Rh6DG125100

Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0003912
Physical Location & Seq
Reverse (-)
17666907 .. 17670064
3158 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG125100.1

Sequence Viewer

Length: 696 bp
ATGGTGTGGTGGAAGGGCCGACCGCCGGAGCTAACGCCACAGGCTGGGGCAGTGATGGCCAGGCAAAGGATTTGGGCTTCTGGTTCTATAGCTTGGGTTTGGGCTTGGGCCTTTGGGCCTGGGCTTAATTCGACCTCACTTACTCCGCTCTCAGCCGAAATAAAACTACTCCCAAGTCTTCATCATCAGCTTTCTCATCCCCCTCCTCACCTAACCGTCCTACTCCGTCTAAACATGTCAACCATGACAACTGTGAACGTTCCCTCTCAGTGCATGCTCAGAAATGCACCTAAGACTCGATTCACCAGTTCTATCATCAAGTTCTCATCTCCACTTGGATCTGTGAAGACTCTCTCCAAGTCTTTTGGCTTGAAAGCATCTGCCTCTGCCCGAACATCAATGACAGTATACAAGGTTAAGCTGATTGGGCCAGACGGTGAGGAGAACGAGTTTGACGCTCCAGATGACTCTTACATCTTGGATTCAGCTGAGAACGCAGGAGTTGAGCTGCCCTATTCTTGCAGGGCTGGGGCATGCTCCACCTGTGCAGGAAAGATGGTAGCAGGTGCAGTGGACCAGTCGGATGGTTCCTTCCTTGATGACAACCAAATGAAGGAGGGTTATGTGCTGACCTGTGTCTCGTATCCAACTTCAGACTGTGTGATCCACACTCACAAGGAAAGTGAACTGTATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00195 map00195
Pfam Domains
Protein Families
Fer2

Protein Analysis

231

Amino Acids

25.05

Weight (kDa)

6.99

Isoelectric Point (pI)

