, 322, 454
AlwI	GGATC	1 cut(s)	112
AlwNI	CAGNNNCTG	1 cut(s)	425
AoxI	GGCC	2 cut(s)	126, 297
ApoI	RAATTY	1 cut(s)	24
Asp700I	GAANNNNTTC	1 cut(s)	65
AspS9I	GGNCC	3 cut(s)	194, 297, 340
AsuHPI	GGTGA	1 cut(s)	61
AvaII	GGWCC	2 cut(s)	194, 340
BccI	CCATC	2 cut(s)	37, 344
BcgI	CGANNNNNNTGC	2 cut(s)	203, 237
BfuAI	ACCTGC	1 cut(s)	320
Bme18I	GGWCC	2 cut(s)	194, 340
BmgT120I	GGNCC	3 cut(s)	194, 297, 340
BmiI	GGNNCC	1 cut(s)	298
BmsI	GCATC	5 cut(s)	152, 170, 211, 223, 412
BoxI	GACNNNNGTC	1 cut(s)	401
BpmI	CTGGAG	1 cut(s)	210
BsaBI	GATNNNNATC	1 cut(s)	369
BsaJI	CCNNGG	1 cut(s)	123
BsaXI	ACNNNNNCTCC	2 cut(s)	200, 230
Bsc4I	CCNNNNNNNGG	1 cut(s)	315
Bse1I	ACTGG	2 cut(s)	72, 343
Bse8I	GATNNNNATC	1 cut(s)	369
BseDI	CCNNGG	1 cut(s)	123
BseGI	GGATG	2 cut(s)	29, 143
BseJI	GATNNNNATC	1 cut(s)	369
BseLI	CCNNNNNNNGG	1 cut(s)	315
BseMII	CTCAG	1 cut(s)	246
BseNI	ACTGG	2 cut(s)	72, 343
BseRI	GAGGAG	1 cut(s)	87
BseYI	CCCAGC	1 cut(s)	293
BsgI	GTGCAG	1 cut(s)	333
BshFI	GGCC	2 cut(s)	128, 299
BslI	CCNNNNNNNGG	1 cut(s)	315
BsmI	GAATGC	1 cut(s)	265
BsnI	GGCC	2 cut(s)	128, 299
Bsp143I	GATC	1 cut(s)	104
BspACI	CCGC	1 cut(s)	206
BspANI	GGCC	2 cut(s)	128, 299
BspCNI	CTCAG	1 cut(s)	247
BspLI	GGNNCC	1 cut(s)	298
BspMI	ACCTGC	1 cut(s)	320
BspPI	GGATC	1 cut(s)	112
BsrI	ACTGG	2 cut(s)	72, 343
BssECI	CCNNGG	1 cut(s)	123
BssMI	GATC	1 cut(s)	104
BssNAI	GTATAC	1 cut(s)	175
BssT1I	CCWWGG	1 cut(s)	123
Bst1107I	GTATAC	1 cut(s)	175
Bst4CI	ACNGT	2 cut(s)	19, 203
BstC8I	GCNNGC	1 cut(s)	301
BstDEI	CTNAG	2 cut(s)	244, 255
BstF5I	GGATG	2 cut(s)	29, 143
BstKTI	GATC	1 cut(s)	107
BstMBI	GATC	1 cut(s)	104
BstMWI	GCNNNNNNNGC	2 cut(s)	167, 260
BstNSI	RCATGY	2 cut(s)	43, 53
BstPAI	GACNNNNGTC	1 cut(s)	401
BstX2I	RGATCY	1 cut(s)	104
BstXI	CCANNNNNNTGG	1 cut(s)	350
BstYI	RGATCY	1 cut(s)	104
BstZ17I	GTATAC	1 cut(s)	175
BsuRI	GGCC	2 cut(s)	128, 299
BtsCI	GGATG	2 cut(s)	29, 143
BtsIMutI	CAGTG	1 cut(s)	342
BveI	ACCTGC	1 cut(s)	320
Cac8I	GCNNGC	1 cut(s)	301
CaiI	CAGNNNCTG	1 cut(s)	425
Cfr13I	GGNCC	3 cut(s)	194, 297, 340
Csp6I	GTAC	1 cut(s)	238
CviAII	CATG	3 cut(s)	10, 40, 50
CviJI	RGCY	9 cut(s)	128, 135, 187, 254, 293, 299, 322, 354, 454
CviKI_1	RGCY	9 cut(s)	128, 135, 187, 254, 293, 299, 322, 354, 454
CviQI	GTAC	1 cut(s)	238
DdeI	CTNAG	2 cut(s)	244, 255
DpnI	GATC	1 cut(s)	106
DpnII	GATC	1 cut(s)	104
Eco130I	CCWWGG	1 cut(s)	123
Eco147I	AGGCCT	1 cut(s)	128
Eco47I	GGWCC	2 cut(s)	194, 340
Eco57I	CTGAAG	1 cut(s)	402
EcoO109I	RGGNCCY	1 cut(s)	297
EcoT14I	CCWWGG	1 cut(s)	123
EcoT22I	ATGCAT	1 cut(s)	41
ErhI	CCWWGG	1 cut(s)	123
FaeI	CATG	3 cut(s)	13, 43, 53