36.73

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Fer2 PF00111 144 - 217 1.1e-22 2Fe-2S iron-sulfur cluster binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 554
Acc36I ACCTGC 1 cut(s) 554
AccB7I CCANNNNNTGG 1 cut(s) 44
AccBSI CCGCTC 1 cut(s) 148
AccI GTMKAC 1 cut(s) 408
AciI CCGC 2 cut(s) 23, 146
AclI AACGTT 1 cut(s) 258
AclWI GGATC 2 cut(s) 346, 658
AcoI YGGCCR 1 cut(s) 57
AcuI CTGAAG 1 cut(s) 636
AfiI CCNNNNNNNGG 4 cut(s) 25, 44, 66, 613
AflIII ACRYGT 1 cut(s) 234
AgsI TTSAA 1 cut(s) 373
AjnI CCWGG 2 cut(s) 59, 118
AluBI AGCT 6 cut(s) 31, 92, 190, 421, 488, 508
AluI AGCT 6 cut(s) 31, 92, 190, 421, 488, 508
Alw26I GTCTC 1 cut(s) 643
AlwI GGATC 2 cut(s) 346, 658
AoxI GGCC 5 cut(s) 16, 57, 108, 116, 428
ApeKI GCWGC 1 cut(s) 508
AspS9I GGNCC 5 cut(s) 16, 108, 116, 428, 574
AsuHPI GGTGA 3 cut(s) 200, 295, 449
AvaII GGWCC 1 cut(s) 574
BalI TGGCCA 1 cut(s) 59
BbsI GAAGAC 2 cut(s) 170, 353
BbvI GCAGC 1 cut(s) 495
BccI CCATC 3 cut(s) 49, 550, 578
BciT130I CCWGG 2 cut(s) 61, 120
BciVI GTATCC 1 cut(s) 654
BcoDI GTCTC 1 cut(s) 643
BfmI CTRYAG 1 cut(s) 87
BfuAI ACCTGC 1 cut(s) 554
BfuI GTATCC 1 cut(s) 654
BisI GCNGC 1 cut(s) 509
BlsI GCNGC 1 cut(s) 510
Bme1390I CCNGG 2 cut(s) 61, 120
Bme18I GGWCC 1 cut(s) 574
BmgT120I GGNCC 5 cut(s) 16, 108, 116, 428, 574
BmiI GGNNCC 1 cut(s) 589
BmrFI CCNGG 2 cut(s) 61, 120
BmsI GCATC 1 cut(s) 386
BoxI GACNNNNGTC 1 cut(s) 635
BpiI GAAGAC 2 cut(s) 170, 353
BpmI CTGGAG 1 cut(s) 444
BsaJI CCNNGG 1 cut(s) 119
BsaXI ACNNNNNCTCC 2 cut(s) 434, 464
Bsc4I CCNNNNNNNGG 4 cut(s) 25, 44, 66, 613
Bse1I ACTGG 2 cut(s) 306, 577
BseBI CCWGG 2 cut(s) 61, 120
BseDI CCNNGG 1 cut(s) 119
BseGI GGATG 2 cut(s) 196, 589
BseLI CCNNNNNNNGG 4 cut(s) 25, 44, 66, 613
BseMII CTCAG 4 cut(s) 165, 281, 292, 480
BseNI ACTGG 2 cut(s) 306, 577
BseRI GAGGAG 2 cut(s) 195, 455
BseXI GCAGC 1 cut(s) 495
BseYI CCCAGC 2 cut(s) 44, 527
BsgI GTGCAG 2 cut(s) 567, 588
Bsh1285I CGRYCG 1 cut(s) 23
BshFI GGCC 5 cut(s) 18, 59, 110, 118, 430
BsiEI CGRYCG 1 cut(s) 23
BsiSI CCGG 1 cut(s) 26
BslI CCNNNNNNNGG 4 cut(s) 25, 44, 66, 613
BsmAI GTCTC 1 cut(s) 643
BsnI GGCC 5 cut(s) 18, 59, 110, 118, 430
Bsp143I GATC 2 cut(s) 338, 663
BspACI CCGC 2 cut(s) 23, 146
BspANI GGCC 5 cut(s) 18, 59, 110, 118, 430
BspCNI CTCAG 4 cut(s) 164, 280, 291, 481
BspLI GGNNCC 1 cut(s) 589
BspMI ACCTGC 1 cut(s) 554
BspPI GGATC 2 cut(s) 346, 658
BsrBI CCGCTC 1 cut(s) 148
BsrI ACTGG 2 cut(s) 306, 577
BssECI CCNNGG 1 cut(s) 119
BssMI GATC 2 cut(s) 338, 663
BssNAI GTATAC 1 cut(s) 409
Bst1107I GTATAC 1 cut(s) 409
Bst2UI CCWGG 2 cut(s) 61, 120
Bst4CI ACNGT 6 cut(s) 217, 253, 406, 437, 659, 690
BstC8I GCNNGC 2 cut(s) 275, 535
BstDEI CTNAG 5 cut(s) 151, 267, 278, 291, 489
BstF5I GGATG 2 cut(s) 196, 589
BstKTI GATC 2 cut(s) 341, 666
BstMAI GTCTC 1 cut(s) 643
BstMBI GATC 2 cut(s) 338, 663
BstMCI CGRYCG 1 cut(s) 23
BstMWI GCNNNNNNNGC 3 cut(s) 56, 427, 494
BstNI CCWGG 2 cut(s) 61, 120
BstNSI RCATGY 3 cut(s) 238, 277, 537
BstPAI GACNNNNGTC 1 cut(s) 635
BstSCI CCNGG 2 cut(s) 59, 118
BstSFI CTRYAG 1 cut(s) 87
BstV1I GCAGC 1 cut(s) 495
BstV2I GAAGAC 2 cut(s) 170, 353
BstX2I RGATCY 1 cut(s) 338
BstXI CCANNNNNNTGG 1 cut(s) 584
BstYI RGATCY 1 cut(s) 338
BstZ17I GTATAC 1 cut(s) 409
BsuI GTATCC 1 cut(s) 654
BsuRI GGCC 5 cut(s) 18, 59, 110, 118, 430
BtsCI GGATG 2 cut(s) 196, 589
BtsI GCAGTG 2 cut(s) 57, 576
BtsIMutI CAGTG 3 cut(s) 57, 275, 576
BveI ACCTGC 1 cut(s) 554
Cac8I GCNNGC 2 cut(s) 275, 535
Cfr13I GGNCC 5 cut(s) 16, 108, 116, 428, 574
CseI GACGC 1 cut(s) 464
CviAII CATG 4 cut(s) 235, 244, 274, 534
DdeI CTNAG 5 cut(s) 151, 267, 278, 291, 489
DpnI GATC 2 cut(s) 340, 665
DpnII GATC 2 cut(s) 338, 663
EaeI YGGCCR 1 cut(s) 57
Eco47I GGWCC 1 cut(s) 574
Eco57I CTGAAG 1 cut(s) 636
EcoRII CCWGG 2 cut(s) 59, 118
FaeI CATG 4 cut(s) 238, 247, 277, 537
FaiI YATR 7 cut(s) 89, 236, 245, 275, 409, 535, 624
FatI CATG 4 cut(s) 234, 243, 273, 533
FblI GTMKAC 1 cut(s) 408
Fnu4HI GCNGC 1 cut(s) 509
FokI GGATG 2 cut(s) 183, 596
Fsp4HI GCNGC 1 cut(s) 509
GluI GCNGC 1 cut(s) 509
GsaI CCCAGC 2 cut(s) 48, 531
GsuI CTGGAG 1 cut(s) 444
HaeIII GGCC 5 cut(s) 18, 59, 110, 118, 430
HapII CCGG 1 cut(s) 26
HgaI GACGC 1 cut(s) 464
Hin1II CATG 4 cut(s) 238, 247, 277, 537
HincII GTYRAC 1 cut(s) 240
HindII GTYRAC 1 cut(s) 240
HinfI GANTC 5 cut(s) 295, 300, 349, 467, 482
HpaII CCGG 1 cut(s) 26
HphI GGTGA 3 cut(s) 200, 295, 449
Hpy166II GTNNAC 5 cut(s) 240, 256, 409, 574, 686
Hpy188I TCNGA 3 cut(s) 281, 583, 655
Hpy188III TCNNGA 1 cut(s) 461
Hpy8I GTNNAC 5 cut(s) 240, 256, 409, 574, 686
HpyAV CCTTC 3 cut(s) 7, 601, 607
HpyCH4III ACNGT 6 cut(s) 217, 253, 406, 437, 659, 690
HpyCH4IV ACGT 1 cut(s) 258
HpyCH4V TGCA 5 cut(s) 273, 287, 522, 548, 569
HpyF10VI GCNNNNNNNGC 3 cut(s) 56, 427, 494
HpyF3I CTNAG 5 cut(s) 151, 267, 278, 291, 489
HpySE526I ACGT 1 cut(s) 258
Hsp92II CATG 4 cut(s) 238, 247, 277, 537
Kzo9I GATC 2 cut(s) 338, 663
LmnI GCTCC 3 cut(s) 28, 463, 542
Lsp1109I GCAGC 1 cut(s) 495
LweI GCATC 1 cut(s) 386
MaeII ACGT 1 cut(s) 258
MalI GATC 2 cut(s) 340, 665
MbiI CCGCTC 1 cut(s) 148
MboI GATC 2 cut(s) 338, 663
MboII GAAGA 2 cut(s) 170, 358
MflI RGATCY 1 cut(s) 338
MlsI TGGCCA 1 cut(s) 59
MluCI AATT 1 cut(s) 127
MluNI TGGCCA 1 cut(s) 59
MlyI GAGTC 3 cut(s) 289, 343, 461
MmeI TCCRAC 2 cut(s) 561, 671
MnlI CCTC 7 cut(s) 145, 213, 216, 274, 394, 433, 610
Mox20I TGGCCA 1 cut(s) 59
MscI TGGCCA 1 cut(s) 59
MseI TTAA 2 cut(s) 126, 417
Msp20I TGGCCA 1 cut(s) 59
MspA1I CMGCKG 1 cut(s) 488
MspI CCGG 1 cut(s) 26
MspR9I CCNGG 2 cut(s) 61, 120
MvaI CCWGG 2 cut(s) 61, 120
MwoI GCNNNNNNNGC 3 cut(s) 56, 427, 494
NdeII GATC 2 cut(s) 338, 663
NlaIII CATG 4 cut(s) 238, 247, 277, 537
NlaIV GGNNCC 1 cut(s) 589
NspI RCATGY 3 cut(s) 238, 277, 537
PaeI GCATGC 2 cut(s) 277, 537
PaqCI CACCTGC 1 cut(s) 554
PciI ACATGT 1 cut(s) 234
PfeI GAWTC 2 cut(s) 300, 482
PflMI CCANNNNNTGG 1 cut(s) 44
PkrI GCNGC 1 cut(s) 510
PleI GAGTC 3 cut(s) 289, 343, 461
PpsI GAGTC 3 cut(s) 289, 343, 461
PscI ACATGT 1 cut(s) 234
PshAI GACNNNNGTC 1 cut(s) 635
Psp1406I AACGTT 1 cut(s) 258
Psp6I CCWGG 2 cut(s) 59, 118
PspFI CCCAGC 2 cut(s) 44, 527
PspGI CCWGG 2 cut(s) 59, 118
PspN4I GGNNCC 1 cut(s) 589
PspPI GGNCC 5 cut(s) 16, 108, 116, 428, 574
PsuI RGATCY 1 cut(s) 338
PvuII CAGCTG 1 cut(s) 488
SaqAI TTAA 2 cut(s) 126, 417
SatI GCNGC 1 cut(s) 509
Sau3AI GATC 2 cut(s) 338, 663
Sau96I GGNCC 5 cut(s) 16, 108, 116, 428, 574
SchI GAGTC 3 cut(s) 289, 343, 461
ScrFI CCNGG 2 cut(s) 61, 120
SfaNI GCATC 1 cut(s) 386
SfcI CTRYAG 1 cut(s) 87
SinI GGWCC 1 cut(s) 574
SphI GCATGC 2 cut(s) 277, 537
Sse9I AATT 1 cut(s) 127
SsiI CCGC 2 cut(s) 23, 146
StyD4I CCNGG 2 cut(s) 59, 118
TaaI ACNGT 6 cut(s) 217, 253, 406, 437, 659, 690
TaiI ACGT 1 cut(s) 261
TaqI TCGA 2 cut(s) 131, 298
TasI AATT 1 cut(s) 127
TfiI GAWTC 2 cut(s) 300, 482
Tru1I TTAA 2 cut(s) 126, 417
Tru9I TTAA 2 cut(s) 126, 417
TscAI CASTG 3 cut(s) 57, 275, 576
TseI GCWGC 1 cut(s) 508
TspDTI ATGAA 2 cut(s) 170, 626
TspGWI ACGGA 1 cut(s) 215
TspRI CASTG 3 cut(s) 57, 275, 576
Van91I CCANNNNNTGG 1 cut(s) 44
VpaK11BI GGWCC 1 cut(s) 574
XceI RCATGY 3 cut(s) 238, 277, 537
XmiI GTMKAC 1 cut(s) 408
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.