FaiI	YATR	8 cut(s)	11, 41, 51, 175, 280, 390, 409, 457
FatI	CATG	3 cut(s)	9, 39, 49
FblI	GTMKAC	1 cut(s)	174
FokI	GGATG	2 cut(s)	16, 130
GsaI	CCCAGC	1 cut(s)	297
GsuI	CTGGAG	1 cut(s)	210
HaeIII	GGCC	2 cut(s)	128, 299
Hin1II	CATG	3 cut(s)	13, 43, 53
HincII	GTYRAC	1 cut(s)	6
HindII	GTYRAC	1 cut(s)	6
HinfI	GANTC	3 cut(s)	61, 248, 430
HphI	GGTGA	1 cut(s)	61
Hpy166II	GTNNAC	3 cut(s)	6, 175, 340
Hpy188I	TCNGA	4 cut(s)	47, 158, 349, 421
Hpy188III	TCNNGA	1 cut(s)	227
Hpy8I	GTNNAC	3 cut(s)	6, 175, 340
HpyAV	CCTTC	1 cut(s)	373
HpyCH4III	ACNGT	2 cut(s)	19, 203
HpyCH4V	TGCA	6 cut(s)	22, 39, 53, 263, 288, 314
HpyF10VI	GCNNNNNNNGC	2 cut(s)	167, 260
HpyF3I	CTNAG	2 cut(s)	244, 255
Hsp92II	CATG	3 cut(s)	13, 43, 53
Kzo9I	GATC	1 cut(s)	104
LmnI	GCTCC	1 cut(s)	229
LweI	GCATC	5 cut(s)	152, 170, 211, 223, 412
MalI	GATC	1 cut(s)	106
MboI	GATC	1 cut(s)	104
MboII	GAAGA	1 cut(s)	124
MflI	RGATCY	1 cut(s)	104
MluCI	AATT	1 cut(s)	24
MmeI	TCCRAC	2 cut(s)	172, 174
MnlI	CCTC	4 cut(s)	108, 157, 371, 376
Mph1103I	ATGCAT	1 cut(s)	41
MroXI	GAANNNNTTC	1 cut(s)	65
MseI	TTAA	1 cut(s)	84
MslI	CAYNNNNRTG	1 cut(s)	34
MspA1I	CMGCKG	1 cut(s)	254
Mva1269I	GAATGC	1 cut(s)	265
MwoI	GCNNNNNNNGC	2 cut(s)	167, 260
NdeII	GATC	1 cut(s)	104
NlaIII	CATG	3 cut(s)	13, 43, 53
NlaIV	GGNNCC	1 cut(s)	298
NsiI	ATGCAT	1 cut(s)	41
NspI	RCATGY	2 cut(s)	43, 53
PceI	AGGCCT	1 cut(s)	128
PctI	GAATGC	1 cut(s)	265
PdmI	GAANNNNTTC	1 cut(s)	65
PfeI	GAWTC	3 cut(s)	61, 248, 430
PshAI	GACNNNNGTC	1 cut(s)	401
PspFI	CCCAGC	1 cut(s)	293
PspN4I	GGNNCC	1 cut(s)	298
PspPI	GGNCC	3 cut(s)	194, 297, 340
PstNI	CAGNNNCTG	1 cut(s)	425
PsuI	RGATCY	1 cut(s)	104
PvuII	CAGCTG	1 cut(s)	254
RsaI	GTAC	1 cut(s)	239
RsaNI	GTAC	1 cut(s)	238
RseI	CAYNNNNRTG	1 cut(s)	34
SaqAI	TTAA	1 cut(s)	84
Sau3AI	GATC	1 cut(s)	104
Sau96I	GGNCC	3 cut(s)	194, 297, 340
SetI	ASST	8 cut(s)	183, 189, 256, 311, 324, 334, 401, 456
SfaNI	GCATC	5 cut(s)	152, 170, 211, 223, 412
SinI	GGWCC	2 cut(s)	194, 340
SmiMI	CAYNNNNRTG	1 cut(s)	34
Sse9I	AATT	1 cut(s)	24
SseBI	AGGCCT	1 cut(s)	128
SsiI	CCGC	1 cut(s)	206
StuI	AGGCCT	1 cut(s)	128
StyI	CCWWGG	1 cut(s)	123
TaaI	ACNGT	2 cut(s)	19, 203
TaqI	TCGA	1 cut(s)	363
TasI	AATT	1 cut(s)	24
TfiI	GAWTC	3 cut(s)	61, 248, 430
Tru1I	TTAA	1 cut(s)	84
Tru9I	TTAA	1 cut(s)	84
TscAI	CASTG	1 cut(s)	342
TspDTI	ATGAA	1 cut(s)	392
TspRI	CASTG	1 cut(s)	342
VpaK11BI	GGWCC	2 cut(s)	194, 340
XapI	RAATTY	1 cut(s)	24
XceI	RCATGY	2 cut(s)	43, 53
XmiI	GTMKAC	1 cut(s)	174
XmnI	GAANNNNTTC	1 cut(s)	65
Zsp2I	ATGCAT	1 cut(s)	41

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.